Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1240 and Dshi_1241 overlap by 4 nucleotides Dshi_1241 and Dshi_1242 overlap by 4 nucleotides Dshi_1242 and Dshi_1243 overlap by 4 nucleotides Dshi_1243 and Dshi_1244 overlap by 1 nucleotides
Dshi_1240: Dshi_1240 - SMP-30/Gluconolaconase/LRE domain protein (RefSeq), at 1,287,164 to 1,288,024
_1240
Dshi_1241: Dshi_1241 - KDPG and KHG aldolase (RefSeq), at 1,288,021 to 1,288,626
_1241
Dshi_1242: Dshi_1242 - 2-dehydro-3-deoxygalactonokinase (RefSeq), at 1,288,623 to 1,289,519
_1242
Dshi_1243: Dshi_1243 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,289,516 to 1,290,292
_1243
Dshi_1244: Dshi_1244 - Dihydroxy-acid dehydratase (RefSeq), at 1,290,292 to 1,292,001
_1244
Position (kb)
1288
1289
1290 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1287.716 kb on - strand, within Dshi_1240 at 1287.887 kb on + strand, within Dshi_1240 at 1288.013 kb on - strand at 1288.071 kb on + strand at 1288.072 kb on + strand at 1288.098 kb on - strand, within Dshi_1241 at 1288.119 kb on - strand, within Dshi_1241 at 1288.181 kb on + strand, within Dshi_1241 at 1288.220 kb on + strand, within Dshi_1241 at 1288.281 kb on + strand, within Dshi_1241 at 1288.352 kb on + strand, within Dshi_1241 at 1288.360 kb on - strand, within Dshi_1241 at 1288.368 kb on + strand, within Dshi_1241 at 1288.381 kb on - strand, within Dshi_1241 at 1288.422 kb on + strand, within Dshi_1241 at 1288.476 kb on - strand, within Dshi_1241 at 1288.595 kb on - strand at 1288.630 kb on + strand at 1288.638 kb on - strand at 1288.656 kb on + strand at 1288.662 kb on - strand at 1288.728 kb on + strand, within Dshi_1242 at 1288.753 kb on - strand, within Dshi_1242 at 1288.783 kb on - strand, within Dshi_1242 at 1288.927 kb on - strand, within Dshi_1242 at 1288.939 kb on - strand, within Dshi_1242 at 1288.952 kb on - strand, within Dshi_1242 at 1289.009 kb on + strand, within Dshi_1242 at 1289.197 kb on - strand, within Dshi_1242 at 1289.254 kb on + strand, within Dshi_1242 at 1289.257 kb on - strand, within Dshi_1242 at 1289.262 kb on - strand, within Dshi_1242 at 1289.291 kb on + strand, within Dshi_1242 at 1289.674 kb on - strand, within Dshi_1243 at 1289.833 kb on + strand, within Dshi_1243 at 1289.887 kb on + strand, within Dshi_1243 at 1290.110 kb on + strand, within Dshi_1243 at 1290.118 kb on - strand, within Dshi_1243 at 1290.205 kb on + strand, within Dshi_1243 at 1290.208 kb on - strand, within Dshi_1243 at 1290.339 kb on - strand at 1290.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,287,716 - Dshi_1240 0.64 +0.0 1,287,887 + Dshi_1240 0.84 -0.1 1,288,013 - -1.1 1,288,071 + +1.0 1,288,072 + -2.6 1,288,098 - Dshi_1241 0.13 -1.0 1,288,119 - Dshi_1241 0.16 -0.5 1,288,181 + Dshi_1241 0.26 +1.1 1,288,220 + Dshi_1241 0.33 -2.0 1,288,281 + Dshi_1241 0.43 -0.7 1,288,352 + Dshi_1241 0.55 -1.0 1,288,360 - Dshi_1241 0.56 -2.0 1,288,368 + Dshi_1241 0.57 -0.3 1,288,381 - Dshi_1241 0.59 +0.3 1,288,422 + Dshi_1241 0.66 +0.6 1,288,476 - Dshi_1241 0.75 -1.2 1,288,595 - -0.4 1,288,630 + +0.2 1,288,638 - -0.5 1,288,656 + +0.5 1,288,662 - -3.6 1,288,728 + Dshi_1242 0.12 +0.6 1,288,753 - Dshi_1242 0.14 +0.5 1,288,783 - Dshi_1242 0.18 -0.8 1,288,927 - Dshi_1242 0.34 -0.9 1,288,939 - Dshi_1242 0.35 -1.3 1,288,952 - Dshi_1242 0.37 -0.7 1,289,009 + Dshi_1242 0.43 +0.1 1,289,197 - Dshi_1242 0.64 +0.7 1,289,254 + Dshi_1242 0.70 -0.3 1,289,257 - Dshi_1242 0.71 -0.4 1,289,262 - Dshi_1242 0.71 -2.8 1,289,291 + Dshi_1242 0.74 +0.4 1,289,674 - Dshi_1243 0.20 +0.8 1,289,833 + Dshi_1243 0.41 +0.1 1,289,887 + Dshi_1243 0.48 -1.0 1,290,110 + Dshi_1243 0.76 -0.0 1,290,118 - Dshi_1243 0.77 +0.2 1,290,205 + Dshi_1243 0.89 -1.8 1,290,208 - Dshi_1243 0.89 -0.6 1,290,339 - +0.7 1,290,380 + +0.1
Or see this region's nucleotide sequence