Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3786

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
4,911,930	-		BT3784	0.66	+0.1
4,912,161	-		BT3784	0.77	+1.1
4,912,165	-		BT3784	0.77	-1.8
4,912,165	-		BT3784	0.77	+0.2
4,912,290	-		BT3784	0.82	-0.9
4,912,402	-		BT3784	0.87	-0.9
4,912,468	+				+1.0
4,912,470	+				-1.5
4,912,587	-				+0.7
4,912,602	+				+1.1
4,913,002	+				+0.5
4,913,002	+				+0.3
4,913,019	+				+0.8
4,913,022	+				+0.6
4,913,161	-				-1.5
4,913,163	+				-0.3
4,913,182	-				-0.1
4,913,200	+				+2.2
4,913,200	+				-1.0
4,913,203	+				-0.4
4,913,206	-				+1.5
4,913,241	+				-0.7
4,913,250	+				+1.4
4,913,305	-				+0.2
4,913,359	-		BT3786	0.11	+2.3
4,913,427	+		BT3786	0.13	+0.2
4,913,428	-		BT3786	0.13	-0.5
4,913,547	+		BT3786	0.16	-2.0
4,913,555	-		BT3786	0.16	+0.7
4,913,573	-		BT3786	0.17	-0.9
4,913,575	+		BT3786	0.17	-0.5
4,913,576	-		BT3786	0.17	+0.0
4,913,590	+		BT3786	0.17	+0.3
4,913,600	-		BT3786	0.17	+0.6
4,913,783	+		BT3786	0.22	-1.2
4,913,913	+		BT3786	0.25	-0.5
4,913,918	-		BT3786	0.25	-2.2
4,913,918	-		BT3786	0.25	-0.6
4,913,931	-		BT3786	0.25	+1.1
4,914,036	+		BT3786	0.28	+1.8
4,914,060	-		BT3786	0.29	-0.9
4,914,090	+		BT3786	0.29	+1.5
4,914,100	+		BT3786	0.30	+0.1
4,914,100	+		BT3786	0.30	-0.7
4,914,163	+		BT3786	0.31	+0.2
4,914,164	-		BT3786	0.31	+0.7
4,914,170	-		BT3786	0.31	-1.5
4,914,230	+		BT3786	0.33	-0.1
4,914,231	-		BT3786	0.33	+1.3
4,914,237	+		BT3786	0.33	-1.2
4,914,237	+		BT3786	0.33	+0.1
4,914,313	-		BT3786	0.35	+1.6
4,914,349	+		BT3786	0.36	+0.0
4,914,391	-		BT3786	0.37	-0.2
4,914,433	-		BT3786	0.38	+1.2
4,914,433	-		BT3786	0.38	-0.5
4,914,446	+		BT3786	0.38	-0.7
4,914,447	-		BT3786	0.38	+0.2
4,914,500	-		BT3786	0.39	+0.1
4,914,507	+		BT3786	0.40	+1.1
4,914,507	+		BT3786	0.40	+0.8
4,914,528	-		BT3786	0.40	-0.7
4,914,532	-		BT3786	0.40	-1.6
4,914,532	-		BT3786	0.40	+0.4
4,914,535	-		BT3786	0.40	+0.7
4,914,589	+		BT3786	0.42	+1.1
4,914,590	-		BT3786	0.42	+0.9
4,914,646	-		BT3786	0.43	+2.0
4,914,735	-		BT3786	0.45	+1.1
4,914,746	-		BT3786	0.46	+0.8
4,914,849	-		BT3786	0.48	+1.1
4,914,883	+		BT3786	0.49	-0.1
4,914,884	-		BT3786	0.49	+2.1
4,914,884	-		BT3786	0.49	+0.8
4,914,915	+				-0.5
4,914,932	-		BT3786	0.50	+0.9
