Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0882 and Dshi_0883 are separated by 4 nucleotides Dshi_0883 and Dshi_0884 are separated by 219 nucleotides Dshi_0884 and Dshi_0885 overlap by 4 nucleotides Dshi_0885 and Dshi_0886 are separated by 3 nucleotides
Dshi_0882: Dshi_0882 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 897,647 to 898,615
_0882
Dshi_0883: Dshi_0883 - hypothetical protein (RefSeq), at 898,620 to 898,811
_0883
Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113
_0884
Dshi_0885: Dshi_0885 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 900,110 to 901,078
_0885
Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924
_0886
Position (kb)
899
900
901 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 898.031 kb on - strand, within Dshi_0882 at 898.065 kb on + strand, within Dshi_0882 at 898.228 kb on - strand, within Dshi_0882 at 898.262 kb on + strand, within Dshi_0882 at 898.317 kb on + strand, within Dshi_0882 at 898.351 kb on - strand, within Dshi_0882 at 898.562 kb on - strand at 898.653 kb on + strand, within Dshi_0883 at 898.653 kb on - strand, within Dshi_0883 at 898.822 kb on + strand at 898.869 kb on + strand at 899.024 kb on - strand at 899.064 kb on + strand at 899.151 kb on + strand, within Dshi_0884 at 899.328 kb on + strand, within Dshi_0884 at 899.437 kb on + strand, within Dshi_0884 at 899.515 kb on + strand, within Dshi_0884 at 899.550 kb on - strand, within Dshi_0884 at 899.589 kb on - strand, within Dshi_0884 at 899.757 kb on - strand, within Dshi_0884 at 899.765 kb on - strand, within Dshi_0884 at 899.785 kb on + strand at 899.815 kb on + strand, within Dshi_0884 at 899.846 kb on - strand, within Dshi_0884 at 899.957 kb on + strand, within Dshi_0884 at 900.076 kb on - strand at 900.147 kb on + strand at 900.201 kb on - strand at 900.224 kb on - strand, within Dshi_0885 at 900.392 kb on - strand, within Dshi_0885 at 900.428 kb on - strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.650 kb on + strand, within Dshi_0885 at 900.772 kb on - strand, within Dshi_0885 at 900.831 kb on + strand, within Dshi_0885 at 900.839 kb on - strand, within Dshi_0885 at 900.875 kb on - strand, within Dshi_0885 at 900.967 kb on - strand, within Dshi_0885 at 901.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 898,031 - Dshi_0882 0.40 +0.7 898,065 + Dshi_0882 0.43 -1.3 898,228 - Dshi_0882 0.60 -0.6 898,262 + Dshi_0882 0.63 +1.3 898,317 + Dshi_0882 0.69 +1.1 898,351 - Dshi_0882 0.73 -0.8 898,562 - -1.9 898,653 + Dshi_0883 0.17 +0.2 898,653 - Dshi_0883 0.17 +1.9 898,822 + -0.8 898,869 + -0.7 899,024 - -1.6 899,064 + +0.4 899,151 + Dshi_0884 0.11 +0.7 899,328 + Dshi_0884 0.27 +0.4 899,437 + Dshi_0884 0.37 -1.7 899,515 + Dshi_0884 0.45 -2.2 899,550 - Dshi_0884 0.48 -1.2 899,589 - Dshi_0884 0.52 -1.1 899,757 - Dshi_0884 0.67 -1.1 899,765 - Dshi_0884 0.68 -0.4 899,785 + -1.1 899,815 + Dshi_0884 0.72 -3.9 899,846 - Dshi_0884 0.75 -1.1 899,957 + Dshi_0884 0.86 +0.4 900,076 - -2.7 900,147 + -0.4 900,201 - +1.3 900,224 - Dshi_0885 0.12 -0.8 900,392 - Dshi_0885 0.29 -0.9 900,428 - Dshi_0885 0.33 +0.7 900,501 + Dshi_0885 0.40 +0.6 900,501 + Dshi_0885 0.40 -0.5 900,650 + Dshi_0885 0.56 +1.1 900,772 - Dshi_0885 0.68 -1.7 900,831 + Dshi_0885 0.74 +0.1 900,839 - Dshi_0885 0.75 +0.6 900,875 - Dshi_0885 0.79 +0.4 900,967 - Dshi_0885 0.88 -3.4 901,056 + -0.1
Or see this region's nucleotide sequence