Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0508

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0507 and Dshi_0508 are separated by 183 nucleotidesDshi_0508 and Dshi_0509 are separated by 93 nucleotides Dshi_0507: Dshi_0507 - MRP-like protein (ATP/GTP-binding protein) (RefSeq), at 492,087 to 493,133 _0507 Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531 _0508 Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407 _0509 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 492.335 kb on + strand, within Dshi_0507at 492.399 kb on + strand, within Dshi_0507at 492.480 kb on - strand, within Dshi_0507at 492.602 kb on + strand, within Dshi_0507at 492.610 kb on - strand, within Dshi_0507at 492.675 kb on - strand, within Dshi_0507at 492.776 kb on - strand, within Dshi_0507at 492.777 kb on - strand, within Dshi_0507at 492.820 kb on - strand, within Dshi_0507at 492.950 kb on + strand, within Dshi_0507at 492.985 kb on - strand, within Dshi_0507at 492.998 kb on + strand, within Dshi_0507at 493.021 kb on + strand, within Dshi_0507at 493.043 kb on + strandat 493.066 kb on - strandat 493.215 kb on - strandat 493.243 kb on - strandat 493.335 kb on - strandat 493.359 kb on + strandat 493.418 kb on + strandat 493.597 kb on + strand, within Dshi_0508at 493.615 kb on - strand, within Dshi_0508at 493.720 kb on + strand, within Dshi_0508at 493.787 kb on - strand, within Dshi_0508at 493.800 kb on + strand, within Dshi_0508at 493.831 kb on + strand, within Dshi_0508at 493.893 kb on + strand, within Dshi_0508at 493.901 kb on - strand, within Dshi_0508at 493.965 kb on + strand, within Dshi_0508at 494.022 kb on + strand, within Dshi_0508at 494.058 kb on - strand, within Dshi_0508at 494.067 kb on - strand, within Dshi_0508at 494.103 kb on - strand, within Dshi_0508at 494.197 kb on - strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.236 kb on + strand, within Dshi_0508at 494.266 kb on + strand, within Dshi_0508at 494.280 kb on - strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.302 kb on + strand, within Dshi_0508at 494.310 kb on - strand, within Dshi_0508at 494.370 kb on + strand, within Dshi_0508at 494.378 kb on - strand, within Dshi_0508at 494.425 kb on - strandat 494.436 kb on - strandat 494.458 kb on + strandat 494.468 kb on - strandat 494.559 kb on + strandat 494.559 kb on + strandat 494.577 kb on - strandat 494.623 kb on + strandat 494.655 kb on + strandat 494.697 kb on - strandat 494.742 kb on + strand, within Dshi_0509at 494.793 kb on + strand, within Dshi_0509at 494.866 kb on - strand, within Dshi_0509at 494.926 kb on + strand, within Dshi_0509at 494.948 kb on + strand, within Dshi_0509at 495.121 kb on - strand, within Dshi_0509at 495.131 kb on - strand, within Dshi_0509at 495.154 kb on - strand, within Dshi_0509at 495.156 kb on + strand, within Dshi_0509at 495.166 kb on - strand, within Dshi_0509at 495.203 kb on + strand, within Dshi_0509at 495.211 kb on - strand, within Dshi_0509at 495.213 kb on + strand, within Dshi_0509at 495.216 kb on + strand, within Dshi_0509at 495.218 kb on + strand, within Dshi_0509at 495.309 kb on + strand, within Dshi_0509at 495.391 kb on + strandat 495.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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492,335 + Dshi_0507 0.24 -2.3
492,399 + Dshi_0507 0.30 +1.8
492,480 - Dshi_0507 0.38 -3.2
492,602 + Dshi_0507 0.49 -0.3
492,610 - Dshi_0507 0.50 +0.2
492,675 - Dshi_0507 0.56 -1.0
492,776 - Dshi_0507 0.66 +0.5
492,777 - Dshi_0507 0.66 +0.1
492,820 - Dshi_0507 0.70 +1.7
492,950 + Dshi_0507 0.82 +1.1
492,985 - Dshi_0507 0.86 -3.2
492,998 + Dshi_0507 0.87 -0.4
493,021 + Dshi_0507 0.89 -0.2
493,043 + +0.4
493,066 - +0.1
493,215 - -1.5
493,243 - -3.2
493,335 - -2.8
493,359 + +1.1
493,418 + +2.3
493,597 + Dshi_0508 0.23 +0.4
493,615 - Dshi_0508 0.25 -1.0
493,720 + Dshi_0508 0.33 -3.3
493,787 - Dshi_0508 0.39 -1.4
493,800 + Dshi_0508 0.40 -1.1
493,831 + Dshi_0508 0.42 +0.4
493,893 + Dshi_0508 0.47 -0.1
493,901 - Dshi_0508 0.48 +0.5
493,965 + Dshi_0508 0.53 +0.1
494,022 + Dshi_0508 0.58 -2.8
494,058 - Dshi_0508 0.61 -1.4
494,067 - Dshi_0508 0.62 +1.8
494,103 - Dshi_0508 0.65 +0.2
494,197 - Dshi_0508 0.72 -1.1
494,236 + Dshi_0508 0.76 +2.1
494,236 + Dshi_0508 0.76 +2.6
494,236 + Dshi_0508 0.76 -0.3
494,266 + Dshi_0508 0.78 -1.0
494,280 - Dshi_0508 0.79 -0.6
494,302 + Dshi_0508 0.81 -2.1
494,302 + Dshi_0508 0.81 -1.0
494,310 - Dshi_0508 0.82 -0.0
494,370 + Dshi_0508 0.87 +0.4
494,378 - Dshi_0508 0.87 -0.6
494,425 - -0.9
494,436 - -1.3
494,458 + +1.7
494,468 - +0.1
494,559 + +0.1
494,559 + +0.1
494,577 - -0.9
494,623 + -1.4
494,655 + -2.4
494,697 - -2.1
494,742 + Dshi_0509 0.15 +0.9
494,793 + Dshi_0509 0.21 -0.4
494,866 - Dshi_0509 0.31 +1.2
494,926 + Dshi_0509 0.38 +0.4
494,948 + Dshi_0509 0.41 +0.8
495,121 - Dshi_0509 0.63 +0.6
495,131 - Dshi_0509 0.65 -1.1
495,154 - Dshi_0509 0.68 +3.3
495,156 + Dshi_0509 0.68 +0.6
495,166 - Dshi_0509 0.69 +0.8
495,203 + Dshi_0509 0.74 +1.6
495,211 - Dshi_0509 0.75 -3.0
495,213 + Dshi_0509 0.75 -0.8
495,216 + Dshi_0509 0.75 -0.0
495,218 + Dshi_0509 0.76 -1.0
495,309 + Dshi_0509 0.87 +0.3
495,391 + +1.6
495,526 - -0.5

Or see this region's nucleotide sequence