Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0661 and Dshi_0662 are separated by 14 nucleotides Dshi_0662 and Dshi_0663 are separated by 12 nucleotides Dshi_0663 and Dshi_0664 overlap by 4 nucleotides
Dshi_0661: Dshi_0661 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 665,449 to 667,050
_0661
Dshi_0662: Dshi_0662 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 667,065 to 667,790
_0662
Dshi_0663: Dshi_0663 - Cbb3-type cytochrome oxidase component (RefSeq), at 667,803 to 668,036
_0663
Dshi_0664: Dshi_0664 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 668,033 to 668,896
_0664
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 666.827 kb on - strand, within Dshi_0661 at 666.828 kb on + strand, within Dshi_0661 at 666.838 kb on + strand, within Dshi_0661 at 666.846 kb on - strand, within Dshi_0661 at 666.939 kb on - strand at 666.953 kb on - strand at 666.953 kb on - strand at 667.004 kb on + strand at 667.081 kb on + strand at 667.081 kb on + strand at 667.172 kb on + strand, within Dshi_0662 at 667.185 kb on - strand, within Dshi_0662 at 667.248 kb on + strand at 667.255 kb on - strand, within Dshi_0662 at 667.317 kb on - strand, within Dshi_0662 at 667.350 kb on + strand, within Dshi_0662 at 667.407 kb on - strand, within Dshi_0662 at 667.414 kb on - strand, within Dshi_0662 at 667.418 kb on + strand, within Dshi_0662 at 667.576 kb on - strand, within Dshi_0662 at 667.581 kb on - strand, within Dshi_0662 at 667.613 kb on + strand, within Dshi_0662 at 667.690 kb on - strand, within Dshi_0662 at 667.807 kb on - strand at 667.886 kb on + strand, within Dshi_0663 at 667.894 kb on - strand, within Dshi_0663 at 667.988 kb on + strand, within Dshi_0663 at 668.023 kb on - strand at 668.030 kb on + strand at 668.110 kb on - strand at 668.158 kb on - strand, within Dshi_0664 at 668.167 kb on + strand, within Dshi_0664 at 668.277 kb on - strand, within Dshi_0664 at 668.277 kb on - strand, within Dshi_0664 at 668.352 kb on - strand, within Dshi_0664 at 668.378 kb on + strand, within Dshi_0664 at 668.391 kb on + strand, within Dshi_0664 at 668.409 kb on + strand, within Dshi_0664 at 668.409 kb on - strand, within Dshi_0664 at 668.436 kb on + strand, within Dshi_0664 at 668.461 kb on + strand, within Dshi_0664 at 668.461 kb on + strand, within Dshi_0664 at 668.602 kb on - strand, within Dshi_0664 at 668.606 kb on + strand, within Dshi_0664 at 668.699 kb on - strand, within Dshi_0664 at 668.836 kb on + strand at 668.863 kb on + strand at 668.878 kb on - strand at 668.921 kb on + strand at 668.936 kb on + strand at 668.949 kb on + strand at 668.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 666,827 - Dshi_0661 0.86 +1.7 666,828 + Dshi_0661 0.86 +0.9 666,838 + Dshi_0661 0.87 +1.2 666,846 - Dshi_0661 0.87 +1.3 666,939 - +2.2 666,953 - -1.2 666,953 - +2.6 667,004 + +1.3 667,081 + +1.1 667,081 + +2.7 667,172 + Dshi_0662 0.15 +0.7 667,185 - Dshi_0662 0.17 +4.0 667,248 + +0.6 667,255 - Dshi_0662 0.26 -3.3 667,317 - Dshi_0662 0.35 -0.0 667,350 + Dshi_0662 0.39 +1.7 667,407 - Dshi_0662 0.47 -1.0 667,414 - Dshi_0662 0.48 +0.8 667,418 + Dshi_0662 0.49 -1.0 667,576 - Dshi_0662 0.70 -0.4 667,581 - Dshi_0662 0.71 -0.6 667,613 + Dshi_0662 0.75 -1.0 667,690 - Dshi_0662 0.86 +2.3 667,807 - +1.2 667,886 + Dshi_0663 0.35 +0.2 667,894 - Dshi_0663 0.39 -1.6 667,988 + Dshi_0663 0.79 -1.6 668,023 - +0.1 668,030 + +0.6 668,110 - +2.1 668,158 - Dshi_0664 0.14 +1.6 668,167 + Dshi_0664 0.16 +0.6 668,277 - Dshi_0664 0.28 +1.8 668,277 - Dshi_0664 0.28 -1.0 668,352 - Dshi_0664 0.37 +3.3 668,378 + Dshi_0664 0.40 +1.0 668,391 + Dshi_0664 0.41 +1.4 668,409 + Dshi_0664 0.44 +1.1 668,409 - Dshi_0664 0.44 -1.0 668,436 + Dshi_0664 0.47 +0.7 668,461 + Dshi_0664 0.50 +2.8 668,461 + Dshi_0664 0.50 +1.7 668,602 - Dshi_0664 0.66 -0.2 668,606 + Dshi_0664 0.66 +2.6 668,699 - Dshi_0664 0.77 +1.9 668,836 + -0.2 668,863 + +0.6 668,878 - +1.2 668,921 + -1.6 668,936 + -0.2 668,949 + +0.3 668,958 - +0.7
Or see this region's nucleotide sequence