Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0445

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0443 and Dshi_0444 are separated by 37 nucleotidesDshi_0444 and Dshi_0445 are separated by 33 nucleotidesDshi_0445 and Dshi_0446 are separated by 130 nucleotidesDshi_0446 and Dshi_0447 are separated by 1 nucleotides Dshi_0443: Dshi_0443 - H+transporting two-sector ATPase gamma subunit (RefSeq), at 432,740 to 433,687 _0443 Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012 _0444 Dshi_0445: Dshi_0445 - hypothetical protein (RefSeq), at 434,046 to 434,438 _0445 Dshi_0446: Dshi_0446 - putative signal transduction protein with CBS domains (RefSeq), at 434,569 to 434,979 _0446 Dshi_0447: Dshi_0447 - transcriptional regulator, Crp/Fnr family (RefSeq), at 434,981 to 435,769 _0447 Position (kb) 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 433.113 kb on - strand, within Dshi_0443at 433.193 kb on + strand, within Dshi_0443at 433.331 kb on + strand, within Dshi_0443at 433.368 kb on + strand, within Dshi_0443at 433.384 kb on + strand, within Dshi_0443at 433.476 kb on + strand, within Dshi_0443at 433.522 kb on + strand, within Dshi_0443at 433.558 kb on + strand, within Dshi_0443at 433.600 kb on + strandat 433.625 kb on + strandat 433.652 kb on + strandat 433.673 kb on + strandat 433.673 kb on + strandat 433.681 kb on - strandat 433.769 kb on + strand, within Dshi_0444at 433.784 kb on + strand, within Dshi_0444at 433.784 kb on + strand, within Dshi_0444at 433.807 kb on + strand, within Dshi_0444at 433.831 kb on + strand, within Dshi_0444at 433.902 kb on - strand, within Dshi_0444at 433.917 kb on + strand, within Dshi_0444at 433.918 kb on - strand, within Dshi_0444at 433.952 kb on + strand, within Dshi_0444at 433.960 kb on - strand, within Dshi_0444at 433.989 kb on + strandat 433.990 kb on + strandat 434.011 kb on + strandat 434.024 kb on - strandat 434.030 kb on - strandat 434.058 kb on + strandat 434.117 kb on - strand, within Dshi_0445at 434.150 kb on + strand, within Dshi_0445at 434.159 kb on + strand, within Dshi_0445at 434.167 kb on - strand, within Dshi_0445at 434.182 kb on + strand, within Dshi_0445at 434.205 kb on + strand, within Dshi_0445at 434.213 kb on - strand, within Dshi_0445at 434.217 kb on + strand, within Dshi_0445at 434.217 kb on + strand, within Dshi_0445at 434.264 kb on + strand, within Dshi_0445at 434.270 kb on - strand, within Dshi_0445at 434.291 kb on - strand, within Dshi_0445at 434.301 kb on + strand, within Dshi_0445at 434.322 kb on - strand, within Dshi_0445at 434.327 kb on + strand, within Dshi_0445at 434.376 kb on - strand, within Dshi_0445at 434.418 kb on + strandat 434.447 kb on + strandat 434.447 kb on + strandat 434.447 kb on + strandat 434.454 kb on - strandat 434.454 kb on - strandat 434.455 kb on - strandat 434.455 kb on - strandat 434.455 kb on - strandat 434.457 kb on + strandat 434.474 kb on + strandat 434.496 kb on + strandat 434.524 kb on + strandat 434.533 kb on - strandat 434.553 kb on + strandat 434.594 kb on + strandat 434.598 kb on + strandat 434.599 kb on + strandat 434.625 kb on + strand, within Dshi_0446at 434.644 kb on - strand, within Dshi_0446at 434.683 kb on + strand, within Dshi_0446at 434.727 kb on + strand, within Dshi_0446at 434.763 kb on + strand, within Dshi_0446at 434.780 kb on - strand, within Dshi_0446at 434.840 kb on - strand, within Dshi_0446at 434.887 kb on + strand, within Dshi_0446at 434.945 kb on + strandat 435.025 kb on + strandat 435.067 kb on + strand, within Dshi_0447at 435.082 kb on + strand, within Dshi_0447at 435.139 kb on - strand, within Dshi_0447at 435.251 kb on + strand, within Dshi_0447at 435.259 kb on - strand, within Dshi_0447at 435.278 kb on + strand, within Dshi_0447at 435.301 kb on + strand, within Dshi_0447at 435.301 kb on + strand, within Dshi_0447at 435.301 kb on + strand, within Dshi_0447at 435.309 kb on - strand, within Dshi_0447at 435.309 kb on - strand, within Dshi_0447at 435.424 kb on + strand, within Dshi_0447at 435.427 kb on - strand, within Dshi_0447at 435.427 kb on - strand, within Dshi_0447at 435.427 kb on - strand, within Dshi_0447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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433,113 - Dshi_0443 0.39 -0.8
433,193 + Dshi_0443 0.48 +0.6
433,331 + Dshi_0443 0.62 -1.4
433,368 + Dshi_0443 0.66 -0.8
433,384 + Dshi_0443 0.68 -0.1
433,476 + Dshi_0443 0.78 -0.8
433,522 + Dshi_0443 0.82 -0.6
433,558 + Dshi_0443 0.86 +1.5
433,600 + -1.6
433,625 + +1.3
433,652 + +0.6
433,673 + +0.3
433,673 + -2.6
433,681 - -0.0
433,769 + Dshi_0444 0.15 -2.0
433,784 + Dshi_0444 0.20 +2.8
433,784 + Dshi_0444 0.20 +0.3
433,807 + Dshi_0444 0.28 -0.3
433,831 + Dshi_0444 0.37 +0.6
433,902 - Dshi_0444 0.61 +1.2
433,917 + Dshi_0444 0.67 +0.2
433,918 - Dshi_0444 0.67 +0.1
433,952 + Dshi_0444 0.79 +0.2
433,960 - Dshi_0444 0.82 +0.6
433,989 + -2.3
433,990 + +0.2
434,011 + +0.6
434,024 - -1.9
434,030 - +0.3
434,058 + -1.2
434,117 - Dshi_0445 0.18 -0.9
434,150 + Dshi_0445 0.26 +0.4
434,159 + Dshi_0445 0.29 -0.7
434,167 - Dshi_0445 0.31 +0.1
434,182 + Dshi_0445 0.35 -0.1
434,205 + Dshi_0445 0.40 +0.8
434,213 - Dshi_0445 0.42 +0.3
434,217 + Dshi_0445 0.44 -2.0
434,217 + Dshi_0445 0.44 -3.0
434,264 + Dshi_0445 0.55 +0.4
434,270 - Dshi_0445 0.57 +1.0
434,291 - Dshi_0445 0.62 -0.9
434,301 + Dshi_0445 0.65 -0.8
434,322 - Dshi_0445 0.70 -1.6
434,327 + Dshi_0445 0.72 +0.3
434,376 - Dshi_0445 0.84 -0.1
434,418 + +0.1
434,447 + -0.9
434,447 + +0.9
434,447 + -0.6
434,454 - +0.6
434,454 - -1.3
434,455 - +0.4
434,455 - -0.1
434,455 - +1.0
434,457 + +0.0
434,474 + +0.2
434,496 + -0.4
434,524 + +1.4
434,533 - +0.7
434,553 + -3.7
434,594 + -0.1
434,598 + -2.0
434,599 + -2.0
434,625 + Dshi_0446 0.14 -0.0
434,644 - Dshi_0446 0.18 +0.1
434,683 + Dshi_0446 0.28 -1.6
434,727 + Dshi_0446 0.38 +0.2
434,763 + Dshi_0446 0.47 +0.5
434,780 - Dshi_0446 0.51 -1.3
434,840 - Dshi_0446 0.66 -2.0
434,887 + Dshi_0446 0.77 -0.0
434,945 + +1.9
435,025 + -0.6
435,067 + Dshi_0447 0.11 -1.6
435,082 + Dshi_0447 0.13 -2.0
435,139 - Dshi_0447 0.20 -0.4
435,251 + Dshi_0447 0.34 +0.4
435,259 - Dshi_0447 0.35 -2.0
435,278 + Dshi_0447 0.38 -0.7
435,301 + Dshi_0447 0.41 +1.1
435,301 + Dshi_0447 0.41 +0.6
435,301 + Dshi_0447 0.41 -1.2
435,309 - Dshi_0447 0.42 -0.0
435,309 - Dshi_0447 0.42 +1.1
435,424 + Dshi_0447 0.56 +0.5
435,427 - Dshi_0447 0.57 +0.1
435,427 - Dshi_0447 0.57 +1.9
435,427 - Dshi_0447 0.57 +0.2

Or see this region's nucleotide sequence