Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3977

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
5,176,992	+				+1.2
5,177,032	+				+2.2
5,177,045	+		BT3976	0.13	+3.1
5,177,113	+		BT3976	0.30	+1.0
5,177,428	+				-0.9
5,177,429	-				+0.8
5,177,450	-				+1.1
5,177,452	+				+1.1
5,177,460	+				+1.2
5,177,470	+				+0.2
5,177,471	-				+0.8
5,177,507	+				-2.1
5,177,508	-				+1.8
5,177,543	+				-0.5
5,177,544	-				+1.1
5,177,661	-				-1.3
5,177,664	-				+1.1
5,177,707	-				-1.1
5,177,724	+				-0.1
5,177,724	+				+2.3
5,177,724	+				-1.5
5,177,880	-		BT3977	0.14	+0.5
5,177,880	-		BT3977	0.14	-1.1
5,178,074	+		BT3977	0.21	-0.3
5,178,077	+		BT3977	0.21	+0.1
5,178,077	+		BT3977	0.21	+0.1
5,178,099	+		BT3977	0.22	+1.7
5,178,116	+		BT3977	0.23	+0.8
5,178,125	+		BT3977	0.23	+1.1
5,178,212	+		BT3977	0.26	+1.9
5,178,213	-		BT3977	0.26	-0.7
5,178,222	+		BT3977	0.26	+1.7
5,178,222	+		BT3977	0.26	+0.1
5,178,295	+		BT3977	0.29	-0.7
5,178,314	+		BT3977	0.30	+1.3
5,178,368	+		BT3977	0.32	+0.1
5,178,368	+		BT3977	0.32	+1.7
5,178,383	+		BT3977	0.32	+2.4
5,178,454	+		BT3977	0.35	-0.2
5,178,454	+		BT3977	0.35	-0.3
5,178,455	-		BT3977	0.35	+0.6
5,178,455	-		BT3977	0.35	+1.1
5,178,558	-		BT3977	0.38	+1.3
5,178,639	-		BT3977	0.41	+3.1
5,178,642	+		BT3977	0.41	-0.6
5,178,643	-		BT3977	0.41	+0.5
5,178,698	+		BT3977	0.43	+0.7
5,178,698	+		BT3977	0.43	+1.6
5,178,698	+		BT3977	0.43	+0.5
5,178,743	+		BT3977	0.45	+0.6
5,178,761	+		BT3977	0.46	-0.5
5,178,792	-		BT3977	0.47	+0.9
5,178,890	+		BT3977	0.50	-0.9
5,178,891	-		BT3977	0.50	-0.1
5,178,912	-		BT3977	0.51	-2.2
5,178,947	-		BT3977	0.52	+0.6
5,178,958	-		BT3977	0.53	-0.5
5,178,958	-		BT3977	0.53	-0.6
5,178,975	-		BT3977	0.53	+1.1
5,179,042	-		BT3977	0.56	+1.1
5,179,042	-		BT3977	0.56	+1.7
5,179,047	-		BT3977	0.56	+0.8
5,179,049	+		BT3977	0.56	-1.0
5,179,052	+		BT3977	0.56	+0.3
5,179,053	-		BT3977	0.56	+0.5
5,179,057	-		BT3977	0.56	-0.8
5,179,075	-		BT3977	0.57	-0.9
5,179,076	+		BT3977	0.57	+0.4
5,179,076	+		BT3977	0.57	+0.9
5,179,076	+		BT3977	0.57	+0.5
5,179,077	-		BT3977	0.57	+0.6
5,179,079	-		BT3977	0.57	+1.3
5,179,079	-		BT3977	0.57	-1.4
5,179,094	+		BT3977	0.57	-0.8
5,179,094	+		BT3977	0.57	-1.3
5,179,102	+		BT3977	0.58	+0.2
5,179,103	-		BT3977	0.58	+0.1
5,179,126	-		BT3977	0.59	-1.7
5,179,130	+		BT3977	0.59	-0.2
5,179,154	-		BT3977	0.60	+0.5
5,179,179	+		BT3977	0.60	-0.3
5,179,179	+		BT3977	0.60	+1.5
5,179,179	+		BT3977	0.60	+1.1
5,179,179	+		BT3977	0.60	-0.0
5,179,180	-		BT3977	0.60	-0.5
5,179,182	-		BT3977	0.61	-0.3
5,179,217	-		BT3977	0.62	-1.5
5,179,266	-		BT3977	0.64	+0.5
5,179,304	+		BT3977	0.65	+1.2
5,179,304	+		BT3977	0.65	-2.0
5,179,305	-		BT3977	0.65	+0.4
5,179,305	-		BT3977	0.65	+0.1
5,179,313	+		BT3977	0.65	-0.2
5,179,313	+		BT3977	0.65	-0.4
