Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3293

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
4,213,933	+		BT3292	0.60	-1.0
4,213,966	-		BT3292	0.62	-0.7
4,213,966	-		BT3292	0.62	-1.4
4,214,022	-		BT3292	0.65	-1.7
4,214,029	+		BT3292	0.65	+0.4
4,214,079	-		BT3292	0.68	-0.7
4,214,176	-		BT3292	0.74	-0.3
4,214,176	-		BT3292	0.74	+0.2
4,214,219	+		BT3292	0.76	-0.7
4,214,219	+		BT3292	0.76	+1.3
4,214,223	+		BT3292	0.76	+1.7
4,214,223	+		BT3292	0.76	-0.9
4,214,224	-		BT3292	0.76	-1.1
4,214,224	-		BT3292	0.76	-0.6
4,214,227	-		BT3292	0.76	+0.4
4,214,274	+		BT3292	0.79	-0.9
4,214,275	-		BT3292	0.79	-1.6
4,214,279	-		BT3292	0.79	-0.3
4,214,279	-		BT3292	0.79	-0.3
4,214,279	-		BT3292	0.79	-0.5
4,214,279	-		BT3292	0.79	+0.2
4,214,290	-		BT3292	0.80	+2.3
4,214,294	-		BT3292	0.80	-1.4
4,214,436	-		BT3292	0.88	-1.6
4,214,436	-		BT3292	0.88	+0.2
4,214,467	-		BT3292	0.90	+0.6
4,214,614	-				+1.3
4,214,623	-				-1.1
4,214,626	-				+0.7
4,214,626	-				-1.5
4,214,694	-				-1.3
4,214,694	-				-1.0
4,214,742	-				+0.5
4,214,780	-				-0.1
4,214,800	-				+0.3
4,214,814	-				+1.3
4,214,830	-				-0.3
4,214,876	-				+0.3
4,214,965	+				-0.1
4,214,971	+				-0.3
4,215,054	-				-1.0
4,215,092	+				+0.3
4,215,093	-				-1.3
4,215,130	+				-4.3
4,215,183	-				+1.3
4,215,215	+				-1.0
4,215,216	-				-0.6
4,215,241	+				+0.3
4,215,242	-				+0.7
4,215,250	+				-0.4
4,215,250	+				-0.6
4,215,282	+				-2.1
4,215,298	-				+1.8
4,215,298	-				+1.4
4,215,338	+				+0.3
4,215,363	-				+1.3
4,215,368	+		BT3293	0.11	-0.1
4,215,386	+		BT3293	0.11	+0.7
4,215,417	-		BT3293	0.12	-1.0
4,215,417	-		BT3293	0.12	-1.7
4,215,417	-		BT3293	0.12	-0.7
4,215,528	+		BT3293	0.14	-0.5
4,215,559	-		BT3293	0.15	-1.8
4,215,605	+		BT3293	0.16	+0.4
4,215,615	-		BT3293	0.16	+0.2
4,215,653	+		BT3293	0.17	-0.9
4,215,655	+		BT3293	0.17	-1.6
4,215,667	+		BT3293	0.18	-1.3
4,215,668	-		BT3293	0.18	-0.3
4,215,668	-		BT3293	0.18	+1.3
4,215,763	+		BT3293	0.20	-2.4
4,215,764	-		BT3293	0.20	-0.3
4,215,767	+		BT3293	0.20	+2.3
4,215,768	-		BT3293	0.20	+0.0
4,215,768	-		BT3293	0.20	-0.2
4,215,789	-		BT3293	0.21	-2.1
4,215,840	+		BT3293	0.22	+2.3
4,215,857	-		BT3293	0.22	-1.4
