Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1287

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1286 and Dshi_1287 overlap by 68 nucleotidesDshi_1287 and Dshi_1288 are separated by 345 nucleotides Dshi_1286: Dshi_1286 - hypothetical protein (RefSeq), at 1,338,659 to 1,339,942 _1286 Dshi_1287: Dshi_1287 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,339,875 to 1,340,969 _1287 Dshi_1288: Dshi_1288 - amidohydrolase (RefSeq), at 1,341,315 to 1,342,481 _1288 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -2 -1 0 1at 1338.992 kb on - strand, within Dshi_1286at 1339.067 kb on - strand, within Dshi_1286at 1339.079 kb on - strand, within Dshi_1286at 1340.275 kb on + strand, within Dshi_1287at 1340.351 kb on - strand, within Dshi_1287at 1340.740 kb on - strand, within Dshi_1287at 1340.892 kb on + strandat 1340.931 kb on - strandat 1340.945 kb on + strandat 1340.964 kb on + strandat 1341.052 kb on + strandat 1341.240 kb on + strandat 1341.500 kb on + strand, within Dshi_1288at 1341.523 kb on - strand, within Dshi_1288at 1341.603 kb on - strand, within Dshi_1288at 1341.964 kb on + strand, within Dshi_1288

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,338,992 - Dshi_1286 0.26 +0.4
1,339,067 - Dshi_1286 0.32 -0.4
1,339,079 - Dshi_1286 0.33 +0.3
1,340,275 + Dshi_1287 0.37 -2.0
1,340,351 - Dshi_1287 0.43 -1.2
1,340,740 - Dshi_1287 0.79 +1.1
1,340,892 + +1.3
1,340,931 - -0.4
1,340,945 + -2.3
1,340,964 + -0.3
1,341,052 + -0.9
1,341,240 + -2.0
1,341,500 + Dshi_1288 0.16 -1.0
1,341,523 - Dshi_1288 0.18 +0.1
1,341,603 - Dshi_1288 0.25 +1.1
1,341,964 + Dshi_1288 0.56 -1.4

Or see this region's nucleotide sequence