Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1608 and Dshi_1609 are separated by 70 nucleotides Dshi_1609 and Dshi_1610 are separated by 188 nucleotides Dshi_1610 and Dshi_1611 overlap by 4 nucleotides Dshi_1611 and Dshi_1612 overlap by 4 nucleotides
Dshi_1608: Dshi_1608 - 3-dehydroquinate synthase (RefSeq), at 1,671,408 to 1,672,559
_1608
Dshi_1609: Dshi_1609 - Shikimate kinase (RefSeq), at 1,672,630 to 1,673,187
_1609
Dshi_1610: Dshi_1610 - hypothetical protein (RefSeq), at 1,673,376 to 1,674,959
_1610
Dshi_1611: Dshi_1611 - integrase family protein (RefSeq), at 1,674,956 to 1,675,882
_1611
Dshi_1612: Dshi_1612 - hypothetical protein (RefSeq), at 1,675,879 to 1,676,685
_1612
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1672.616 kb on + strand at 1673.299 kb on - strand at 1673.445 kb on + strand at 1673.475 kb on + strand at 1673.491 kb on - strand at 1673.609 kb on + strand, within Dshi_1610 at 1673.710 kb on - strand, within Dshi_1610 at 1673.839 kb on - strand, within Dshi_1610 at 1673.859 kb on + strand, within Dshi_1610 at 1673.867 kb on - strand, within Dshi_1610 at 1673.873 kb on - strand, within Dshi_1610 at 1673.984 kb on - strand, within Dshi_1610 at 1674.023 kb on - strand, within Dshi_1610 at 1674.072 kb on + strand, within Dshi_1610 at 1674.241 kb on - strand, within Dshi_1610 at 1674.251 kb on - strand, within Dshi_1610 at 1674.267 kb on + strand, within Dshi_1610 at 1674.292 kb on - strand, within Dshi_1610 at 1674.360 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.491 kb on + strand, within Dshi_1610 at 1674.499 kb on - strand, within Dshi_1610 at 1674.499 kb on - strand, within Dshi_1610 at 1674.499 kb on - strand, within Dshi_1610 at 1674.597 kb on - strand, within Dshi_1610 at 1674.701 kb on - strand, within Dshi_1610 at 1674.701 kb on - strand, within Dshi_1610 at 1674.702 kb on + strand, within Dshi_1610 at 1674.773 kb on - strand, within Dshi_1610 at 1674.782 kb on + strand, within Dshi_1610 at 1674.950 kb on + strand at 1675.029 kb on + strand at 1675.031 kb on + strand at 1675.082 kb on - strand, within Dshi_1611 at 1675.096 kb on + strand, within Dshi_1611 at 1675.104 kb on - strand, within Dshi_1611 at 1675.124 kb on + strand, within Dshi_1611 at 1675.214 kb on - strand, within Dshi_1611 at 1675.501 kb on + strand, within Dshi_1611 at 1675.506 kb on - strand, within Dshi_1611 at 1675.509 kb on - strand, within Dshi_1611 at 1675.585 kb on - strand, within Dshi_1611 at 1675.690 kb on + strand, within Dshi_1611 at 1675.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,672,616 + +1.5 1,673,299 - -2.6 1,673,445 + -3.2 1,673,475 + -2.9 1,673,491 - -1.0 1,673,609 + Dshi_1610 0.15 -0.4 1,673,710 - Dshi_1610 0.21 +0.8 1,673,839 - Dshi_1610 0.29 -2.1 1,673,859 + Dshi_1610 0.30 -0.1 1,673,867 - Dshi_1610 0.31 -1.5 1,673,873 - Dshi_1610 0.31 -0.2 1,673,984 - Dshi_1610 0.38 -0.3 1,674,023 - Dshi_1610 0.41 -0.3 1,674,072 + Dshi_1610 0.44 -1.2 1,674,241 - Dshi_1610 0.55 -2.1 1,674,251 - Dshi_1610 0.55 -0.1 1,674,267 + Dshi_1610 0.56 -2.5 1,674,292 - Dshi_1610 0.58 -2.6 1,674,360 + Dshi_1610 0.62 -0.6 1,674,491 + Dshi_1610 0.70 -0.2 1,674,491 + Dshi_1610 0.70 +1.5 1,674,491 + Dshi_1610 0.70 +1.5 1,674,491 + Dshi_1610 0.70 -0.1 1,674,491 + Dshi_1610 0.70 -0.6 1,674,491 + Dshi_1610 0.70 -0.5 1,674,499 - Dshi_1610 0.71 -1.1 1,674,499 - Dshi_1610 0.71 -0.5 1,674,499 - Dshi_1610 0.71 +0.3 1,674,597 - Dshi_1610 0.77 -3.6 1,674,701 - Dshi_1610 0.84 -0.7 1,674,701 - Dshi_1610 0.84 -0.6 1,674,702 + Dshi_1610 0.84 -1.0 1,674,773 - Dshi_1610 0.88 -0.9 1,674,782 + Dshi_1610 0.89 -0.7 1,674,950 + +0.1 1,675,029 + -1.2 1,675,031 + -0.0 1,675,082 - Dshi_1611 0.14 -0.6 1,675,096 + Dshi_1611 0.15 -2.0 1,675,104 - Dshi_1611 0.16 +0.5 1,675,124 + Dshi_1611 0.18 -3.2 1,675,214 - Dshi_1611 0.28 -1.2 1,675,501 + Dshi_1611 0.59 -1.0 1,675,506 - Dshi_1611 0.59 -0.3 1,675,509 - Dshi_1611 0.60 -1.2 1,675,585 - Dshi_1611 0.68 -0.0 1,675,690 + Dshi_1611 0.79 -1.0 1,675,884 - +0.1
Or see this region's nucleotide sequence