Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1559 and Dshi_1560 are separated by 137 nucleotides Dshi_1560 and Dshi_1561 are separated by 132 nucleotides Dshi_1561 and Dshi_1562 are separated by 404 nucleotides
Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701
_1559
Dshi_1560: Dshi_1560 - hypothetical protein (RefSeq), at 1,621,839 to 1,622,270
_1560
Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885
_1561
Dshi_1562: Dshi_1562 - hypothetical protein (RefSeq), at 1,626,290 to 1,626,820
_1562
Position (kb)
1622
1623
1624
1625
1626 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1621.638 kb on - strand at 1621.646 kb on - strand at 1621.824 kb on + strand at 1622.044 kb on + strand, within Dshi_1560 at 1622.106 kb on + strand, within Dshi_1560 at 1622.358 kb on + strand at 1622.467 kb on + strand at 1622.649 kb on - strand at 1622.670 kb on - strand at 1623.664 kb on + strand, within Dshi_1561 at 1623.723 kb on + strand, within Dshi_1561 at 1624.115 kb on + strand, within Dshi_1561 at 1624.168 kb on - strand, within Dshi_1561 at 1624.385 kb on + strand, within Dshi_1561 at 1624.537 kb on + strand, within Dshi_1561 at 1624.581 kb on - strand, within Dshi_1561 at 1624.941 kb on + strand, within Dshi_1561 at 1624.947 kb on - strand, within Dshi_1561 at 1625.003 kb on + strand, within Dshi_1561 at 1625.035 kb on + strand, within Dshi_1561 at 1625.043 kb on - strand, within Dshi_1561 at 1625.370 kb on - strand, within Dshi_1561 at 1625.370 kb on - strand, within Dshi_1561 at 1625.607 kb on + strand at 1625.838 kb on + strand at 1625.915 kb on + strand at 1625.985 kb on + strand at 1626.139 kb on + strand at 1626.383 kb on - strand, within Dshi_1562 at 1626.468 kb on - strand, within Dshi_1562 at 1626.561 kb on + strand, within Dshi_1562 at 1626.584 kb on - strand, within Dshi_1562 at 1626.592 kb on + strand, within Dshi_1562 at 1626.592 kb on + strand, within Dshi_1562 at 1626.629 kb on - strand, within Dshi_1562 at 1626.659 kb on - strand, within Dshi_1562 at 1626.684 kb on + strand, within Dshi_1562 at 1626.732 kb on + strand, within Dshi_1562
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,621,638 - +0.8 1,621,646 - +0.3 1,621,824 + -1.8 1,622,044 + Dshi_1560 0.47 +0.1 1,622,106 + Dshi_1560 0.62 +0.7 1,622,358 + +0.1 1,622,467 + -1.4 1,622,649 - +0.9 1,622,670 - +0.1 1,623,664 + Dshi_1561 0.36 -1.3 1,623,723 + Dshi_1561 0.38 -0.1 1,624,115 + Dshi_1561 0.49 +0.5 1,624,168 - Dshi_1561 0.51 -2.3 1,624,385 + Dshi_1561 0.57 -0.7 1,624,537 + Dshi_1561 0.61 +2.5 1,624,581 - Dshi_1561 0.63 -1.1 1,624,941 + Dshi_1561 0.73 -0.5 1,624,947 - Dshi_1561 0.73 -1.2 1,625,003 + Dshi_1561 0.75 -1.6 1,625,035 + Dshi_1561 0.76 -0.3 1,625,043 - Dshi_1561 0.76 -2.1 1,625,370 - Dshi_1561 0.85 -3.1 1,625,370 - Dshi_1561 0.85 -1.3 1,625,607 + +0.3 1,625,838 + +0.2 1,625,915 + -0.7 1,625,985 + +0.9 1,626,139 + +0.0 1,626,383 - Dshi_1562 0.18 -0.1 1,626,468 - Dshi_1562 0.34 +0.2 1,626,561 + Dshi_1562 0.51 +1.3 1,626,584 - Dshi_1562 0.55 +0.1 1,626,592 + Dshi_1562 0.57 +0.3 1,626,592 + Dshi_1562 0.57 +0.3 1,626,629 - Dshi_1562 0.64 +1.2 1,626,659 - Dshi_1562 0.69 +0.6 1,626,684 + Dshi_1562 0.74 +1.4 1,626,732 + Dshi_1562 0.83 -1.6
Or see this region's nucleotide sequence