Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2096 and Dshi_2097 are separated by 18 nucleotides Dshi_2097 and Dshi_2098 are separated by 119 nucleotides Dshi_2098 and Dshi_2099 are separated by 62 nucleotides Dshi_2099 and Dshi_R0041 are separated by 179 nucleotides
Dshi_2096: Dshi_2096 - cobyric acid synthase CobQ (RefSeq), at 2,219,140 to 2,220,600
_2096
Dshi_2097: Dshi_2097 - hypothetical protein (RefSeq), at 2,220,619 to 2,221,347
_2097
Dshi_2098: Dshi_2098 - type I secretion outer membrane protein, TolC family (RefSeq), at 2,221,467 to 2,222,837
_2098
Dshi_2099: Dshi_2099 - protein-L-isoaspartate(D-aspartate) O-methyltransferase (RefSeq), at 2,222,900 to 2,223,553
_2099
Dshi_R0041: Dshi_R0041 - tRNA-Cys (RefSeq), at 2,223,733 to 2,223,806
_R0041
Position (kb)
2221
2222
2223 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2220.576 kb on + strand at 2220.576 kb on + strand at 2220.636 kb on + strand at 2220.670 kb on + strand at 2220.877 kb on - strand, within Dshi_2097 at 2220.877 kb on - strand, within Dshi_2097 at 2220.878 kb on + strand, within Dshi_2097 at 2221.026 kb on + strand, within Dshi_2097 at 2221.034 kb on - strand, within Dshi_2097 at 2221.036 kb on - strand, within Dshi_2097 at 2221.130 kb on + strand, within Dshi_2097 at 2222.688 kb on + strand, within Dshi_2098 at 2222.839 kb on + strand at 2223.600 kb on + strand at 2223.641 kb on - strand at 2223.650 kb on - strand at 2223.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,220,576 + +0.5 2,220,576 + -0.0 2,220,636 + -3.5 2,220,670 + +1.7 2,220,877 - Dshi_2097 0.35 +0.6 2,220,877 - Dshi_2097 0.35 +2.1 2,220,878 + Dshi_2097 0.36 +1.6 2,221,026 + Dshi_2097 0.56 -0.2 2,221,034 - Dshi_2097 0.57 -1.2 2,221,036 - Dshi_2097 0.57 -0.7 2,221,130 + Dshi_2097 0.70 +0.3 2,222,688 + Dshi_2098 0.89 -2.6 2,222,839 + -3.0 2,223,600 + -1.6 2,223,641 - -0.8 2,223,650 - +0.4 2,223,674 + -1.3
Or see this region's nucleotide sequence