4,215,971	+		BT3293	0.25	-0.5
4,216,097	+		BT3293	0.28	-0.3
4,216,097	+		BT3293	0.28	-2.4
4,216,106	+		BT3293	0.28	+2.3
4,216,107	-		BT3293	0.28	-0.1
4,216,107	-		BT3293	0.28	-0.9
4,216,162	+		BT3293	0.29	-0.7
4,216,162	+		BT3293	0.29	-0.6
4,216,163	-		BT3293	0.29	-1.1
4,216,182	-		BT3293	0.30	+1.6
4,216,185	-		BT3293	0.30	+0.2
4,216,192	-		BT3293	0.30	+0.5
4,216,204	+		BT3293	0.30	-0.6
4,216,216	-		BT3293	0.31	+0.5
4,216,216	-		BT3293	0.31	-0.2
4,216,216	-		BT3293	0.31	-1.3
4,216,220	+		BT3293	0.31	-0.5
4,216,222	+		BT3293	0.31	+0.3
4,216,224	+		BT3293	0.31	-0.3
4,216,224	+		BT3293	0.31	+0.5
4,216,224	+		BT3293	0.31	-0.3
4,216,225	-		BT3293	0.31	-0.3
4,216,247	-		BT3293	0.31	-0.2
4,216,351	+		BT3293	0.34	-1.1
4,216,392	-		BT3293	0.35	+0.3
4,216,397	+		BT3293	0.35	-0.7
4,216,397	+		BT3293	0.35	-3.8
4,216,449	+		BT3293	0.36	-2.5
4,216,461	-		BT3293	0.36	-0.9
4,216,467	+		BT3293	0.36	+1.3
4,216,487	+		BT3293	0.37	-0.1
4,216,487	+		BT3293	0.37	+0.8
4,216,488	-		BT3293	0.37	-0.4
4,216,488	-		BT3293	0.37	-1.9
4,216,585	-		BT3293	0.39	-0.8
4,216,639	-		BT3293	0.40	+0.5
4,216,670	+		BT3293	0.41	-1.0
4,216,685	-		BT3293	0.42	+0.0
4,216,694	+		BT3293	0.42	+1.0
4,216,695	-		BT3293	0.42	-0.7
4,216,698	-		BT3293	0.42	+0.2
4,216,728	+		BT3293	0.43	-1.1
4,216,728	+		BT3293	0.43	+0.3
4,216,729	-		BT3293	0.43	+0.7
4,216,730	+		BT3293	0.43	+0.0
4,216,730	+		BT3293	0.43	-0.7
4,216,730	+		BT3293	0.43	-1.5
4,216,731	-		BT3293	0.43	+0.5
4,216,757	+		BT3293	0.43	-1.0
4,216,808	+		BT3293	0.44	+1.2
4,216,809	-		BT3293	0.44	-2.4
4,216,827	+		BT3293	0.45	+0.8
4,216,828	-		BT3293	0.45	+1.3
4,216,884	+		BT3293	0.46	+0.5
4,216,884	+		BT3293	0.46	+0.3
4,216,886	+		BT3293	0.46	+1.9
4,216,899	-		BT3293	0.47	-0.3
4,216,927	+		BT3293	0.47	+0.3
4,216,927	+		BT3293	0.47	+0.4
4,216,927	+		BT3293	0.47	-2.5
4,216,928	-		BT3293	0.47	+0.6
4,216,929	+		BT3293	0.47	-0.4
4,216,938	+		BT3293	0.47	+0.2
4,216,967	-		BT3293	0.48	-1.2
4,217,013	-		BT3293	0.49	-1.1
4,217,021	+		BT3293	0.49	-1.1
4,217,021	+		BT3293	0.49	-0.7
4,217,021	+		BT3293	0.49	+0.1
4,217,025	-		BT3293	0.50	+0.2
4,217,064	+		BT3293	0.50	+0.3
4,217,065	-		BT3293	0.50	-0.9
4,217,068	+		BT3293	0.51	+3.9
