Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1749

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1748 and Dshi_1749 are separated by 310 nucleotidesDshi_1749 and Dshi_1750 are separated by 80 nucleotides Dshi_1748: Dshi_1748 - hypothetical protein (RefSeq), at 1,813,903 to 1,814,532 _1748 Dshi_1749: Dshi_1749 - glutamate--cysteine ligase GCS2 (RefSeq), at 1,814,843 to 1,815,970 _1749 Dshi_1750: Dshi_1750 - acyl-CoA dehydrogenase domain protein (RefSeq), at 1,816,051 to 1,817,196 _1750 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1813.870 kb on - strandat 1813.947 kb on - strandat 1814.022 kb on - strand, within Dshi_1748at 1814.090 kb on + strand, within Dshi_1748at 1814.182 kb on - strand, within Dshi_1748at 1814.285 kb on + strand, within Dshi_1748at 1814.285 kb on + strand, within Dshi_1748at 1814.285 kb on + strand, within Dshi_1748at 1814.355 kb on + strand, within Dshi_1748at 1814.367 kb on + strand, within Dshi_1748at 1814.369 kb on - strand, within Dshi_1748at 1814.374 kb on + strand, within Dshi_1748at 1814.382 kb on - strand, within Dshi_1748at 1814.402 kb on - strand, within Dshi_1748at 1814.407 kb on - strand, within Dshi_1748at 1814.411 kb on + strand, within Dshi_1748at 1814.413 kb on + strand, within Dshi_1748at 1814.442 kb on + strand, within Dshi_1748at 1814.466 kb on + strand, within Dshi_1748at 1814.469 kb on - strand, within Dshi_1748at 1814.486 kb on - strandat 1814.499 kb on - strandat 1814.539 kb on - strandat 1814.539 kb on - strandat 1814.613 kb on + strandat 1814.655 kb on + strandat 1814.655 kb on + strandat 1814.655 kb on + strandat 1814.655 kb on + strandat 1814.663 kb on + strandat 1814.663 kb on - strandat 1814.665 kb on + strandat 1814.665 kb on + strandat 1814.708 kb on - strandat 1814.710 kb on + strandat 1814.718 kb on - strandat 1814.740 kb on - strandat 1814.740 kb on - strandat 1814.740 kb on - strandat 1814.792 kb on + strandat 1814.800 kb on - strandat 1814.807 kb on + strandat 1814.850 kb on + strandat 1814.850 kb on + strandat 1814.850 kb on + strandat 1814.858 kb on - strandat 1814.892 kb on - strandat 1814.940 kb on - strandat 1814.968 kb on + strand, within Dshi_1749at 1815.039 kb on + strand, within Dshi_1749at 1815.153 kb on - strand, within Dshi_1749at 1815.205 kb on + strand, within Dshi_1749at 1815.209 kb on + strand, within Dshi_1749at 1815.242 kb on - strand, within Dshi_1749at 1815.351 kb on - strand, within Dshi_1749at 1815.374 kb on - strand, within Dshi_1749at 1815.412 kb on - strand, within Dshi_1749at 1815.570 kb on + strand, within Dshi_1749at 1815.592 kb on - strand, within Dshi_1749at 1815.619 kb on - strand, within Dshi_1749at 1815.645 kb on + strand, within Dshi_1749at 1815.755 kb on - strand, within Dshi_1749at 1815.755 kb on - strand, within Dshi_1749at 1816.132 kb on + strandat 1816.135 kb on - strandat 1816.240 kb on - strand, within Dshi_1750at 1816.258 kb on + strand, within Dshi_1750at 1816.463 kb on - strand, within Dshi_1750at 1816.532 kb on + strand, within Dshi_1750at 1816.634 kb on - strand, within Dshi_1750at 1816.685 kb on - strand, within Dshi_1750at 1816.821 kb on - strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,813,870 - +0.7
1,813,947 - +1.6
1,814,022 - Dshi_1748 0.19 +1.6
1,814,090 + Dshi_1748 0.30 -0.1
1,814,182 - Dshi_1748 0.44 -0.4
1,814,285 + Dshi_1748 0.61 -0.0
1,814,285 + Dshi_1748 0.61 +0.6
1,814,285 + Dshi_1748 0.61 +1.1
1,814,355 + Dshi_1748 0.72 -0.7
1,814,367 + Dshi_1748 0.74 +0.7
1,814,369 - Dshi_1748 0.74 +1.2
1,814,374 + Dshi_1748 0.75 +0.1
1,814,382 - Dshi_1748 0.76 -1.0
1,814,402 - Dshi_1748 0.79 +2.9
1,814,407 - Dshi_1748 0.80 -0.8
1,814,411 + Dshi_1748 0.81 +0.2
1,814,413 + Dshi_1748 0.81 +1.1
1,814,442 + Dshi_1748 0.86 +1.4
1,814,466 + Dshi_1748 0.89 +0.1
1,814,469 - Dshi_1748 0.90 -2.3
1,814,486 - -0.6
1,814,499 - +0.1
1,814,539 - +1.0
1,814,539 - -0.4
1,814,613 + +1.6
1,814,655 + -1.3
1,814,655 + +1.2
1,814,655 + -1.6
1,814,655 + -1.0
1,814,663 + +0.6
1,814,663 - +2.3
1,814,665 + -0.8
1,814,665 + -0.2
1,814,708 - -0.0
1,814,710 + -0.3
1,814,718 - +0.7
1,814,740 - -2.0
1,814,740 - -1.5
1,814,740 - +0.6
1,814,792 + +0.8
1,814,800 - -0.3
1,814,807 + -1.0
1,814,850 + +0.8
1,814,850 + -0.7
1,814,850 + -0.9
1,814,858 - -2.8
1,814,892 - -0.5
1,814,940 - +0.2
1,814,968 + Dshi_1749 0.11 -3.9
1,815,039 + Dshi_1749 0.17 -1.4
1,815,153 - Dshi_1749 0.27 +0.5
1,815,205 + Dshi_1749 0.32 -0.5
1,815,209 + Dshi_1749 0.32 +1.0
1,815,242 - Dshi_1749 0.35 -0.7
1,815,351 - Dshi_1749 0.45 -1.6
1,815,374 - Dshi_1749 0.47 -4.1
1,815,412 - Dshi_1749 0.50 -1.6
1,815,570 + Dshi_1749 0.64 +0.7
1,815,592 - Dshi_1749 0.66 -4.7
1,815,619 - Dshi_1749 0.69 +0.6
1,815,645 + Dshi_1749 0.71 -0.4
1,815,755 - Dshi_1749 0.81 +2.1
1,815,755 - Dshi_1749 0.81 -0.3
1,816,132 + -0.6
1,816,135 - +2.1
1,816,240 - Dshi_1750 0.16 -3.3
1,816,258 + Dshi_1750 0.18 +0.8
1,816,463 - Dshi_1750 0.36 -0.7
1,816,532 + Dshi_1750 0.42 -1.4
1,816,634 - Dshi_1750 0.51 +0.8
1,816,685 - Dshi_1750 0.55 +2.3
1,816,821 - Dshi_1750 0.67 -1.0
1,816,875 + Dshi_1750 0.72 -1.0
1,816,875 + Dshi_1750 0.72 -0.0
1,816,875 + Dshi_1750 0.72 +0.3

Or see this region's nucleotide sequence