Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2098

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2096 and Dshi_2097 are separated by 18 nucleotidesDshi_2097 and Dshi_2098 are separated by 119 nucleotidesDshi_2098 and Dshi_2099 are separated by 62 nucleotidesDshi_2099 and Dshi_R0041 are separated by 179 nucleotides Dshi_2096: Dshi_2096 - cobyric acid synthase CobQ (RefSeq), at 2,219,140 to 2,220,600 _2096 Dshi_2097: Dshi_2097 - hypothetical protein (RefSeq), at 2,220,619 to 2,221,347 _2097 Dshi_2098: Dshi_2098 - type I secretion outer membrane protein, TolC family (RefSeq), at 2,221,467 to 2,222,837 _2098 Dshi_2099: Dshi_2099 - protein-L-isoaspartate(D-aspartate) O-methyltransferase (RefSeq), at 2,222,900 to 2,223,553 _2099 Dshi_R0041: Dshi_R0041 - tRNA-Cys (RefSeq), at 2,223,733 to 2,223,806 _R0041 Position (kb) 2221 2222 2223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2220.576 kb on + strandat 2220.576 kb on + strandat 2220.636 kb on + strandat 2220.670 kb on + strandat 2220.877 kb on - strand, within Dshi_2097at 2220.877 kb on - strand, within Dshi_2097at 2220.878 kb on + strand, within Dshi_2097at 2221.026 kb on + strand, within Dshi_2097at 2221.034 kb on - strand, within Dshi_2097at 2221.036 kb on - strand, within Dshi_2097at 2221.130 kb on + strand, within Dshi_2097at 2222.688 kb on + strand, within Dshi_2098at 2222.839 kb on + strandat 2223.600 kb on + strandat 2223.641 kb on - strandat 2223.650 kb on - strandat 2223.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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2,220,576 + +0.5
2,220,576 + -0.0
2,220,636 + -3.5
2,220,670 + +1.7
2,220,877 - Dshi_2097 0.35 +0.6
2,220,877 - Dshi_2097 0.35 +2.1
2,220,878 + Dshi_2097 0.36 +1.6
2,221,026 + Dshi_2097 0.56 -0.2
2,221,034 - Dshi_2097 0.57 -1.2
2,221,036 - Dshi_2097 0.57 -0.7
2,221,130 + Dshi_2097 0.70 +0.3
2,222,688 + Dshi_2098 0.89 -2.6
2,222,839 + -3.0
2,223,600 + -1.6
2,223,641 - -0.8
2,223,650 - +0.4
2,223,674 + -1.3

Or see this region's nucleotide sequence