Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3653

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
4,730,948	+		BT3651	0.89	-1.1
4,730,996	+				-1.5
4,730,997	-				-0.2
4,730,997	-				-1.6
4,730,998	+				-2.9
4,730,998	+				-2.1
4,730,999	-				-0.7
4,730,999	-				+1.2
4,730,999	-				+0.4
4,731,000	+				-2.7
4,731,000	+				-1.6
4,731,000	+				-1.4
4,731,000	+				+1.2
4,731,000	+				-2.9
4,731,001	-				-1.6
4,731,001	-				+2.2
4,731,052	+				-1.2
4,731,076	-				+0.2
4,731,079	+				+0.0
4,731,121	-				-0.9
4,731,142	+				-0.2
4,731,169	+		BT3652	0.11	-0.4
4,731,169	+		BT3652	0.11	-1.0
4,731,170	-		BT3652	0.11	-1.4
4,731,173	-		BT3652	0.12	+0.8
4,731,173	-		BT3652	0.12	-2.1
4,731,231	-		BT3652	0.19	+0.4
4,731,232	+		BT3652	0.19	+1.2
4,731,232	+		BT3652	0.19	+0.3
4,731,247	-		BT3652	0.21	+1.2
4,731,257	+		BT3652	0.22	-0.1
4,731,258	-		BT3652	0.23	-0.3
4,731,310	+		BT3652	0.29	-0.9
4,731,405	-		BT3652	0.41	-1.6
4,731,405	-		BT3652	0.41	+0.2
4,731,422	+		BT3652	0.43	-0.9
4,731,423	-		BT3652	0.43	+0.4
4,731,497	+		BT3652	0.53	-2.4
4,731,539	+		BT3652	0.58	-1.0
4,731,540	-		BT3652	0.58	+1.0
4,731,540	-		BT3652	0.58	-0.8
4,731,540	-		BT3652	0.58	-0.4
4,731,552	+		BT3652	0.60	+1.2
4,731,553	-		BT3652	0.60	+0.3
4,731,557	+		BT3652	0.60	-0.2
4,731,557	+		BT3652	0.60	-0.2
4,731,558	-		BT3652	0.61	-1.2
4,731,558	-		BT3652	0.61	+0.8
4,731,585	+		BT3652	0.64	+0.1
4,731,659	+		BT3652	0.73	-1.2
4,731,659	+		BT3652	0.73	-0.2
4,731,660	-		BT3652	0.74	+0.9
4,731,660	-		BT3652	0.74	-0.8
4,731,752	+		BT3652	0.85	-1.6
4,731,753	-		BT3652	0.85	+0.3
4,731,753	-		BT3652	0.85	-1.3
4,731,753	-		BT3652	0.85	+0.5
4,731,770	-		BT3652	0.87	+0.4
4,731,885	-				+1.9
4,731,902	-				+0.9
4,731,905	+				+0.2
4,731,931	-				-3.6
4,731,948	+				+0.9
4,731,952	-				-0.3
4,732,086	-		BT3653	0.32	+0.4
4,732,120	+		BT3653	0.38	-0.1
4,732,146	-		BT3653	0.42	-1.3
4,732,146	-		BT3653	0.42	-0.5
4,732,148	-		BT3653	0.43	-0.3
4,732,148	-		BT3653	0.43	-1.5
4,732,148	-		BT3653	0.43	+1.2
4,732,149	+		BT3653	0.43	-0.8
4,732,150	-		BT3653	0.43	-0.3
4,732,379	-		BT3653	0.83	-0.9
4,732,424	+				+0.4
4,732,427	+				+0.2
4,732,435	+				-0.3
4,732,489	+				-3.2
4,732,491	+				-0.1
4,732,560	+				+1.4
4,732,561	-				-0.3
4,732,563	+				+0.6
4,732,564	-				+1.2
4,732,565	+				+0.3
4,732,566	-				-0.7
4,732,603	+				-0.4
4,732,735	-				+1.2
4,732,735	-				-1.6
4,732,739	-				-1.7
4,732,739	-				-0.7
4,732,739	-				-1.7
4,732,740	+				+1.2
4,732,745	-				-0.0
4,732,746	+				+1.2
4,732,753	-				-2.7
4,732,759	+				+2.6
4,732,792	+				+0.3
4,732,793	-				-0.6
4,732,795	+				-0.4
4,732,823	+				+0.0
4,732,841	+				+1.2
4,732,871	+				-0.5
4,732,926	-				+0.4
4,732,931	+				+0.8
4,732,959	-				+0.4
4,732,992	-				-1.3
4,732,997	+				-1.6
4,733,004	-		BT3654	0.10	-1.3
4,733,017	+		BT3654	0.11	-1.9
4,733,018	-		BT3654	0.11	-0.2
4,733,103	+		BT3654	0.14	-2.7
4,733,103	+		BT3654	0.14	-1.5
4,733,103	+		BT3654	0.14	+0.6
4,733,103	+		BT3654	0.14	+0.4
4,733,104	-		BT3654	0.14	+0.6
4,733,127	+		BT3654	0.15	-1.3
4,733,128	-		BT3654	0.15	+0.0
4,733,214	+		BT3654	0.19	-1.3
4,733,215	-		BT3654	0.19	-0.1
4,733,216	+		BT3654	0.19	+0.4
4,733,275	+		BT3654	0.22	-0.6
4,733,292	-		BT3654	0.22	-1.1
4,733,292	-		BT3654	0.22	-1.6