Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0695 and Dshi_0696 overlap by 4 nucleotides Dshi_0696 and Dshi_0697 are separated by 15 nucleotides
Dshi_0695: Dshi_0695 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 701,599 to 702,993
_0695
Dshi_0696: Dshi_0696 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 702,990 to 703,649
_0696
Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675
_0697
Position (kb) 702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.074 kb on - strand, within Dshi_0695 at 702.125 kb on + strand, within Dshi_0695 at 702.133 kb on - strand, within Dshi_0695 at 702.228 kb on - strand, within Dshi_0695 at 702.271 kb on + strand, within Dshi_0695 at 702.351 kb on + strand, within Dshi_0695 at 702.376 kb on + strand, within Dshi_0695 at 702.376 kb on + strand, within Dshi_0695 at 702.391 kb on + strand, within Dshi_0695 at 702.448 kb on - strand, within Dshi_0695 at 702.467 kb on - strand, within Dshi_0695 at 702.484 kb on + strand, within Dshi_0695 at 702.696 kb on + strand, within Dshi_0695 at 702.774 kb on + strand, within Dshi_0695 at 702.799 kb on - strand, within Dshi_0695 at 702.809 kb on - strand, within Dshi_0695 at 702.810 kb on + strand, within Dshi_0695 at 702.830 kb on - strand, within Dshi_0695 at 702.832 kb on + strand, within Dshi_0695 at 702.872 kb on - strand at 702.883 kb on + strand at 702.901 kb on + strand at 703.054 kb on + strand at 703.087 kb on - strand, within Dshi_0696 at 703.106 kb on + strand, within Dshi_0696 at 703.164 kb on + strand, within Dshi_0696 at 703.178 kb on - strand, within Dshi_0696 at 703.254 kb on + strand, within Dshi_0696 at 703.350 kb on + strand, within Dshi_0696 at 703.358 kb on - strand, within Dshi_0696 at 703.377 kb on + strand, within Dshi_0696 at 703.449 kb on + strand, within Dshi_0696 at 703.524 kb on - strand, within Dshi_0696 at 703.583 kb on + strand, within Dshi_0696 at 703.591 kb on - strand at 703.685 kb on - strand at 703.685 kb on - strand at 703.768 kb on + strand, within Dshi_0697 at 703.772 kb on + strand, within Dshi_0697 at 703.775 kb on - strand, within Dshi_0697 at 703.775 kb on - strand, within Dshi_0697 at 703.780 kb on - strand, within Dshi_0697 at 703.786 kb on + strand, within Dshi_0697 at 703.816 kb on - strand, within Dshi_0697 at 703.881 kb on - strand, within Dshi_0697 at 703.883 kb on + strand, within Dshi_0697 at 703.891 kb on - strand, within Dshi_0697 at 703.910 kb on + strand, within Dshi_0697 at 703.975 kb on + strand, within Dshi_0697 at 704.056 kb on - strand, within Dshi_0697 at 704.065 kb on - strand, within Dshi_0697 at 704.087 kb on + strand, within Dshi_0697 at 704.097 kb on - strand, within Dshi_0697 at 704.097 kb on - strand, within Dshi_0697 at 704.097 kb on - strand, within Dshi_0697 at 704.152 kb on + strand, within Dshi_0697 at 704.152 kb on + strand, within Dshi_0697 at 704.152 kb on + strand, within Dshi_0697 at 704.230 kb