Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1673 and Dshi_1674 are separated by 252 nucleotides Dshi_1674 and Dshi_1675 are separated by 26 nucleotides Dshi_1675 and Dshi_1676 are separated by 11 nucleotides
Dshi_1673: Dshi_1673 - Ppx/GppA phosphatase (RefSeq), at 1,742,093 to 1,743,274
_1673
Dshi_1674: Dshi_1674 - hypothetical protein (RefSeq), at 1,743,527 to 1,743,829
_1674
Dshi_1675: Dshi_1675 - MetF protein-like protein (RefSeq), at 1,743,856 to 1,744,782
_1675
Dshi_1676: Dshi_1676 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 1,744,794 to 1,745,453
_1676
Position (kb)
1743
1744 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1742.782 kb on - strand, within Dshi_1673 at 1742.925 kb on + strand, within Dshi_1673 at 1743.009 kb on - strand, within Dshi_1673 at 1743.063 kb on + strand, within Dshi_1673 at 1743.063 kb on + strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.071 kb on - strand, within Dshi_1673 at 1743.125 kb on - strand, within Dshi_1673 at 1743.141 kb on - strand, within Dshi_1673 at 1743.175 kb on - strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.238 kb on + strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.246 kb on - strand at 1743.264 kb on + strand at 1743.419 kb on + strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.456 kb on - strand at 1743.507 kb on + strand at 1743.759 kb on - strand, within Dshi_1674 at 1743.776 kb on + strand, within Dshi_1674 at 1743.826 kb on - strand at 1743.857 kb on - strand at 1743.858 kb on - strand at 1743.889 kb on + strand at 1743.908 kb on + strand at 1743.985 kb on - strand, within Dshi_1675 at 1743.998 kb on - strand, within Dshi_1675 at 1744.087 kb on - strand, within Dshi_1675 at 1744.124 kb on + strand, within Dshi_1675 at 1744.217 kb on - strand, within Dshi_1675 at 1744.288 kb on - strand, within Dshi_1675 at 1744.299 kb on + strand, within Dshi_1675 at 1744.313 kb on - strand, within Dshi_1675 at 1744.596 kb on + strand, within Dshi_1675 at 1744.611 kb on + strand at 1744.686 kb on + strand, within Dshi_1675 at 1744.686 kb on + strand, within Dshi_1675 at 1744.694 kb on - strand at 1744.694 kb on - strand at 1744.694 kb on - strand at 1744.694 kb on - strand at 1744.743 kb on + strand at 1744.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,742,782 - Dshi_1673 0.58 -2.1 1,742,925 + Dshi_1673 0.70 -2.1 1,743,009 - Dshi_1673 0.77 -2.3 1,743,063 + Dshi_1673 0.82 -0.8 1,743,063 + Dshi_1673 0.82 -2.9 1,743,071 - Dshi_1673 0.83 -1.1 1,743,071 - Dshi_1673 0.83 -1.2 1,743,071 - Dshi_1673 0.83 -1.4 1,743,071 - Dshi_1673 0.83 -3.3 1,743,125 - Dshi_1673 0.87 -1.4 1,743,141 - Dshi_1673 0.89 -1.9 1,743,175 - +0.3 1,743,238 + -2.1 1,743,238 + -2.2 1,743,238 + +1.3 1,743,238 + -2.5 1,743,238 + -2.1 1,743,238 + -0.1 1,743,238 + -1.6 1,743,246 - -1.6 1,743,246 - -1.7 1,743,246 - -0.7 1,743,246 - -1.2 1,743,246 - -1.1 1,743,264 + +0.3 1,743,419 + +0.2 1,743,427 - -1.0 1,743,427 - -1.6 1,743,456 - -0.9 1,743,507 + -0.2 1,743,759 - Dshi_1674 0.77 -2.0 1,743,776 + Dshi_1674 0.82 -2.4 1,743,826 - -1.0 1,743,857 - +0.8 1,743,858 - +0.2 1,743,889 + -2.0 1,743,908 + -0.6 1,743,985 - Dshi_1675 0.14 -2.9 1,743,998 - Dshi_1675 0.15 -2.9 1,744,087 - Dshi_1675 0.25 +0.8 1,744,124 + Dshi_1675 0.29 -2.9 1,744,217 - Dshi_1675 0.39 -0.8 1,744,288 - Dshi_1675 0.47 +0.2 1,744,299 + Dshi_1675 0.48 +2.0 1,744,313 - Dshi_1675 0.49 +1.2 1,744,596 + Dshi_1675 0.80 +1.3 1,744,611 + +1.0 1,744,686 + Dshi_1675 0.90 +0.1 1,744,686 + Dshi_1675 0.90 -2.0 1,744,694 - +1.0 1,744,694 - +1.9 1,744,694 - +1.5 1,744,694 - -1.0 1,744,743 + +0.6 1,744,769 - -1.1
Or see this region's nucleotide sequence