Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1575 and Dshi_1576 overlap by 4 nucleotides Dshi_1576 and Dshi_1577 are separated by 142 nucleotides
Dshi_1575: Dshi_1575 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,642,326 to 1,643,399
_1575
Dshi_1576: Dshi_1576 - putative TIM-barrel protein, nifR3 family (RefSeq), at 1,643,396 to 1,644,397
_1576
Dshi_1577: Dshi_1577 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (RefSeq), at 1,644,540 to 1,645,742
_1577
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1642.451 kb on - strand, within Dshi_1575 at 1642.528 kb on - strand, within Dshi_1575 at 1642.702 kb on + strand, within Dshi_1575 at 1642.721 kb on - strand, within Dshi_1575 at 1642.777 kb on - strand, within Dshi_1575 at 1642.847 kb on + strand, within Dshi_1575 at 1642.897 kb on + strand, within Dshi_1575 at 1642.928 kb on + strand, within Dshi_1575 at 1642.944 kb on - strand, within Dshi_1575 at 1643.010 kb on - strand, within Dshi_1575 at 1643.090 kb on + strand, within Dshi_1575 at 1643.104 kb on - strand, within Dshi_1575 at 1643.129 kb on - strand, within Dshi_1575 at 1643.386 kb on - strand at 1643.548 kb on - strand, within Dshi_1576 at 1643.622 kb on - strand, within Dshi_1576 at 1643.632 kb on - strand, within Dshi_1576 at 1643.764 kb on - strand, within Dshi_1576 at 1643.805 kb on + strand, within Dshi_1576 at 1643.940 kb on - strand, within Dshi_1576 at 1644.103 kb on - strand, within Dshi_1576 at 1644.107 kb on - strand, within Dshi_1576 at 1644.132 kb on + strand, within Dshi_1576 at 1644.140 kb on - strand, within Dshi_1576 at 1644.158 kb on + strand, within Dshi_1576 at 1644.213 kb on + strand, within Dshi_1576 at 1644.224 kb on + strand, within Dshi_1576 at 1644.245 kb on - strand, within Dshi_1576 at 1644.299 kb on - strand at 1644.299 kb on - strand at 1644.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,642,451 - Dshi_1575 0.12 -1.4 1,642,528 - Dshi_1575 0.19 -1.2 1,642,702 + Dshi_1575 0.35 -3.4 1,642,721 - Dshi_1575 0.37 -2.4 1,642,777 - Dshi_1575 0.42 +1.2 1,642,847 + Dshi_1575 0.49 -1.2 1,642,897 + Dshi_1575 0.53 -2.4 1,642,928 + Dshi_1575 0.56 -0.7 1,642,944 - Dshi_1575 0.58 -2.4 1,643,010 - Dshi_1575 0.64 +0.1 1,643,090 + Dshi_1575 0.71 -1.1 1,643,104 - Dshi_1575 0.72 +2.1 1,643,129 - Dshi_1575 0.75 -0.5 1,643,386 - -0.3 1,643,548 - Dshi_1576 0.15 -0.4 1,643,622 - Dshi_1576 0.23 +1.7 1,643,632 - Dshi_1576 0.24 -1.8 1,643,764 - Dshi_1576 0.37 -0.1 1,643,805 + Dshi_1576 0.41 +0.7 1,643,940 - Dshi_1576 0.54 -1.3 1,644,103 - Dshi_1576 0.71 +1.0 1,644,107 - Dshi_1576 0.71 +0.4 1,644,132 + Dshi_1576 0.73 +1.7 1,644,140 - Dshi_1576 0.74 +0.8 1,644,158 + Dshi_1576 0.76 -1.5 1,644,213 + Dshi_1576 0.82 -0.1 1,644,224 + Dshi_1576 0.83 -2.9 1,644,245 - Dshi_1576 0.85 +0.5 1,644,299 - -1.5 1,644,299 - -1.1 1,644,552 + -1.6
Or see this region's nucleotide sequence