Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1261

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1259 and Dshi_1260 are separated by 10 nucleotidesDshi_1260 and Dshi_1261 are separated by 89 nucleotidesDshi_1261 and Dshi_1262 are separated by 6 nucleotides Dshi_1259: Dshi_1259 - heavy metal translocating P-type ATPase (RefSeq), at 1,305,092 to 1,307,596 _1259 Dshi_1260: Dshi_1260 - transcriptional regulator, MerR family (RefSeq), at 1,307,607 to 1,308,002 _1260 Dshi_1261: Dshi_1261 - sodium/glutamate symporter (RefSeq), at 1,308,092 to 1,309,300 _1261 Dshi_1262: Dshi_1262 - acriflavin resistance protein (RefSeq), at 1,309,307 to 1,312,360 _1262 Position (kb) 1308 1309 1310Strain fitness (log2 ratio) -2 -1 0 1 2at 1307.131 kb on + strand, within Dshi_1259at 1307.223 kb on + strand, within Dshi_1259at 1307.252 kb on + strand, within Dshi_1259at 1307.322 kb on - strand, within Dshi_1259at 1307.353 kb on + strandat 1307.409 kb on + strandat 1307.653 kb on - strand, within Dshi_1260at 1307.780 kb on - strand, within Dshi_1260at 1307.781 kb on + strand, within Dshi_1260at 1308.051 kb on - strandat 1308.070 kb on - strandat 1308.128 kb on + strandat 1308.133 kb on + strandat 1308.209 kb on - strandat 1308.270 kb on - strand, within Dshi_1261at 1308.303 kb on + strand, within Dshi_1261at 1308.418 kb on + strand, within Dshi_1261at 1308.666 kb on + strand, within Dshi_1261at 1308.676 kb on - strand, within Dshi_1261at 1308.857 kb on + strand, within Dshi_1261at 1308.902 kb on + strand, within Dshi_1261at 1309.018 kb on - strand, within Dshi_1261at 1309.061 kb on - strand, within Dshi_1261at 1309.126 kb on - strand, within Dshi_1261at 1309.293 kb on + strandat 1309.311 kb on - strandat 1309.648 kb on - strand, within Dshi_1262at 1309.759 kb on + strand, within Dshi_1262at 1309.778 kb on - strand, within Dshi_1262at 1309.784 kb on + strand, within Dshi_1262at 1310.053 kb on - strand, within Dshi_1262at 1310.146 kb on - strand, within Dshi_1262at 1310.168 kb on + strand, within Dshi_1262at 1310.176 kb on - strand, within Dshi_1262at 1310.176 kb on - strand, within Dshi_1262at 1310.179 kb on - strand, within Dshi_1262

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,307,131 + Dshi_1259 0.81 +0.3
1,307,223 + Dshi_1259 0.85 -0.2
1,307,252 + Dshi_1259 0.86 -1.6
1,307,322 - Dshi_1259 0.89 -2.5
1,307,353 + +1.0
1,307,409 + -1.4
1,307,653 - Dshi_1260 0.12 +0.1
1,307,780 - Dshi_1260 0.44 +0.4
1,307,781 + Dshi_1260 0.44 +0.1
1,308,051 - -0.8
1,308,070 - -0.3
1,308,128 + -0.8
1,308,133 + +1.9
1,308,209 - -0.3
1,308,270 - Dshi_1261 0.15 +0.3
1,308,303 + Dshi_1261 0.17 +1.0
1,308,418 + Dshi_1261 0.27 +0.6
1,308,666 + Dshi_1261 0.47 -0.5
1,308,676 - Dshi_1261 0.48 -1.5
1,308,857 + Dshi_1261 0.63 -2.0
1,308,902 + Dshi_1261 0.67 -0.3
1,309,018 - Dshi_1261 0.77 +0.3
1,309,061 - Dshi_1261 0.80 -1.7
1,309,126 - Dshi_1261 0.86 +0.3
1,309,293 + -0.5
1,309,311 - -0.4
1,309,648 - Dshi_1262 0.11 -1.7
1,309,759 + Dshi_1262 0.15 +1.5
1,309,778 - Dshi_1262 0.15 -1.3
1,309,784 + Dshi_1262 0.16 -1.3
1,310,053 - Dshi_1262 0.24 -1.6
1,310,146 - Dshi_1262 0.27 -0.5
1,310,168 + Dshi_1262 0.28 -1.1
1,310,176 - Dshi_1262 0.28 -1.0
1,310,176 - Dshi_1262 0.28 +0.6
1,310,179 - Dshi_1262 0.29 -0.5

Or see this region's nucleotide sequence