Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0833

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0832 and Dshi_0833 are separated by 464 nucleotidesDshi_0833 and Dshi_0834 are separated by 93 nucleotides Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893 _0832 Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983 _0833 Dshi_0834: Dshi_0834 - protein of unknown function DUF6 transmembrane (RefSeq), at 843,077 to 843,994 _0834 Position (kb) 841 842 843Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 840.434 kb on + strand, within Dshi_0832at 840.594 kb on - strand, within Dshi_0832at 840.688 kb on - strand, within Dshi_0832at 840.854 kb on - strandat 840.878 kb on - strandat 840.893 kb on + strandat 840.895 kb on + strandat 841.015 kb on + strandat 841.043 kb on - strandat 841.043 kb on - strandat 841.153 kb on + strandat 841.161 kb on - strandat 841.319 kb on + strandat 841.342 kb on + strandat 841.413 kb on + strandat 841.498 kb on + strandat 841.578 kb on + strand, within Dshi_0833at 841.583 kb on + strand, within Dshi_0833at 841.591 kb on - strand, within Dshi_0833at 841.609 kb on - strand, within Dshi_0833at 841.757 kb on + strand, within Dshi_0833at 841.934 kb on - strand, within Dshi_0833at 841.934 kb on - strand, within Dshi_0833at 841.983 kb on + strand, within Dshi_0833at 842.041 kb on + strand, within Dshi_0833at 842.170 kb on - strand, within Dshi_0833at 842.187 kb on + strand, within Dshi_0833at 842.382 kb on + strand, within Dshi_0833at 842.390 kb on - strand, within Dshi_0833at 842.390 kb on - strand, within Dshi_0833at 842.390 kb on - strand, within Dshi_0833at 842.409 kb on + strand, within Dshi_0833at 842.883 kb on + strandat 842.888 kb on + strandat 842.888 kb on + strandat 842.992 kb on - strandat 843.051 kb on + strandat 843.121 kb on - strandat 843.191 kb on + strand, within Dshi_0834at 843.240 kb on - strand, within Dshi_0834at 843.591 kb on + strand, within Dshi_0834at 843.668 kb on + strand, within Dshi_0834at 843.687 kb on - strand, within Dshi_0834at 843.827 kb on + strand, within Dshi_0834

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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840,434 + Dshi_0832 0.55 +0.7
840,594 - Dshi_0832 0.71 -2.1
840,688 - Dshi_0832 0.80 -0.4
840,854 - -2.4
840,878 - +1.3
840,893 + -2.8
840,895 + -0.3
841,015 + +1.1
841,043 - -0.6
841,043 - -1.5
841,153 + +1.1
841,161 - +0.6
841,319 + +0.1
841,342 + -1.7
841,413 + +0.8
841,498 + -0.6
841,578 + Dshi_0833 0.14 -1.9
841,583 + Dshi_0833 0.14 -0.1
841,591 - Dshi_0833 0.14 +0.7
841,609 - Dshi_0833 0.15 +1.0
841,757 + Dshi_0833 0.25 -0.4
841,934 - Dshi_0833 0.35 +0.9
841,934 - Dshi_0833 0.35 +0.7
841,983 + Dshi_0833 0.38 +0.9
842,041 + Dshi_0833 0.42 -0.4
842,170 - Dshi_0833 0.50 +0.7
842,187 + Dshi_0833 0.51 -0.6
842,382 + Dshi_0833 0.63 -1.7
842,390 - Dshi_0833 0.63 -2.4
842,390 - Dshi_0833 0.63 -2.7
842,390 - Dshi_0833 0.63 -1.0
842,409 + Dshi_0833 0.65 -2.1
842,883 + +1.6
842,888 + -0.6
842,888 + -0.2
842,992 - -3.2
843,051 + -0.7
843,121 - +1.2
843,191 + Dshi_0834 0.12 -2.1
843,240 - Dshi_0834 0.18 -4.0
843,591 + Dshi_0834 0.56 +1.1
843,668 + Dshi_0834 0.64 -0.1
843,687 - Dshi_0834 0.66 +1.1
843,827 + Dshi_0834 0.82 -0.5

Or see this region's nucleotide sequence