Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2269 and Dshi_2270 overlap by 4 nucleotides Dshi_2270 and Dshi_2271 overlap by 1 nucleotides Dshi_2271 and Dshi_2272 are separated by 14 nucleotides Dshi_2272 and Dshi_2273 are separated by 79 nucleotides
Dshi_2269: Dshi_2269 - hypothetical protein (RefSeq), at 2,393,676 to 2,394,230
_2269
Dshi_2270: Dshi_2270 - hypothetical protein (RefSeq), at 2,394,227 to 2,394,736
_2270
Dshi_2271: Dshi_2271 - transcriptional regulator, TetR family (RefSeq), at 2,394,736 to 2,395,365
_2271
Dshi_2272: Dshi_2272 - hypothetical protein (RefSeq), at 2,395,380 to 2,395,685
_2272
Dshi_2273: Dshi_2273 - Homoserine dehydrogenase (RefSeq), at 2,395,765 to 2,397,051
_2273
Position (kb)
2394
2395
2396 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2393.738 kb on - strand, within Dshi_2269 at 2393.762 kb on + strand, within Dshi_2269 at 2393.770 kb on - strand, within Dshi_2269 at 2393.784 kb on + strand, within Dshi_2269 at 2393.799 kb on - strand, within Dshi_2269 at 2393.801 kb on + strand, within Dshi_2269 at 2393.809 kb on + strand, within Dshi_2269 at 2393.809 kb on - strand, within Dshi_2269 at 2393.850 kb on + strand, within Dshi_2269 at 2393.853 kb on - strand, within Dshi_2269 at 2393.947 kb on + strand, within Dshi_2269 at 2393.952 kb on + strand, within Dshi_2269 at 2393.952 kb on + strand, within Dshi_2269 at 2393.955 kb on - strand, within Dshi_2269 at 2393.957 kb on + strand, within Dshi_2269 at 2393.960 kb on - strand, within Dshi_2269 at 2394.005 kb on + strand, within Dshi_2269 at 2394.010 kb on + strand, within Dshi_2269 at 2394.010 kb on + strand, within Dshi_2269 at 2394.013 kb on - strand, within Dshi_2269 at 2394.018 kb on - strand, within Dshi_2269 at 2394.032 kb on - strand, within Dshi_2269 at 2394.036 kb on + strand, within Dshi_2269 at 2394.046 kb on + strand, within Dshi_2269 at 2394.054 kb on - strand, within Dshi_2269 at 2394.130 kb on + strand, within Dshi_2269 at 2394.223 kb on - strand at 2394.225 kb on + strand at 2394.226 kb on - strand at 2394.233 kb on - strand at 2394.252 kb on - strand at 2394.272 kb on + strand at 2394.281 kb on + strand, within Dshi_2270 at 2394.338 kb on - strand, within Dshi_2270 at 2394.364 kb on - strand, within Dshi_2270 at 2394.383 kb on - strand, within Dshi_2270 at 2394.423 kb on - strand, within Dshi_2270 at 2394.460 kb on - strand, within Dshi_2270 at 2394.493 kb on + strand, within Dshi_2270 at 2394.524 kb on - strand, within Dshi_2270 at 2394.529 kb on - strand, within Dshi_2270 at 2394.573 kb on + strand, within Dshi_2270 at 2394.633 kb on - strand, within Dshi_2270 at 2394.691 kb on + strand at 2394.704 kb on - strand at 2394.729 kb on - strand at 2394.729 kb on - strand at 2394.729 kb on - strand at 2394.809 kb on + strand, within Dshi_2271 at 2394.904 kb on - strand, within Dshi_2271 at 2394.970 kb on + strand, within Dshi_2271 at 2395.017 kb on + strand, within Dshi_2271 at 2395.025 kb on - strand, within Dshi_2271 at 2395.030 kb on - strand, within Dshi_2271 at 2395.040 kb on - strand, within Dshi_2271 at 2395.053 kb on - strand, within Dshi_2271 at 2395.131 kb on - strand, within Dshi_2271 at 2395.136 kb on + strand, within Dshi_2271 at 2395.164 kb on - strand, within Dshi_2271 at 2395.173 kb on - strand, within Dshi_2271 at 2395.208 kb on - strand, within Dshi_2271 at 2395.219 kb on - strand, within Dshi_2271 at 2395.234 kb on - strand, within Dshi_2271 at 2395.267 kb on + strand, within Dshi_2271 at 2395.295 kb on + strand, within Dshi_2271 at 2395.303 kb on - strand at 2395.320 kb on + strand at 2395.374 kb on + strand at 2395.378 kb on + strand at 2395.441 kb on + strand, within Dshi_2272 at 2395.441 kb on + strand, within Dshi_2272 at 2395.449 kb on - strand, within Dshi_2272 at 2395.492 kb on - strand, within Dshi_2272 at 2395.532 kb on + strand, within Dshi_2272 at 2395.540 kb on - strand, within Dshi_2272 at 2395.557 kb on - strand, within Dshi_2272 at 2395.594 kb on - strand, within Dshi_2272 at 2395.614 kb on - strand, within Dshi_2272 at 2395.628 kb on - strand, within Dshi_2272 at 2395.666 kb on + strand at 2395.666 kb on + strand at 2395.671 kb on + strand at 2395.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,393,738 - Dshi_2269 0.11 +0.2 2,393,762 + Dshi_2269 0.15 +1.1 2,393,770 - Dshi_2269 0.17 -2.0 2,393,784 + Dshi_2269 0.19 +0.9 2,393,799 - Dshi_2269 0.22 -0.0 2,393,801 + Dshi_2269 0.23 -1.3 2,393,809 + Dshi_2269 0.24 +0.6 2,393,809 - Dshi_2269 0.24 +0.6 2,393,850 + Dshi_2269 0.31 +0.3 2,393,853 - Dshi_2269 0.32 -0.2 2,393,947 + Dshi_2269 0.49 +0.4 2,393,952 + Dshi_2269 0.50 +0.4 2,393,952 + Dshi_2269 0.50 -0.3 2,393,955 - Dshi_2269 0.50 -2.0 2,393,957 + Dshi_2269 0.51 -1.1 2,393,960 - Dshi_2269 0.51 -2.1 2,394,005 + Dshi_2269 0.59 +0.6 2,394,010 + Dshi_2269 0.60 +1.4 2,394,010 + Dshi_2269 0.60 +0.7 2,394,013 - Dshi_2269 0.61 -0.9 2,394,018 - Dshi_2269 0.62 -0.6 2,394,032 - Dshi_2269 0.64 +1.5 2,394,036 + Dshi_2269 0.65 -0.3 2,394,046 + Dshi_2269 0.67 +1.0 2,394,054 - Dshi_2269 0.68 +0.7 2,394,130 + Dshi_2269 0.82 +0.3 2,394,223 - +2.3 2,394,225 + -0.3 2,394,226 - -1.6 2,394,233 - +1.1 2,394,252 - -1.8 2,394,272 + +0.5 2,394,281 + Dshi_2270 0.11 -2.3 2,394,338 - Dshi_2270 0.22 +0.9 2,394,364 - Dshi_2270 0.27 +0.1 2,394,383 - Dshi_2270 0.31 +0.3 2,394,423 - Dshi_2270 0.38 +1.2 2,394,460 - Dshi_2270 0.46 +1.0 2,394,493 + Dshi_2270 0.52 +1.1 2,394,524 - Dshi_2270 0.58 +2.0 2,394,529 - Dshi_2270 0.59 -0.5 2,394,573 + Dshi_2270 0.68 +1.1 2,394,633 - Dshi_2270 0.80 +0.4 2,394,691 + +0.3 2,394,704 - -0.4 2,394,729 - +0.0 2,394,729 - -2.1 2,394,729 - -0.6 2,394,809 + Dshi_2271 0.12 -0.4 2,394,904 - Dshi_2271 0.27 -0.7 2,394,970 + Dshi_2271 0.37 -2.6 2,395,017 + Dshi_2271 0.45 +0.7 2,395,025 - Dshi_2271 0.46 +1.6 2,395,030 - Dshi_2271 0.47 +0.4 2,395,040 - Dshi_2271 0.48 -2.6 2,395,053 - Dshi_2271 0.50 -0.2 2,395,131 - Dshi_2271 0.63 +1.0 2,395,136 + Dshi_2271 0.63 -3.3 2,395,164 - Dshi_2271 0.68 -1.7 2,395,173 - Dshi_2271 0.69 -1.2 2,395,208 - Dshi_2271 0.75 -0.1 2,395,219 - Dshi_2271 0.77 -1.2 2,395,234 - Dshi_2271 0.79 +1.0 2,395,267 + Dshi_2271 0.84 -0.3 2,395,295 + Dshi_2271 0.89 -0.3 2,395,303 - -0.9 2,395,320 + -0.4 2,395,374 + -1.0 2,395,378 + +1.7 2,395,441 + Dshi_2272 0.20 -5.1 2,395,441 + Dshi_2272 0.20 -4.9 2,395,449 - Dshi_2272 0.23 -3.9 2,395,492 - Dshi_2272 0.37 -5.7 2,395,532 + Dshi_2272 0.50 -0.0 2,395,540 - Dshi_2272 0.52 -2.3 2,395,557 - Dshi_2272 0.58 -4.5 2,395,594 - Dshi_2272 0.70 -5.9 2,395,614 - Dshi_2272 0.76 -3.8 2,395,628 - Dshi_2272 0.81 -5.0 2,395,666 + +0.8 2,395,666 + -0.8 2,395,671 + -3.8 2,395,746 + -2.5
Or see this region's nucleotide sequence