Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2031 and Dshi_2032 are separated by 117 nucleotides Dshi_2032 and Dshi_2033 are separated by 12 nucleotides Dshi_2033 and Dshi_2034 are separated by 9 nucleotides
Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734
_2031
Dshi_2032: Dshi_2032 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,151,852 to 2,152,367
_2032
Dshi_2033: Dshi_2033 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,152,380 to 2,153,708
_2033
Dshi_2034: Dshi_2034 - Histidinol dehydrogenase (RefSeq), at 2,153,718 to 2,155,025
_2034
Position (kb)
2152
2153
2154 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2151.432 kb on - strand, within Dshi_2031 at 2151.442 kb on - strand, within Dshi_2031 at 2151.446 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.582 kb on - strand, within Dshi_2031 at 2151.649 kb on - strand at 2151.666 kb on + strand at 2151.787 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.810 kb on + strand at 2151.838 kb on - strand at 2151.998 kb on - strand, within Dshi_2032 at 2152.010 kb on + strand, within Dshi_2032 at 2152.136 kb on - strand, within Dshi_2032 at 2152.182 kb on + strand, within Dshi_2032 at 2152.208 kb on + strand, within Dshi_2032 at 2152.272 kb on + strand, within Dshi_2032 at 2152.366 kb on - strand at 2152.382 kb on + strand at 2152.532 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.541 kb on - strand, within Dshi_2033 at 2152.710 kb on + strand, within Dshi_2033 at 2152.767 kb on + strand, within Dshi_2033 at 2152.861 kb on + strand, within Dshi_2033 at 2152.923 kb on + strand, within Dshi_2033 at 2152.931 kb on - strand, within Dshi_2033 at 2153.054 kb on + strand, within Dshi_2033 at 2153.071 kb on + strand, within Dshi_2033 at 2153.072 kb on - strand, within Dshi_2033 at 2153.208 kb on - strand, within Dshi_2033 at 2153.208 kb on - strand, within Dshi_2033 at 2153.246 kb on + strand, within Dshi_2033 at 2153.254 kb on - strand, within Dshi_2033 at 2153.523 kb on - strand, within Dshi_2033 at 2153.529 kb on + strand, within Dshi_2033 at 2153.551 kb on + strand, within Dshi_2033 at 2153.551 kb on + strand, within Dshi_2033 at 2153.559 kb on - strand, within Dshi_2033 at 2153.559 kb on - strand, within Dshi_2033 at 2153.559 kb on - strand, within Dshi_2033 at 2153.559 kb on - strand, within Dshi_2033 at 2153.581 kb on - strand at 2153.738 kb on - strand at 2153.753 kb on - strand at 2153.754 kb on + strand at 2153.769 kb on + strand at 2153.817 kb on + strand at 2153.827 kb on + strand at 2153.832 kb on + strand at 2153.892 kb on - strand, within Dshi_2034 at 2153.901 kb on - strand, within Dshi_2034 at 2153.979 kb on + strand, within Dshi_2034 at 2154.021 kb on - strand, within Dshi_2034 at 2154.027 kb on - strand, within Dshi_2034 at 2154.188 kb on - strand, within Dshi_2034 at 2154.218 kb on + strand, within Dshi_2034 at 2154.228 kb on + strand, within Dshi_2034 at 2154.453 kb on - strand, within Dshi_2034 at 2154.468 kb on + strand, within Dshi_2034 at 2154.541 kb on + strand, within Dshi_2034 at 2154.547 kb on - strand, within Dshi_2034 at 2154.623 kb on - strand, within Dshi_2034 at 2154.628 kb on - strand, within Dshi_2034 at 2154.675 kb on - strand, within Dshi_2034
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,151,432 - Dshi_2031 0.74 -0.0 2,151,442 - Dshi_2031 0.74 -1.6 2,151,446 + Dshi_2031 0.75 +2.2 2,151,538 + Dshi_2031 0.83 +0.9 2,151,538 + Dshi_2031 0.83 +1.5 2,151,538 + Dshi_2031 0.83 -2.1 2,151,538 + Dshi_2031 0.83 -1.8 2,151,582 - Dshi_2031 0.87 +0.4 2,151,649 - -1.0 2,151,666 + -0.0 2,151,787 - -2.1 2,151,807 - -0.2 2,151,807 - -0.2 2,151,807 - -1.6 2,151,810 + +0.4 2,151,838 - +0.0 2,151,998 - Dshi_2032 0.28 -2.0 2,152,010 + Dshi_2032 0.31 +0.1 2,152,136 - Dshi_2032 0.55 -0.2 2,152,182 + Dshi_2032 0.64 -2.4 2,152,208 + Dshi_2032 0.69 +0.7 2,152,272 + Dshi_2032 0.81 +1.6 2,152,366 - -0.6 2,152,382 + -1.0 2,152,532 + Dshi_2033 0.11 +0.3 2,152,533 + Dshi_2033 0.12 -4.0 2,152,533 + Dshi_2033 0.12 +0.3 2,152,541 - Dshi_2033 0.12 -3.0 2,152,710 + Dshi_2033 0.25 -0.0 2,152,767 + Dshi_2033 0.29 +0.6 2,152,861 + Dshi_2033 0.36 -2.0 2,152,923 + Dshi_2033 0.41 -0.5 2,152,931 - Dshi_2033 0.41 -4.2 2,153,054 + Dshi_2033 0.51 -1.0 2,153,071 + Dshi_2033 0.52 -0.8 2,153,072 - Dshi_2033 0.52 +3.2 2,153,208 - Dshi_2033 0.62 +0.3 2,153,208 - Dshi_2033 0.62 -0.2 2,153,246 + Dshi_2033 0.65 -1.3 2,153,254 - Dshi_2033 0.66 +1.8 2,153,523 - Dshi_2033 0.86 +0.6 2,153,529 + Dshi_2033 0.86 -1.0 2,153,551 + Dshi_2033 0.88 -0.1 2,153,551 + Dshi_2033 0.88 +1.3 2,153,559 - Dshi_2033 0.89 -2.4 2,153,559 - Dshi_2033 0.89 +0.8 2,153,559 - Dshi_2033 0.89 -1.0 2,153,559 - Dshi_2033 0.89 -1.5 2,153,581 - -1.5 2,153,738 - -0.0 2,153,753 - -1.0 2,153,754 + +0.5 2,153,769 + -3.8 2,153,817 + -0.8 2,153,827 + +1.4 2,153,832 + -0.8 2,153,892 - Dshi_2034 0.13 -0.5 2,153,901 - Dshi_2034 0.14 -2.4 2,153,979 + Dshi_2034 0.20 +0.4 2,154,021 - Dshi_2034 0.23 -2.8 2,154,027 - Dshi_2034 0.24 +0.3 2,154,188 - Dshi_2034 0.36 +0.3 2,154,218 + Dshi_2034 0.38 -2.4 2,154,228 + Dshi_2034 0.39 -2.0 2,154,453 - Dshi_2034 0.56 +1.1 2,154,468 + Dshi_2034 0.57 -2.4 2,154,541 + Dshi_2034 0.63 -0.0 2,154,547 - Dshi_2034 0.63 -0.5 2,154,623 - Dshi_2034 0.69 -1.0 2,154,628 - Dshi_2034 0.70 -0.1 2,154,675 - Dshi_2034 0.73 -0.3
Or see this region's nucleotide sequence