Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1259

Experiment: m.b. Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1257 and Dshi_1258 are separated by 45 nucleotidesDshi_1258 and Dshi_1259 are separated by 86 nucleotidesDshi_1259 and Dshi_1260 are separated by 10 nucleotidesDshi_1260 and Dshi_1261 are separated by 89 nucleotides Dshi_1257: Dshi_1257 - hypothetical protein (RefSeq), at 1,303,935 to 1,304,216 _1257 Dshi_1258: Dshi_1258 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,304,262 to 1,305,005 _1258 Dshi_1259: Dshi_1259 - heavy metal translocating P-type ATPase (RefSeq), at 1,305,092 to 1,307,596 _1259 Dshi_1260: Dshi_1260 - transcriptional regulator, MerR family (RefSeq), at 1,307,607 to 1,308,002 _1260 Dshi_1261: Dshi_1261 - sodium/glutamate symporter (RefSeq), at 1,308,092 to 1,309,300 _1261 Position (kb) 1305 1306 1307 1308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1304.262 kb on - strandat 1304.310 kb on + strandat 1304.320 kb on + strandat 1304.377 kb on + strand, within Dshi_1258at 1304.523 kb on - strand, within Dshi_1258at 1304.710 kb on + strand, within Dshi_1258at 1304.837 kb on + strand, within Dshi_1258at 1304.852 kb on - strand, within Dshi_1258at 1304.890 kb on - strand, within Dshi_1258at 1304.917 kb on - strand, within Dshi_1258at 1304.985 kb on + strandat 1304.993 kb on - strandat 1305.018 kb on + strandat 1305.094 kb on + strandat 1305.101 kb on + strandat 1305.101 kb on + strandat 1305.180 kb on + strandat 1305.456 kb on + strandat 1305.459 kb on + strand, within Dshi_1259at 1305.539 kb on - strand, within Dshi_1259at 1305.829 kb on - strand, within Dshi_1259at 1305.936 kb on + strand, within Dshi_1259at 1305.997 kb on + strandat 1306.005 kb on - strand, within Dshi_1259at 1306.115 kb on - strand, within Dshi_1259at 1306.218 kb on - strand, within Dshi_1259at 1306.297 kb on + strand, within Dshi_1259at 1306.305 kb on - strand, within Dshi_1259at 1306.410 kb on + strand, within Dshi_1259at 1306.418 kb on - strand, within Dshi_1259at 1306.572 kb on - strand, within Dshi_1259at 1307.064 kb on - strand, within Dshi_1259at 1307.131 kb on + strand, within Dshi_1259at 1307.223 kb on + strand, within Dshi_1259at 1307.252 kb on + strand, within Dshi_1259at 1307.322 kb on - strand, within Dshi_1259at 1307.353 kb on + strandat 1307.409 kb on + strandat 1307.653 kb on - strand, within Dshi_1260at 1307.780 kb on - strand, within Dshi_1260at 1307.781 kb on + strand, within Dshi_1260at 1308.051 kb on - strandat 1308.070 kb on - strandat 1308.128 kb on + strandat 1308.133 kb on + strandat 1308.209 kb on - strandat 1308.270 kb on - strand, within Dshi_1261at 1308.303 kb on + strand, within Dshi_1261at 1308.418 kb on + strand, within Dshi_1261

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
remove
1,304,262 - +0.4
1,304,310 + +0.8
1,304,320 + +2.1
1,304,377 + Dshi_1258 0.15 -1.0
1,304,523 - Dshi_1258 0.35 -3.3
1,304,710 + Dshi_1258 0.60 -1.0
1,304,837 + Dshi_1258 0.77 +1.7
1,304,852 - Dshi_1258 0.79 +0.6
1,304,890 - Dshi_1258 0.84 -0.2
1,304,917 - Dshi_1258 0.88 -0.3
1,304,985 + +0.1
1,304,993 - +0.9
1,305,018 + -3.2
1,305,094 + +0.5
1,305,101 + +2.2
1,305,101 + -0.9
1,305,180 + +0.3
1,305,456 + +1.2
1,305,459 + Dshi_1259 0.15 -1.6
1,305,539 - Dshi_1259 0.18 +0.2
1,305,829 - Dshi_1259 0.29 -1.5
1,305,936 + Dshi_1259 0.34 -0.7
1,305,997 + -1.6
1,306,005 - Dshi_1259 0.36 +2.1
1,306,115 - Dshi_1259 0.41 +0.4
1,306,218 - Dshi_1259 0.45 -1.0
1,306,297 + Dshi_1259 0.48 +0.3
1,306,305 - Dshi_1259 0.48 +0.4
1,306,410 + Dshi_1259 0.53 +0.3
1,306,418 - Dshi_1259 0.53 +0.5
1,306,572 - Dshi_1259 0.59 +0.6
1,307,064 - Dshi_1259 0.79 -0.3
1,307,131 + Dshi_1259 0.81 +0.3
1,307,223 + Dshi_1259 0.85 -0.2
1,307,252 + Dshi_1259 0.86 -1.6
1,307,322 - Dshi_1259 0.89 -2.5
1,307,353 + +1.0
1,307,409 + -1.4
1,307,653 - Dshi_1260 0.12 +0.1
1,307,780 - Dshi_1260 0.44 +0.4
1,307,781 + Dshi_1260 0.44 +0.1
1,308,051 - -0.8
1,308,070 - -0.3
1,308,128 + -0.8
1,308,133 + +1.9
1,308,209 - -0.3
1,308,270 - Dshi_1261 0.15 +0.3
1,308,303 + Dshi_1261 0.17 +1.0
1,308,418 + Dshi_1261 0.27 +0.6

Or see this region's nucleotide sequence