Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3292

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
4,211,907	-		BT3291	0.61	+1.1
4,211,952	-		BT3291	0.63	-1.3
4,211,995	+		BT3291	0.65	+2.0
4,212,003	+		BT3291	0.65	-0.6
4,212,004	-		BT3291	0.65	-1.4
4,212,064	-		BT3291	0.68	-0.1
4,212,120	+		BT3291	0.70	-0.7
4,212,121	-		BT3291	0.70	+0.6
4,212,121	-		BT3291	0.70	-3.4
4,212,121	-		BT3291	0.70	-1.0
4,212,121	-		BT3291	0.70	+0.9
4,212,209	-		BT3291	0.74	+0.3
4,212,223	-		BT3291	0.75	+1.3
4,212,225	-		BT3291	0.75	-1.2
4,212,292	-		BT3291	0.78	+1.1
4,212,297	+		BT3291	0.78	+0.8
4,212,302	-		BT3291	0.79	-0.2
4,212,318	+		BT3291	0.79	-0.9
4,212,370	+		BT3291	0.82	-0.3
4,212,371	-		BT3291	0.82	-0.7
4,212,371	-		BT3291	0.82	-0.2
4,212,416	+		BT3291	0.84	+0.9
4,212,463	-		BT3291	0.86	+1.3
4,212,510	-		BT3291	0.88	-0.2
4,212,594	-				-1.2
4,212,714	+				-0.7
4,212,715	-				+0.2
4,212,715	-				-1.8
4,212,732	+				-0.3
4,212,733	-				-1.3
4,212,733	-				-1.9
4,212,793	-				-0.3
4,212,850	-				+0.6
4,212,855	-				+0.7
4,212,909	-				-0.0
4,212,950	-				+0.7
4,212,960	-				-1.1
4,212,996	-				+0.3
4,212,998	-				-0.7
4,213,132	-		BT3292	0.15	-0.8
4,213,235	-		BT3292	0.21	-0.1
4,213,235	-		BT3292	0.21	-0.8
4,213,235	-		BT3292	0.21	-0.1
4,213,235	-		BT3292	0.21	-2.0
4,213,239	-		BT3292	0.21	-1.5
4,213,253	+		BT3292	0.22	-1.4
4,213,254	-		BT3292	0.22	+1.8
4,213,254	-		BT3292	0.22	+1.9
4,213,283	+		BT3292	0.23	-0.7
4,213,319	-		BT3292	0.25	-0.6
4,213,389	-		BT3292	0.29	-1.7
4,213,389	-		BT3292	0.29	-1.4
4,213,409	+		BT3292	0.30	-1.0
4,213,410	-		BT3292	0.30	-0.3
4,213,502	+		BT3292	0.36	-1.3
4,213,503	-		BT3292	0.36	+3.9
4,213,523	+		BT3292	0.37	+0.7
4,213,524	-		BT3292	0.37	+0.3
4,213,535	+		BT3292	0.37	-0.5
4,213,535	+		BT3292	0.37	+0.4
4,213,535	+		BT3292	0.37	-0.8
4,213,615	-		BT3292	0.42	-1.5
4,213,670	-		BT3292	0.45	-0.5
4,213,703	-		BT3292	0.47	+0.4
4,213,738	-		BT3292	0.49	-0.3
4,213,738	-		BT3292	0.49	-1.2
4,213,755	-		BT3292	0.50	-1.1
4,213,758	+		BT3292	0.50	-1.1
4,213,759	-		BT3292	0.50	-1.0
4,213,759	-		BT3292	0.50	-0.1
4,213,811	-		BT3292	0.53	-0.5
4,213,811	-		BT3292	0.53	-0.1
4,213,823	-		BT3292	0.54	-1.5
4,213,857	-		BT3292	0.56	-0.3
4,213,857	-		BT3292	0.56	-1.1
4,213,863	+		BT3292	0.56	+0.5
4,213,933	+		BT3292	0.60	-1.0
4,213,966	-		BT3292	0.62	-0.7
4,213,966	-		BT3292	0.62	-1.4
4,214,022	-		BT3292	0.65	-1.7
4,214,029	+		BT3292	0.65	+0.4
4,214,079	-		BT3292	0.68	-0.7
4,214,176	-		BT3292	0.74	-0.3
4,214,176	-		BT3292	0.74	+0.2
4,214,219	+		BT3292	0.76	-0.7
4,214,219	+		BT3292	0.76	+1.3
4,214,223	+		BT3292	0.76	+1.7
4,214,223	+		BT3292	0.76	-0.9
4,214,224	-		BT3292	0.76	-1.1
4,214,224	-		BT3292	0.76	-0.6
4,214,227	-		BT3292	0.76	+0.4
4,214,274	+		BT3292	0.79	-0.9
4,214,275	-		BT3292	0.79	-1.6
4,214,279	-		BT3292	0.79	-0.3
4,214,279	-		BT3292	0.79	-0.3
4,214,279	-		BT3292	0.79	-0.5
4,214,279	-		BT3292	0.79	+0.2
4,214,290	-		BT3292	0.80	+2.3
4,214,294	-		BT3292	0.80	-1.4
4,214,436	-		BT3292	0.88	-1.6
4,214,436	-		BT3292	0.88	+0.2
4,214,467	-		BT3292	0.90	+0.6
4,214,614	-				+1.3
4,214,623	-				-1.1
4,214,626	-				+0.7
4,214,626	-				-1.5
4,214,694	-				-1.3
4,214,694	-				-1.0
4,214,742	-				+0.5
4,214,780	-				-0.1
4,214,800	-				+0.3
4,214,814	-				+1.3
4,214,830	-				-0.3
4,214,876	-				+0.3
4,214,965	+				-0.1
4,214,971	+				-0.3
4,215,054	-				-1.0
4,215,092	+				+0.3
4,215,093	-				-1.3
4,215,130	+				-4.3
4,215,183	-				+1.3
4,215,215	+				-1.0
4,215,216	-				-0.6
4,215,241	+				+0.3
4,215,242	-				+0.7
4,215,250	+				-0.4
4,215,250	+				-0.6
4,215,282	+				-2.1
4,215,298	-				+1.8
4,215,298	-				+1.4
4,215,338	+				+0.3
4,215,363	-				+1.3
4,215,368	+		BT3293	0.11	-0.1
4,215,386	+		BT3293	0.11	+0.7
4,215,417	-		BT3293	0.12	-1.0
4,215,417	-		BT3293	0.12	-1.7
4,215,417	-		BT3293	0.12	-0.7
4,215,528	+		BT3293	0.14	-0.5
4,215,559	-		BT3293	0.15	-1.8
4,215,605	+		BT3293	0.16	+0.4
4,215,615	-		BT3293	0.16	+0.2