Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0107
Experiment: MoLS4 with L-Serine (N), without W
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 with L-Serine (N), without W |
---|---|---|---|---|---|
remove | |||||
138,775 | - | glnQ | DVU0105 | 0.81 | -0.9 |
138,790 | + | glnQ | DVU0105 | 0.84 | -0.4 |
138,798 | - | glnQ | DVU0105 | 0.85 | -0.9 |
138,875 | - | -1.2 | |||
139,039 | + | -1.1 | |||
139,049 | - | -0.6 | |||
139,188 | - | glnP | DVU0106 | 0.30 | -0.4 |
139,226 | + | glnP | DVU0106 | 0.36 | -1.1 |
139,231 | + | glnP | DVU0106 | 0.37 | +1.0 |
139,252 | + | glnP | DVU0106 | 0.40 | -1.8 |
139,252 | + | glnP | DVU0106 | 0.40 | -0.5 |
139,252 | + | glnP | DVU0106 | 0.40 | +0.6 |
139,252 | + | glnP | DVU0106 | 0.40 | -0.7 |
139,260 | - | glnP | DVU0106 | 0.41 | -0.6 |
139,260 | - | glnP | DVU0106 | 0.41 | -1.1 |
139,260 | - | glnP | DVU0106 | 0.41 | -2.8 |
139,285 | + | glnP | DVU0106 | 0.45 | -0.7 |
139,285 | + | glnP | DVU0106 | 0.45 | -0.1 |
139,293 | - | glnP | DVU0106 | 0.46 | -1.2 |
139,293 | - | glnP | DVU0106 | 0.46 | -1.1 |
139,295 | + | glnP | DVU0106 | 0.46 | -2.0 |
139,405 | - | glnP | DVU0106 | 0.63 | -0.2 |
139,532 | + | glnP | DVU0106 | 0.82 | -0.6 |
139,532 | + | glnP | DVU0106 | 0.82 | +0.4 |
139,573 | - | glnP | DVU0106 | 0.88 | -1.1 |
139,693 | - | +1.0 | |||
139,742 | + | -0.4 | |||
139,831 | + | -0.1 | |||
139,831 | + | -1.3 | |||
139,831 | + | -1.1 | |||
139,839 | - | -1.1 | |||
139,849 | - | glnH | DVU0107 | 0.11 | -0.7 |
139,897 | + | glnH | DVU0107 | 0.17 | -0.8 |
139,905 | - | glnH | DVU0107 | 0.18 | -0.3 |
139,905 | - | glnH | DVU0107 | 0.18 | -1.6 |
139,930 | + | glnH | DVU0107 | 0.21 | -1.0 |
139,930 | + | glnH | DVU0107 | 0.21 | +0.4 |
139,930 | + | glnH | DVU0107 | 0.21 | -0.9 |
139,936 | + | glnH | DVU0107 | 0.22 | -1.1 |
139,937 | - | glnH | DVU0107 | 0.22 | -1.3 |
139,938 | - | glnH | DVU0107 | 0.22 | -0.3 |
139,947 | + | glnH | DVU0107 | 0.24 | -0.7 |
139,967 | + | glnH | DVU0107 | 0.26 | -1.0 |
140,011 | + | glnH | DVU0107 | 0.32 | -1.4 |
140,044 | + | glnH | DVU0107 | 0.37 | -0.7 |
140,136 | + | glnH | DVU0107 | 0.49 | -1.7 |
140,144 | - | glnH | DVU0107 | 0.50 | -1.2 |
140,146 | + | glnH | DVU0107 | 0.50 | -0.9 |
140,154 | - | glnH | DVU0107 | 0.51 | -1.0 |
140,176 | + | glnH | DVU0107 | 0.54 | -1.1 |
140,336 | - | glnH | DVU0107 | 0.75 | -1.3 |
140,343 | - | glnH | DVU0107 | 0.76 | -0.5 |
140,399 | - | glnH | DVU0107 | 0.84 | -0.1 |
140,465 | - | -1.1 | |||
140,501 | - | -1.2 | |||
140,543 | + | -1.3 | |||
140,564 | - | -0.7 | |||
140,658 | + | +0.3 | |||
140,666 | + | +0.1 | |||
140,668 | + | -0.4 | |||
140,757 | + | -0.9 | |||
140,757 | + | -0.3 | |||
140,788 | + | -0.4 | |||
140,808 | - | -0.6 | |||
140,818 | - | -0.7 | |||
140,898 | - | DVU0108 | 0.81 | -0.5 | |
140,898 | - | DVU0108 | 0.81 | -0.5 | |
140,927 | - | -0.8 | |||
141,065 | + | -0.7 | |||
141,155 | + | -0.1 | |||
141,163 | - | +0.5 | |||
141,199 | - | -0.4 | |||
141,215 | + | -0.1 | |||
141,239 | + | -0.2 | |||
141,247 | - | -1.5 | |||
141,284 | + | -0.4 | |||
141,302 | - | -0.5 | |||
141,302 | - | -0.4 | |||
141,355 | - | +0.3 | |||
141,369 | - | -0.4 | |||
141,373 | + | -0.0 |
Or see this region's nucleotide sequence