4,217,069	+		BT3293	0.51	-1.4
4,217,069	+		BT3293	0.51	-2.8
4,217,122	-		BT3293	0.52	-1.2
4,217,129	-		BT3293	0.52	+0.8
4,217,171	-		BT3293	0.53	+0.7
4,217,189	+		BT3293	0.53	-0.5
4,217,190	-		BT3293	0.53	-1.3
4,217,221	-		BT3293	0.54	-1.1
4,217,227	+		BT3293	0.54	+1.3
4,217,284	-		BT3293	0.56	-2.0
4,217,291	-		BT3293	0.56	+0.1
4,217,357	+		BT3293	0.57	-1.1
4,217,357	+		BT3293	0.57	+0.6
4,217,358	-		BT3293	0.57	-0.1
4,217,441	+		BT3293	0.59	-1.9
4,217,450	-		BT3293	0.59	-2.1
4,217,462	-		BT3293	0.60	-2.1
4,217,462	-		BT3293	0.60	-0.1
4,217,470	+		BT3293	0.60	-1.5
4,217,471	-		BT3293	0.60	+0.8
4,217,504	+		BT3293	0.61	+0.7
4,217,504	+		BT3293	0.61	-2.3
4,217,514	+		BT3293	0.61	-0.1
4,217,515	-		BT3293	0.61	+0.3
4,217,516	+		BT3293	0.61	-0.3
4,217,517	-		BT3293	0.61	-1.7
4,217,537	+		BT3293	0.62	+0.7
4,217,555	+		BT3293	0.62	+1.6
4,217,558	+		BT3293	0.62	-2.7
4,217,641	-		BT3293	0.64	-0.2
4,217,689	-		BT3293	0.65	+1.3
4,217,692	+		BT3293	0.65	-0.1
4,217,700	+		BT3293	0.65	+0.3
4,217,710	+		BT3293	0.66	+0.2
4,217,711	-		BT3293	0.66	-3.5
4,217,713	+		BT3293	0.66	-1.0
4,217,733	+		BT3293	0.66	-1.6
4,217,734	-		BT3293	0.66	-0.6
4,217,803	+		BT3293	0.68	+1.0
4,217,803	+		BT3293	0.68	-0.3
4,217,892	-		BT3293	0.70	+0.7
4,217,903	+		BT3293	0.70	-0.1
4,217,908	-		BT3293	0.70	+1.3
4,217,908	-		BT3293	0.70	-0.7
4,217,908	-		BT3293	0.70	-0.8
4,217,908	-		BT3293	0.70	+1.9
4,218,004	-		BT3293	0.72	+1.5
4,218,024	-		BT3293	0.73	-0.1
4,218,044	-		BT3293	0.73	-0.1
4,218,046	+		BT3293	0.73	+1.3
4,218,083	-		BT3293	0.74	-0.3
4,218,110	-		BT3293	0.75	-0.9
4,218,113	+		BT3293	0.75	+0.8
4,218,113	+		BT3293	0.75	-1.1
4,218,128	-		BT3293	0.75	-0.4
4,218,138	-		BT3293	0.76	+0.0
4,218,148	-		BT3293	0.76	-0.9
4,218,165	-		BT3293	0.76	-0.7
4,218,219	+		BT3293	0.77	-0.7
4,218,220	-		BT3293	0.78	-0.7
4,218,221	+		BT3293	0.78	-0.3
4,218,221	+		BT3293	0.78	-0.2
4,218,221	+		BT3293	0.78	-0.2
4,218,264	+		BT3293	0.79	-0.1
4,218,265	-		BT3293	0.79	-0.7
4,218,265	-		BT3293	0.79	-2.1
4,218,284	-		BT3293	0.79	+0.3
4,218,322	-		BT3293	0.80	-0.8
4,218,322	-		BT3293	0.80	+0.3
4,218,322	-		BT3293	0.80	+0.8
4,218,357	-		BT3293	0.81	-2.7
4,218,360	-		BT3293	0.81	+0.4
4,218,410	+		BT3293	0.82	-0.1