5,179,324	+		BT3977	0.66	+0.1
5,179,324	+		BT3977	0.66	+0.1
5,179,325	-		BT3977	0.66	+0.6
5,179,325	-		BT3977	0.66	+0.4
5,179,325	-		BT3977	0.66	+0.5
5,179,327	+		BT3977	0.66	+1.1
5,179,328	-		BT3977	0.66	+1.1
5,179,355	+		BT3977	0.67	+0.4
5,179,362	-		BT3977	0.67	-1.0
5,179,391	+		BT3977	0.68	+0.9
5,179,391	+		BT3977	0.68	+2.4
5,179,393	+		BT3977	0.68	+0.2
5,179,411	+		BT3977	0.69	-0.5
5,179,412	-		BT3977	0.69	+0.2
5,179,445	+		BT3977	0.70	-0.5
5,179,452	-		BT3977	0.70	-0.4
5,179,468	-		BT3977	0.71	+0.9
5,179,469	+		BT3977	0.71	-1.2
5,179,496	+		BT3977	0.72	+1.1
5,179,515	+		BT3977	0.72	+0.7
5,179,521	-		BT3977	0.73	+0.4
5,179,521	-		BT3977	0.73	-1.4
5,179,521	-		BT3977	0.73	+2.1
5,179,527	-		BT3977	0.73	+1.2
5,179,557	+		BT3977	0.74	-1.8
5,179,558	-		BT3977	0.74	-0.3
5,179,558	-		BT3977	0.74	+0.1
5,179,558	-		BT3977	0.74	+1.1
5,179,558	-		BT3977	0.74	-0.3
5,179,558	-		BT3977	0.74	-1.3
5,179,585	-		BT3977	0.75	-0.3
5,179,640	+		BT3977	0.77	+2.1
5,179,680	-		BT3977	0.78	-0.6
5,179,680	-		BT3977	0.78	+0.3
5,179,706	-		BT3977	0.79	+1.0
5,179,706	-		BT3977	0.79	+0.1
5,179,706	-		BT3977	0.79	-0.1
5,179,713	-		BT3977	0.79	-0.9
5,179,751	-		BT3977	0.81	+0.1
5,179,754	+		BT3977	0.81	-1.3
5,179,755	-		BT3977	0.81	+1.0
5,179,788	-		BT3977	0.82	+0.1
5,179,794	-		BT3977	0.82	-0.0
5,179,797	+		BT3977	0.82	-0.9
5,179,797	+		BT3977	0.82	+0.4
5,179,798	-		BT3977	0.82	+0.6
5,179,817	+		BT3977	0.83	+2.1
5,179,838	+		BT3977	0.84	+0.2
5,179,844	+		BT3977	0.84	+1.0
5,179,899	+		BT3977	0.86	-0.8
5,179,900	-		BT3977	0.86	+0.5
5,179,914	-		BT3977	0.87	-0.7
5,179,958	+		BT3977	0.88	+0.9
5,179,959	-		BT3977	0.88	+1.3
5,180,070	-				-1.2
5,180,074	+				+0.5
5,180,075	-				-0.5
5,180,081	+				+0.5
5,180,081	+				+0.2
5,180,081	+				+0.2
5,180,146	-				+0.4
5,180,148	-				+0.6
5,180,148	-				+1.1
5,180,148	-				+0.4
5,180,155	+				-1.3
5,180,156	-				-0.1
5,180,173	+				+0.1
5,180,174	-				-1.3
5,180,182	+				+2.9
5,180,182	+				-0.5
5,180,192	+				-1.5
5,180,195	+				-0.0
5,180,301	-				-0.9
5,180,417	-				+0.1
5,180,435	-				-0.6
5,180,454	+				-1.7
5,180,454	+				-1.3
5,180,471	-				-0.9
5,180,471	-				-0.3
5,180,574	+				-1.3
5,180,574	+				+1.1
5,180,575	-				-2.3
5,180,609	+		BT3978	0.12	+1.0
5,180,697	-		BT3978	0.18	+2.6
5,180,733	-		BT3978	0.21	-0.5
5,180,762	-		BT3978	0.23	-1.3
5,180,805	-		BT3978	0.26	-0.9
5,180,807	-		BT3978	0.26	-1.9
5,180,818	+		BT3978	0.27	+0.1
5,180,872	+		BT3978	0.30	-0.7
5,180,879	+		BT3978	0.31	-0.7
5,180,880	-		BT3978	0.31	-0.8
5,180,925	+		BT3978	0.34	+0.7
5,180,926	-		BT3978	0.34	-1.5
5,180,994	+		BT3978	0.39	-1.5
5,181,022	+		BT3978	0.41	-2.5
5,181,074	-		BT3978	0.44	-0.9
5,181,128	-		BT3978	0.48	+0.1
5,181,146	-		BT3978	0.49	+2.3
5,181,214	-		BT3978	0.54	+1.4