Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2374 and Dshi_2375 are separated by 96 nucleotides Dshi_2375 and Dshi_2376 are separated by 24 nucleotides Dshi_2376 and Dshi_2377 are separated by 128 nucleotides
Dshi_2374: Dshi_2374 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,507,462 to 2,508,685
_2374
Dshi_2375: Dshi_2375 - protein of unknown function DUF1194 (RefSeq), at 2,508,782 to 2,509,588
_2375
Dshi_2376: Dshi_2376 - hypothetical protein (RefSeq), at 2,509,613 to 2,510,089
_2376
Dshi_2377: Dshi_2377 - protein of unknown function DUF839 (RefSeq), at 2,510,218 to 2,512,242
_2377
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2508.660 kb on - strand at 2508.702 kb on - strand at 2508.747 kb on - strand at 2508.837 kb on - strand at 2508.851 kb on - strand at 2508.966 kb on - strand, within Dshi_2375 at 2508.995 kb on + strand, within Dshi_2375 at 2509.003 kb on - strand, within Dshi_2375 at 2509.192 kb on + strand, within Dshi_2375 at 2509.198 kb on - strand, within Dshi_2375 at 2509.246 kb on + strand, within Dshi_2375 at 2509.369 kb on - strand, within Dshi_2375 at 2509.400 kb on + strand, within Dshi_2375 at 2509.601 kb on + strand at 2509.617 kb on - strand at 2509.691 kb on + strand, within Dshi_2376 at 2509.709 kb on - strand, within Dshi_2376 at 2509.745 kb on - strand, within Dshi_2376 at 2509.774 kb on + strand, within Dshi_2376 at 2509.774 kb on + strand, within Dshi_2376 at 2509.817 kb on - strand, within Dshi_2376 at 2509.869 kb on - strand, within Dshi_2376 at 2509.942 kb on + strand, within Dshi_2376 at 2510.059 kb on + strand at 2510.099 kb on - strand at 2510.109 kb on - strand at 2510.269 kb on - strand at 2510.277 kb on + strand at 2510.360 kb on - strand at 2510.439 kb on + strand, within Dshi_2377 at 2510.447 kb on - strand, within Dshi_2377 at 2510.447 kb on - strand, within Dshi_2377 at 2510.468 kb on - strand, within Dshi_2377 at 2510.471 kb on - strand, within Dshi_2377 at 2510.539 kb on + strand, within Dshi_2377 at 2510.681 kb on - strand, within Dshi_2377 at 2510.717 kb on - strand, within Dshi_2377 at 2510.722 kb on + strand, within Dshi_2377 at 2510.774 kb on + strand, within Dshi_2377 at 2510.782 kb on - strand, within Dshi_2377 at 2510.784 kb on + strand, within Dshi_2377 at 2510.792 kb on - strand, within Dshi_2377 at 2510.792 kb on - strand, within Dshi_2377 at 2510.812 kb on - strand, within Dshi_2377 at 2510.853 kb on + strand, within Dshi_2377 at 2510.866 kb on + strand, within Dshi_2377 at 2510.893 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.898 kb on + strand, within Dshi_2377 at 2510.963 kb on - strand, within Dshi_2377 at 2511.022 kb on - strand, within Dshi_2377 at 2511.083 kb on - strand, within Dshi_2377 at 2511.088 kb on - strand, within Dshi_2377 at 2511.088 kb on - strand, within Dshi_2377
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,508,660 - +0.2 2,508,702 - -1.6 2,508,747 - -1.0 2,508,837 - +1.6 2,508,851 - -2.6 2,508,966 - Dshi_2375 0.23 +0.6 2,508,995 + Dshi_2375 0.26 +0.9 2,509,003 - Dshi_2375 0.27 -2.8 2,509,192 + Dshi_2375 0.51 +1.8 2,509,198 - Dshi_2375 0.52 +0.9 2,509,246 + Dshi_2375 0.57 -2.3 2,509,369 - Dshi_2375 0.73 +2.0 2,509,400 + Dshi_2375 0.77 +1.9 2,509,601 + +1.0 2,509,617 - +1.2 2,509,691 + Dshi_2376 0.16 +0.2 2,509,709 - Dshi_2376 0.20 -1.6 2,509,745 - Dshi_2376 0.28 -0.7 2,509,774 + Dshi_2376 0.34 -0.4 2,509,774 + Dshi_2376 0.34 +0.4 2,509,817 - Dshi_2376 0.43 +0.4 2,509,869 - Dshi_2376 0.54 -1.6 2,509,942 + Dshi_2376 0.69 -2.8 2,510,059 + -3.6 2,510,099 - -0.8 2,510,109 - +1.0 2,510,269 - +1.3 2,510,277 + -1.0 2,510,360 - -0.3 2,510,439 + Dshi_2377 0.11 +2.5 2,510,447 - Dshi_2377 0.11 -1.9 2,510,447 - Dshi_2377 0.11 +0.1 2,510,468 - Dshi_2377 0.12 +1.6 2,510,471 - Dshi_2377 0.12 -0.2 2,510,539 + Dshi_2377 0.16 -0.2 2,510,681 - Dshi_2377 0.23 +1.8 2,510,717 - Dshi_2377 0.25 +0.6 2,510,722 + Dshi_2377 0.25 +0.3 2,510,774 + Dshi_2377 0.27 +0.8 2,510,782 - Dshi_2377 0.28 -3.6 2,510,784 + Dshi_2377 0.28 -0.6 2,510,792 - Dshi_2377 0.28 +2.4 2,510,792 - Dshi_2377 0.28 +1.5 2,510,812 - Dshi_2377 0.29 +0.5 2,510,853 + Dshi_2377 0.31 -1.1 2,510,866 + Dshi_2377 0.32 -0.4 2,510,893 + Dshi_2377 0.33 +1.5 2,510,898 + Dshi_2377 0.34 -0.8 2,510,898 + Dshi_2377 0.34 -4.2 2,510,898 + Dshi_2377 0.34 +0.6 2,510,963 - Dshi_2377 0.37 +0.8 2,511,022 - Dshi_2377 0.40 -0.3 2,511,083 - Dshi_2377 0.43 +0.6 2,511,088 - Dshi_2377 0.43 +1.8 2,511,088 - Dshi_2377 0.43 +0.8
Or see this region's nucleotide sequence