4,218,410	+		BT3293	0.82	-1.1
4,218,411	-		BT3293	0.82	-0.4
4,218,413	+		BT3293	0.82	+0.4
4,218,413	+		BT3293	0.82	+1.3
4,218,413	+		BT3293	0.82	-1.1
4,218,464	-		BT3293	0.83	+0.3
4,218,466	+		BT3293	0.83	+0.3
4,218,466	+		BT3293	0.83	+1.3
4,218,473	+		BT3293	0.83	-1.3
4,218,473	+		BT3293	0.83	+0.0
4,218,474	-		BT3293	0.83	-0.1
4,218,498	-		BT3293	0.84	+1.1
4,218,504	-		BT3293	0.84	+0.3
4,218,504	-		BT3293	0.84	+0.9
4,218,537	-		BT3293	0.85	-0.5
4,218,556	-		BT3293	0.85	+1.6
4,218,593	+		BT3293	0.86	-0.1
4,218,631	+		BT3293	0.87	-2.1
4,218,721	+		BT3293	0.89	-2.5
4,218,778	+				+0.6
4,218,779	-				-0.1
4,218,779	-				-1.1
4,218,780	+				+1.3
4,218,807	-				-0.2
4,218,834	-				+1.7
4,218,837	-				+0.6
4,218,853	+				-2.3
4,218,892	+				+0.3
4,218,892	+				-1.1
4,218,893	-				-0.1
4,218,893	-				+0.3
4,218,923	-				-0.8
4,218,933	-				-0.6
4,218,933	-				+0.9
4,218,978	+				-0.9
4,218,987	+				-1.2
4,218,987	+				-1.3
4,219,057	+				-0.7
4,219,082	+				-0.6
4,219,083	-				-0.1
4,219,092	+				-1.9
4,219,156	+				-0.6
4,219,177	-				+0.3
4,219,188	+				+1.3
4,219,258	-				-0.3
4,219,258	-				+2.5
4,219,258	-				-0.7
4,219,276	+				-0.9
4,219,276	+				+0.2
4,219,276	+				-0.1
4,219,276	+				-0.3
4,219,277	-				+0.7
4,219,396	-				-2.6
4,219,417	-				-1.3
4,219,424	-				-1.9
4,219,503	-		BT3294	0.11	-1.2
4,219,537	-		BT3294	0.13	-0.7
4,219,540	+		BT3294	0.13	-0.2
4,219,540	+		BT3294	0.13	+0.1
4,219,541	-		BT3294	0.13	-0.1
4,219,541	-		BT3294	0.13	+0.0
4,219,584	+		BT3294	0.16	+2.3
4,219,590	+		BT3294	0.16	-1.3
4,219,627	+		BT3294	0.18	-1.0
4,219,631	-		BT3294	0.18	-0.1
4,219,633	-		BT3294	0.18	-0.3
4,219,633	-		BT3294	0.18	-1.2
4,219,633	-		BT3294	0.18	+0.5
4,219,683	+		BT3294	0.21	+0.0
4,219,713	-		BT3294	0.22	+1.7
4,219,713	-				+1.3
4,219,766	+		BT3294	0.25	-0.9
4,219,819	+		BT3294	0.28	-0.3
4,219,820	-		BT3294	0.28	-0.3
4,219,877	-		BT3294	0.31	-1.9
4,219,944	+		BT3294	0.34	-1.1
4,219,981	+		BT3294	0.36	+2.3
4,219,981	+		BT3294	0.36	+0.1
4,219,984	+		BT3294	0.36	-2.5
4,219,984	+		BT3294	0.36	+0.5
4,220,003	-		BT3294	0.37	-0.5
4,220,158	-		BT3294	0.45	+0.1
4,220,177	-		BT3294	0.46	-3.2
4,220,177	-		BT3294	0.46	-0.1