Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1610

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1608 and Dshi_1609 are separated by 70 nucleotidesDshi_1609 and Dshi_1610 are separated by 188 nucleotidesDshi_1610 and Dshi_1611 overlap by 4 nucleotidesDshi_1611 and Dshi_1612 overlap by 4 nucleotides Dshi_1608: Dshi_1608 - 3-dehydroquinate synthase (RefSeq), at 1,671,408 to 1,672,559 _1608 Dshi_1609: Dshi_1609 - Shikimate kinase (RefSeq), at 1,672,630 to 1,673,187 _1609 Dshi_1610: Dshi_1610 - hypothetical protein (RefSeq), at 1,673,376 to 1,674,959 _1610 Dshi_1611: Dshi_1611 - integrase family protein (RefSeq), at 1,674,956 to 1,675,882 _1611 Dshi_1612: Dshi_1612 - hypothetical protein (RefSeq), at 1,675,879 to 1,676,685 _1612 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -3 -2 -1 0 1at 1672.616 kb on + strandat 1673.299 kb on - strandat 1673.445 kb on + strandat 1673.475 kb on + strandat 1673.491 kb on - strandat 1673.609 kb on + strand, within Dshi_1610at 1673.710 kb on - strand, within Dshi_1610at 1673.839 kb on - strand, within Dshi_1610at 1673.859 kb on + strand, within Dshi_1610at 1673.867 kb on - strand, within Dshi_1610at 1673.873 kb on - strand, within Dshi_1610at 1673.984 kb on - strand, within Dshi_1610at 1674.023 kb on - strand, within Dshi_1610at 1674.072 kb on + strand, within Dshi_1610at 1674.241 kb on - strand, within Dshi_1610at 1674.251 kb on - strand, within Dshi_1610at 1674.267 kb on + strand, within Dshi_1610at 1674.292 kb on - strand, within Dshi_1610at 1674.360 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.491 kb on + strand, within Dshi_1610at 1674.499 kb on - strand, within Dshi_1610at 1674.499 kb on - strand, within Dshi_1610at 1674.499 kb on - strand, within Dshi_1610at 1674.597 kb on - strand, within Dshi_1610at 1674.701 kb on - strand, within Dshi_1610at 1674.701 kb on - strand, within Dshi_1610at 1674.702 kb on + strand, within Dshi_1610at 1674.773 kb on - strand, within Dshi_1610at 1674.782 kb on + strand, within Dshi_1610at 1674.950 kb on + strandat 1675.029 kb on + strandat 1675.031 kb on + strandat 1675.082 kb on - strand, within Dshi_1611at 1675.096 kb on + strand, within Dshi_1611at 1675.104 kb on - strand, within Dshi_1611at 1675.124 kb on + strand, within Dshi_1611at 1675.214 kb on - strand, within Dshi_1611at 1675.501 kb on + strand, within Dshi_1611at 1675.506 kb on - strand, within Dshi_1611at 1675.509 kb on - strand, within Dshi_1611at 1675.585 kb on - strand, within Dshi_1611at 1675.690 kb on + strand, within Dshi_1611at 1675.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,672,616 + +1.5
1,673,299 - -2.6
1,673,445 + -3.2
1,673,475 + -2.9
1,673,491 - -1.0
1,673,609 + Dshi_1610 0.15 -0.4
1,673,710 - Dshi_1610 0.21 +0.8
1,673,839 - Dshi_1610 0.29 -2.1
1,673,859 + Dshi_1610 0.30 -0.1
1,673,867 - Dshi_1610 0.31 -1.5
1,673,873 - Dshi_1610 0.31 -0.2
1,673,984 - Dshi_1610 0.38 -0.3
1,674,023 - Dshi_1610 0.41 -0.3
1,674,072 + Dshi_1610 0.44 -1.2
1,674,241 - Dshi_1610 0.55 -2.1
1,674,251 - Dshi_1610 0.55 -0.1
1,674,267 + Dshi_1610 0.56 -2.5
1,674,292 - Dshi_1610 0.58 -2.6
1,674,360 + Dshi_1610 0.62 -0.6
1,674,491 + Dshi_1610 0.70 -0.2
1,674,491 + Dshi_1610 0.70 +1.5
1,674,491 + Dshi_1610 0.70 +1.5
1,674,491 + Dshi_1610 0.70 -0.1
1,674,491 + Dshi_1610 0.70 -0.6
1,674,491 + Dshi_1610 0.70 -0.5
1,674,499 - Dshi_1610 0.71 -1.1
1,674,499 - Dshi_1610 0.71 -0.5
1,674,499 - Dshi_1610 0.71 +0.3
1,674,597 - Dshi_1610 0.77 -3.6
1,674,701 - Dshi_1610 0.84 -0.7
1,674,701 - Dshi_1610 0.84 -0.6
1,674,702 + Dshi_1610 0.84 -1.0
1,674,773 - Dshi_1610 0.88 -0.9
1,674,782 + Dshi_1610 0.89 -0.7
1,674,950 + +0.1
1,675,029 + -1.2
1,675,031 + -0.0
1,675,082 - Dshi_1611 0.14 -0.6
1,675,096 + Dshi_1611 0.15 -2.0
1,675,104 - Dshi_1611 0.16 +0.5
1,675,124 + Dshi_1611 0.18 -3.2
1,675,214 - Dshi_1611 0.28 -1.2
1,675,501 + Dshi_1611 0.59 -1.0
1,675,506 - Dshi_1611 0.59 -0.3
1,675,509 - Dshi_1611 0.60 -1.2
1,675,585 - Dshi_1611 0.68 -0.0
1,675,690 + Dshi_1611 0.79 -1.0
1,675,884 - +0.1

Or see this region's nucleotide sequence