Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3777

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
4,900,536	-		BT3775	0.60	-0.4
4,900,536	-		BT3775	0.60	+0.1
4,900,537	-		BT3775	0.60	-1.4
4,900,545	-		BT3775	0.61	-0.4
4,900,554	+		BT3775	0.62	-0.4
4,900,555	-		BT3775	0.63	+0.1
4,900,573	-		BT3775	0.65	+1.1
4,900,574	+		BT3775	0.65	-0.0
4,900,575	-		BT3775	0.65	-0.9
4,900,589	+		BT3775	0.68	-1.9
4,900,608	-		BT3775	0.70	-0.2
4,900,630	-		BT3775	0.74	+0.1
4,900,684	+		BT3775	0.82	+0.7
4,900,691	+		BT3775	0.83	-0.3
4,900,783	+				-0.7
4,900,784	-				+1.2
4,900,862	+				-1.1
4,900,863	-				+0.4
4,900,883	-				+0.4
4,900,972	+		BT3776	0.20	+0.0
4,900,976	+		BT3776	0.21	-1.2
4,900,976	+		BT3776	0.21	-1.7
4,900,976	+		BT3776	0.21	+0.9
4,900,977	-		BT3776	0.21	+1.1
4,900,977	-		BT3776	0.21	+0.6
4,900,977	-		BT3776	0.21	+1.0
4,901,042	+		BT3776	0.30	-0.7
4,901,059	+		BT3776	0.33	+0.4
4,901,060	-		BT3776	0.33	-1.4
4,901,264	+		BT3776	0.62	+0.3
4,901,264	+		BT3776	0.62	-0.6
4,901,265	-		BT3776	0.62	+0.1
4,901,268	+		BT3776	0.63	+0.1
4,901,298	+		BT3776	0.67	-0.6
4,901,299	-		BT3776	0.67	-1.4
4,901,303	+		BT3776	0.68	-0.2
4,901,305	+		BT3776	0.68	-1.0
4,901,321	+				+1.1
4,901,335	-		BT3776	0.72	+0.1
4,901,339	-		BT3776	0.73	-1.3
4,901,343	+		BT3776	0.73	-1.4
4,901,410	+		BT3776	0.83	-1.3
4,901,411	-		BT3776	0.83	+0.1
4,901,412	+		BT3776	0.83	-0.9
4,901,412	+		BT3776	0.83	+0.4
4,901,413	-		BT3776	0.83	-0.4
4,901,413	-		BT3776	0.83	-0.6
4,901,517	-				+1.1
4,901,621	+		BT3777	0.11	+0.6
4,901,622	-		BT3777	0.11	+1.3
4,901,636	+		BT3777	0.12	+0.9
4,901,640	-		BT3777	0.13	+0.6
4,901,689	-		BT3777	0.19	-0.9
4,901,698	-		BT3777	0.20	+0.2
4,901,720	-		BT3777	0.23	-1.7
4,901,727	+		BT3777	0.24	+1.1
4,901,742	+		BT3777	0.26	+1.0
4,901,763	-		BT3777	0.28	+1.7
4,901,912	-		BT3777	0.47	+0.3
4,901,928	+		BT3777	0.49	+0.9
4,901,957	-		BT3777	0.53	-2.2
4,901,968	-		BT3777	0.54	-0.9
4,902,047	+		BT3777	0.64	+1.3
4,902,047	+		BT3777	0.64	+3.1
4,902,065	-		BT3777	0.66	+1.1
4,902,069	+		BT3777	0.67	-0.4
4,902,069	+		BT3777	0.67	+0.2
4,902,099	+		BT3777	0.70	+1.1
4,902,123	+		BT3777	0.73	+0.0
4,902,124	-		BT3777	0.73	+1.7
4,902,141	-		BT3777	0.76	+0.8
4,902,161	+		BT3777	0.78	+1.0
4,902,161	+		BT3777	0.78	-0.9
4,902,208	+		BT3777	0.84	+1.0
4,902,209	-		BT3777	0.84	+0.5
4,902,209	-		BT3777	0.84	+1.3
4,902,209	-		BT3777	0.84	-1.0
4,902,233	-		BT3777	0.87	-0.6
4,902,241	+		BT3777	0.88	+1.2
4,902,251	-		BT3777	0.89	+1.2
4,902,281	+				+0.6
4,902,285	+				+0.2
4,902,286	-				+3.1
4,902,353	+				+0.9
4,902,354	-				+0.1
4,902,363	+				+1.3
4,902,363	+				+0.2
4,902,364	-				-1.3
4,902,422	-				+0.0
4,902,462	+				+0.5
4,902,471	+				+0.3
4,902,476	+				-1.0
4,902,488	+				+1.3
4,902,532	+		BT3778	0.12	+1.1
4,902,545	+		BT3778	0.13	+1.0
4,902,546	-		BT3778	0.13	+1.1
4,902,590	+		BT3778	0.18	+1.1
4,902,590	+		BT3778	0.18	-0.4
4,902,591	-		BT3778	0.18	+0.7
4,902,601	+		BT3778	0.19	-0.0
4,902,604	+		BT3778	0.19	-0.4
4,902,625	+		BT3778	0.22	-0.8
4,902,626	-		BT3778	0.22	-0.2
4,902,626	-		BT3778	0.22	-0.7
4,902,647	+		BT3778	0.24	-0.6
4,902,691	+		BT3778	0.29	-0.7
4,902,705	+		BT3778	0.30	+0.3
4,902,709	+		BT3778	0.31	+1.3
4,902,710	+		BT3778	0.31	+0.6
4,902,735	-		BT3778	0.33	-0.9
4,902,817	-		BT3778	0.42	-0.2
4,902,832	-		BT3778	0.44	-0.4
4,902,832	-		BT3778	0.44	+0.9
4,903,096	+		BT3778	0.72	+2.1
4,903,097	-		BT3778	0.72	-0.5
4,903,159	+		BT3778	0.78	+2.1
4,903,163	+		BT3778	0.79	+1.1
4,903,167	+		BT3778	0.79	+3.1
4,903,168	-		BT3778	0.79	+0.1
4,903,168	-		BT3778	0.79	+0.6
4,903,211	+		BT3778	0.84	-0.1
4,903,216	-		BT3778	0.84	+1.1
4,903,216	-		BT3778	0.84	+0.2
4,903,277	+				+0.7