4,914,989	-		BT3786	0.52	+2.0
4,915,054	+		BT3786	0.53	-1.5
4,915,055	-		BT3786	0.53	+0.1
4,915,061	-		BT3786	0.53	-0.6
4,915,095	+		BT3786	0.54	+2.4
4,915,096	-		BT3786	0.54	+1.4
4,915,146	+		BT3786	0.55	-0.3
4,915,146	+		BT3786	0.55	+0.5
4,915,146	+		BT3786	0.55	-0.2
4,915,147	-		BT3786	0.55	+0.4
4,915,147	-		BT3786	0.55	+0.5
4,915,147	-		BT3786	0.55	+2.1
4,915,147	-		BT3786	0.55	+0.6
4,915,163	-		BT3786	0.56	-0.6
4,915,175	+		BT3786	0.56	+2.1
4,915,176	-		BT3786	0.56	-2.0
4,915,199	-		BT3786	0.57	+1.1
4,915,249	+		BT3786	0.58	-1.1
4,915,250	-		BT3786	0.58	-0.1
4,915,266	-		BT3786	0.58	-0.1
4,915,276	-		BT3786	0.59	+0.6
4,915,295	+		BT3786	0.59	-0.5
4,915,296	-		BT3786	0.59	+1.1
4,915,306	-		BT3786	0.59	+1.1
4,915,349	+		BT3786	0.61	+0.9
4,915,405	-		BT3786	0.62	+2.0
4,915,405	-		BT3786	0.62	+1.6
4,915,406	+		BT3786	0.62	-0.6
4,915,407	-		BT3786	0.62	+1.4
4,915,407	-		BT3786	0.62	+3.4
4,915,483	-		BT3786	0.64	-1.8
4,915,659	+		BT3786	0.68	+1.3
4,915,671	+		BT3786	0.68	+0.7
4,915,738	-		BT3786	0.70	-0.5
4,915,744	-		BT3786	0.70	-0.8
4,915,858	-		BT3786	0.73	-0.7
4,915,882	+		BT3786	0.74	+0.1
4,915,978	-		BT3786	0.76	-0.2
4,915,999	-		BT3786	0.77	-0.7
4,916,108	-		BT3786	0.79	+0.2
4,916,368	-		BT3786	0.86	-0.2
4,916,391	+		BT3786	0.86	-0.9
4,916,392	-		BT3786	0.86	+1.9
4,916,397	+		BT3786	0.86	+0.9
4,916,398	-		BT3786	0.86	-0.1
4,916,468	-		BT3786	0.88	+2.3
4,916,470	-		BT3786	0.88	-0.9
4,916,590	-				+1.0
4,916,590	-				-0.7
4,916,601	+				+0.6
4,916,602	-				+0.7
4,916,787	-				-0.4
4,916,834	+				+1.0
4,916,834	+				+0.6
4,917,011	-				-0.0
4,917,078	-				-1.4
4,917,097	-				+0.3
4,917,098	+				-0.5
4,917,099	-				-0.0
4,917,244	+				+0.4
4,917,335	+				-0.0
4,917,336	-				-0.5
4,917,341	-				+1.1
4,917,343	+				+0.5
4,917,344	-				+1.1
4,917,354	-				+1.4
4,917,413	-				+0.1
4,917,505	+				-1.5
4,917,630	-		BT3787	0.12	-1.9
4,917,711	-		BT3787	0.18	-0.6
4,917,725	+		BT3787	0.19	-0.6
4,917,787	-		BT3787	0.24	-0.2
4,917,815	+		BT3787	0.26	+0.7
4,917,867	-		BT3787	0.30	-0.5
4,917,867	-		BT3787	0.30	+1.1
4,917,872	-		BT3787	0.30	+0.4
4,917,872	-		BT3787	0.30	+0.8
4,917,921	+		BT3787	0.34	-0.2
4,917,922	-		BT3787	0.34	+0.4
4,917,922	-		BT3787	0.34	+0.6