on + strand, within Dshi_0697 at 704.237 kb on + strand, within Dshi_0697 at 704.237 kb on + strand, within Dshi_0697 at 704.245 kb on - strand, within Dshi_0697 at 704.359 kb on + strand, within Dshi_0697 at 704.370 kb on + strand, within Dshi_0697 at 704.445 kb on + strand, within Dshi_0697 at 704.463 kb on - strand, within Dshi_0697 at 704.464 kb on - strand, within Dshi_0697 at 704.507 kb on - strand, within Dshi_0697 at 704.543 kb on - strand, within Dshi_0697 at 704.549 kb on + strand, within Dshi_0697 at 704.549 kb on - strand, within Dshi_0697 at 704.554 kb on + strand, within Dshi_0697 at 704.555 kb on + strand, within Dshi_0697 at 704.570 kb on + strand, within Dshi_0697 at 704.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 702,074 - Dshi_0695 0.34 +0.7 702,125 + Dshi_0695 0.38 +0.6 702,133 - Dshi_0695 0.38 -0.6 702,228 - Dshi_0695 0.45 +1.7 702,271 + Dshi_0695 0.48 +0.2 702,351 + Dshi_0695 0.54 -0.0 702,376 + Dshi_0695 0.56 +0.2 702,376 + Dshi_0695 0.56 +0.3 702,391 + Dshi_0695 0.57 +0.4 702,448 - Dshi_0695 0.61 -1.0 702,467 - Dshi_0695 0.62 +1.7 702,484 + Dshi_0695 0.63 -0.1 702,696 + Dshi_0695 0.79 +0.3 702,774 + Dshi_0695 0.84 -0.1 702,799 - Dshi_0695 0.86 +2.8 702,809 - Dshi_0695 0.87 -0.5 702,810 + Dshi_0695 0.87 -0.9 702,830 - Dshi_0695 0.88 +0.9 702,832 + Dshi_0695 0.88 +0.7 702,872 - +0.4 702,883 + -0.0 702,901 + -1.0 703,054 + +0.2 703,087 - Dshi_0696 0.15 +0.1 703,106 + Dshi_0696 0.18 -1.6 703,164 + Dshi_0696 0.26 -1.6 703,178 - Dshi_0696 0.28 -0.0 703,254 + Dshi_0696 0.40 +0.1 703,350 + Dshi_0696 0.55 -0.3 703,358 - Dshi_0696 0.56 +0.3 703,377 + Dshi_0696 0.59 -0.0 703,449 + Dshi_0696 0.70 -2.8 703,524 - Dshi_0696 0.81 -1.1 703,583 + Dshi_0696 0.90 -1.3 703,591 - -0.9 703,685 - -0.7 703,685 - -1.0 703,768 + Dshi_0697 0.10 -0.1 703,772 + Dshi_0697 0.11 +2.1 703,775 - Dshi_0697 0.11 +0.3 703,775 - Dshi_0697 0.11 -2.6 703,780 - Dshi_0697 0.11 +1.4 703,786 + Dshi_0697 0.12 -1.3 703,816 - Dshi_0697 0.15 -3.2 703,881 - Dshi_0697 0.21 -0.2 703,883 + Dshi_0697 0.22 +0.4 703,891 - Dshi_0697 0.22 +0.8 703,910 + Dshi_0697 0.24 +0.4 703,975 + Dshi_0697 0.31 -0.3 704,056 - Dshi_0697 0.39 -0.5 704,065 - Dshi_0697 0.40 -0.3 704,087 + Dshi_0697 0.42 -2.3 704,097 - Dshi_0697 0.43 +3.1 704,097 - Dshi_0697 0.43 -0.0 704,097 - Dshi_0697 0.43 +1.2 704,152 + Dshi_0697 0.48 +2.3 704,152 + Dshi_0697 0.48 -0.4 704,152 + Dshi_0697 0.48 +0.9 704,230 + Dshi_0697 0.56 +0.2 704,237 + Dshi_0697 0.57 +0.8 704,237 + Dshi_0697 0.57 +0.5 704,245 - Dshi_0697 0.57 -1.6 704,359 + Dshi_0697 0.69 -1.4 704,370 + Dshi_0697 0.70 -3.0 704,445 + Dshi_0697 0.77 -0.0 704,463 - Dshi_0697 0.79 -1.3 704,464 - Dshi_0697 0.79 -0.6 704,507 - Dshi_0697 0.83 +0.8 704,543 - Dshi_0697 0.87 -0.1 704,549 + Dshi_0697 0.87 +0.3 704,549 - Dshi_0697 0.87 +1.6 704,554 + Dshi_0697 0.88 +1.2 704,555 + Dshi_0697 0.88 -0.0 704,570 + Dshi_0697 0.90 +0.5 704,575 + +0.9
Or see this region's nucleotide sequence