Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0251 and Dshi_0252 are separated by 77 nucleotides Dshi_0252 and Dshi_0253 are separated by 55 nucleotides Dshi_0253 and Dshi_0254 are separated by 30 nucleotides Dshi_0254 and Dshi_0255 are separated by 156 nucleotides
Dshi_0251: Dshi_0251 - efflux transporter, RND family, MFP subunit (RefSeq), at 249,241 to 250,392
_0251
Dshi_0252: Dshi_0252 - transcriptional regulator, TetR family (RefSeq), at 250,470 to 251,144
_0252
Dshi_0253: Dshi_0253 - AMP-dependent synthetase and ligase (RefSeq), at 251,200 to 252,759
_0253
Dshi_0254: Dshi_0254 - ribonuclease T2 (RefSeq), at 252,790 to 253,431
_0254
Dshi_0255: Dshi_0255 - protein of unknown function DUF1013 (RefSeq), at 253,588 to 254,340
_0255
Position (kb) 251
252
253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 250.245 kb on - strand, within Dshi_0251 at 250.303 kb on + strand at 250.303 kb on + strand at 250.303 kb on + strand at 250.383 kb on + strand at 250.555 kb on + strand, within Dshi_0252 at 250.612 kb on - strand, within Dshi_0252 at 250.675 kb on + strand, within Dshi_0252 at 250.728 kb on - strand, within Dshi_0252 at 250.801 kb on + strand, within Dshi_0252 at 250.823 kb on - strand, within Dshi_0252 at 251.019 kb on + strand, within Dshi_0252 at 251.146 kb on - strand at 251.185 kb on - strand at 251.227 kb on + strand at 251.244 kb on - strand at 251.273 kb on - strand at 251.351 kb on - strand at 251.375 kb on + strand, within Dshi_0253 at 251.422 kb on + strand, within Dshi_0253 at 251.497 kb on - strand, within Dshi_0253 at 251.601 kb on + strand, within Dshi_0253 at 251.664 kb on + strand, within Dshi_0253 at 251.751 kb on + strand, within Dshi_0253 at 251.751 kb on + strand, within Dshi_0253 at 251.782 kb on - strand, within Dshi_0253 at 251.832 kb on + strand, within Dshi_0253 at 251.832 kb on + strand, within Dshi_0253 at 251.840 kb on - strand, within Dshi_0253 at 251.840 kb on - strand, within Dshi_0253 at 251.899 kb on - strand, within Dshi_0253 at 251.901 kb on + strand, within Dshi_0253 at 251.917 kb on + strand, within Dshi_0253 at 251.925 kb on - strand, within Dshi_0253 at 251.969 kb on - strand, within Dshi_0253 at 252.026 kb on + strand, within Dshi_0253 at 252.051 kb on + strand, within Dshi_0253 at 252.146 kb on + strand, within Dshi_0253 at 252.146 kb on + strand, within Dshi_0253 at 252.208 kb on + strand, within Dshi_0253 at 252.264 kb on - strand, within Dshi_0253 at 252.425 kb on - strand, within Dshi_0253 at 252.444 kb on + strand, within Dshi_0253 at 252.570 kb on - strand, within Dshi_0253 at 252.617 kb on + strand at 252.668 kb on + strand at 252.737 kb on - strand at 252.748 kb on + strand at 252.793 kb on + strand at 252.796 kb on - strand at 252.869 kb on - strand, within Dshi_0254 at 252.878 kb on + strand, within Dshi_0254 at 252.892 kb on + strand, within Dshi_0254 at 252.939 kb on - strand, within Dshi_0254 at 253.305 kb on + strand, within Dshi_0254 at 253.370 kb on - strand at 253.388 kb on - strand at 253.416 kb on - strand at 253.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 250,245 - Dshi_0251 0.87 +0.3 250,303 + -0.4 250,303 + -1.3 250,303 + -3.8 250,383 + +0.2 250,555 + Dshi_0252 0.13 -0.1 250,612 - Dshi_0252 0.21 +0.7 250,675 + Dshi_0252 0.30 +0.5 250,728 - Dshi_0252 0.38 +1.1 250,801 + Dshi_0252 0.49 +1.7 250,823 - Dshi_0252 0.52 +2.2 251,019 + Dshi_0252 0.81 +0.4 251,146 - +0.3 251,185 - -0.9 251,227 + +2.3 251,244 - -3.8 251,273 - +1.3 251,351 - +0.4 251,375 + Dshi_0253 0.11 -0.3 251,422 + Dshi_0253 0.14 -1.0 251,497 - Dshi_0253 0.19 -0.6 251,601 + Dshi_0253 0.26 -2.6 251,664 + Dshi_0253 0.30 -1.3 251,751 + Dshi_0253 0.35 +1.8 251,751 + Dshi_0253 0.35 -1.0 251,782 - Dshi_0253 0.37 -0.4 251,832 + Dshi_0253 0.41 -0.1 251,832 + Dshi_0253 0.41 +0.5 251,840 - Dshi_0253 0.41 -0.5 251,840 - Dshi_0253 0.41 +0.2 251,899 - Dshi_0253 0.45 -3.5 251,901 + Dshi_0253 0.45 +0.2 251,917 + Dshi_0253 0.46 -1.0 251,925 - Dshi_0253 0.46 -0.2 251,969 - Dshi_0253 0.49 +0.1 252,026 + Dshi_0253 0.53 +0.2 252,051 + Dshi_0253 0.55 -0.3 252,146 + Dshi_0253 0.61 -3.0 252,146 + Dshi_0253 0.61 +0.3 252,208 + Dshi_0253 0.65 -0.6 252,264 - Dshi_0253 0.68 -2.2 252,425 - Dshi_0253 0.79 +0.7 252,444 + Dshi_0253 0.80 +1.1 252,570 - Dshi_0253 0.88 +0.5 252,617 + -1.5 252,668 + -2.3 252,737 - -0.8 252,748 + +1.5 252,793 + -0.2 252,796 - +0.9 252,869 - Dshi_0254 0.12 +0.7 252,878 + Dshi_0254 0.14 +0.6 252,892 + Dshi_0254 0.16 -0.8 252,939 - Dshi_0254 0.23 -1.6 253,305 + Dshi_0254 0.80 -0.8 253,370 - +1.6 253,388 - +1.8 253,416 - -0.3 253,419 - -0.0
Or see this region's nucleotide sequence