Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1286

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1285 and Dshi_1286 are separated by 204 nucleotidesDshi_1286 and Dshi_1287 overlap by 68 nucleotides Dshi_1285: Dshi_1285 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 1,337,555 to 1,338,454 _1285 Dshi_1286: Dshi_1286 - hypothetical protein (RefSeq), at 1,338,659 to 1,339,942 _1286 Dshi_1287: Dshi_1287 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,339,875 to 1,340,969 _1287 Position (kb) 1338 1339 1340Strain fitness (log2 ratio) -2 -1 0 1at 1338.518 kb on + strandat 1338.584 kb on - strandat 1338.693 kb on - strandat 1338.742 kb on + strandat 1338.790 kb on + strand, within Dshi_1286at 1338.800 kb on + strand, within Dshi_1286at 1338.803 kb on - strand, within Dshi_1286at 1338.808 kb on - strand, within Dshi_1286at 1338.992 kb on - strand, within Dshi_1286at 1339.067 kb on - strand, within Dshi_1286at 1339.079 kb on - strand, within Dshi_1286at 1340.275 kb on + strand, within Dshi_1287at 1340.351 kb on - strand, within Dshi_1287at 1340.740 kb on - strand, within Dshi_1287at 1340.892 kb on + strandat 1340.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,338,518 + +1.2
1,338,584 - +0.4
1,338,693 - -0.5
1,338,742 + +0.2
1,338,790 + Dshi_1286 0.10 -0.5
1,338,800 + Dshi_1286 0.11 +1.3
1,338,803 - Dshi_1286 0.11 +0.2
1,338,808 - Dshi_1286 0.12 +0.7
1,338,992 - Dshi_1286 0.26 +0.4
1,339,067 - Dshi_1286 0.32 -0.4
1,339,079 - Dshi_1286 0.33 +0.3
1,340,275 + Dshi_1287 0.37 -2.0
1,340,351 - Dshi_1287 0.43 -1.2
1,340,740 - Dshi_1287 0.79 +1.1
1,340,892 + +1.3
1,340,931 - -0.4

Or see this region's nucleotide sequence