Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2414

Experiment: MoLS4 with L-Serine (N), without W

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2413 and DVU2414 are separated by 194 nucleotidesDVU2414 and DVU2415 are separated by 352 nucleotides DVU2413: DVU2413 - radical SAM domain protein (TIGR), at 2,518,594 to 2,520,636 DVU2413 DVU2414: DVU2414 - hypothetical protein (TIGR), at 2,520,831 to 2,522,591 DVU2414 DVU2415: DVU2415 - hypothetical protein (TIGR), at 2,522,944 to 2,524,371 DVU2415 Position (kb) 2520 2521 2522 2523Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2519.855 kb on + strand, within DVU2413at 2519.961 kb on + strand, within DVU2413at 2519.961 kb on + strand, within DVU2413at 2519.969 kb on - strand, within DVU2413at 2519.969 kb on - strand, within DVU2413at 2519.969 kb on - strand, within DVU2413at 2519.977 kb on + strand, within DVU2413at 2520.058 kb on + strand, within DVU2413at 2520.154 kb on - strand, within DVU2413at 2520.166 kb on - strand, within DVU2413at 2520.166 kb on - strand, within DVU2413at 2520.166 kb on - strand, within DVU2413at 2520.179 kb on - strand, within DVU2413at 2520.179 kb on - strand, within DVU2413at 2520.203 kb on + strand, within DVU2413at 2520.222 kb on + strand, within DVU2413at 2520.258 kb on + strand, within DVU2413at 2520.384 kb on + strand, within DVU2413at 2520.392 kb on - strand, within DVU2413at 2520.392 kb on - strand, within DVU2413at 2520.392 kb on - strand, within DVU2413at 2520.518 kb on - strandat 2520.661 kb on + strandat 2520.705 kb on + strandat 2520.705 kb on + strandat 2520.713 kb on - strandat 2520.972 kb on - strandat 2520.988 kb on - strandat 2521.004 kb on + strandat 2521.163 kb on - strand, within DVU2414at 2521.271 kb on - strand, within DVU2414at 2521.282 kb on + strand, within DVU2414at 2521.287 kb on + strand, within DVU2414at 2521.290 kb on - strand, within DVU2414at 2521.340 kb on - strand, within DVU2414at 2521.361 kb on - strand, within DVU2414at 2521.500 kb on + strand, within DVU2414at 2521.518 kb on + strand, within DVU2414at 2521.528 kb on + strand, within DVU2414at 2521.536 kb on - strand, within DVU2414at 2521.553 kb on + strand, within DVU2414at 2521.624 kb on + strand, within DVU2414at 2521.632 kb on - strand, within DVU2414at 2521.642 kb on - strand, within DVU2414at 2521.655 kb on - strand, within DVU2414at 2521.662 kb on + strand, within DVU2414at 2521.665 kb on + strand, within DVU2414at 2521.798 kb on + strand, within DVU2414at 2521.801 kb on - strand, within DVU2414at 2521.806 kb on - strand, within DVU2414at 2521.839 kb on - strand, within DVU2414at 2521.854 kb on + strand, within DVU2414at 2521.933 kb on + strand, within DVU2414at 2521.933 kb on + strand, within DVU2414at 2521.941 kb on - strand, within DVU2414at 2521.941 kb on - strand, within DVU2414at 2522.023 kb on + strand, within DVU2414at 2522.137 kb on + strand, within DVU2414at 2522.295 kb on - strand, within DVU2414at 2522.320 kb on + strand, within DVU2414at 2522.328 kb on - strand, within DVU2414at 2522.605 kb on - strandat 2522.605 kb on - strandat 2522.608 kb on + strandat 2522.624 kb on - strandat 2522.626 kb on + strandat 2522.626 kb on + strandat 2522.626 kb on + strandat 2522.634 kb on - strandat 2522.634 kb on - strandat 2522.634 kb on - strandat 2522.717 kb on + strandat 2522.779 kb on - strandat 2522.826 kb on + strandat 2522.907 kb on + strandat 2522.921 kb on + strandat 2522.929 kb on + strandat 2522.951 kb on + strandat 2522.990 kb on + strandat 2523.047 kb on - strandat 2523.048 kb on + strandat 2523.082 kb on + strandat 2523.173 kb on - strand, within DVU2415at 2523.384 kb on + strand, within DVU2415at 2523.414 kb on + strand, within DVU2415at 2523.455 kb on - strand, within DVU2415at 2523.483 kb on + strand, within DVU2415at 2523.505 kb on + strand, within DVU2415at 2523.517 kb on + strand, within DVU2415

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without W
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2,519,855 + DVU2413 0.62 -0.2
2,519,961 + DVU2413 0.67 +0.2
2,519,961 + DVU2413 0.67 -0.6
2,519,969 - DVU2413 0.67 -0.4
2,519,969 - DVU2413 0.67 +1.0
2,519,969 - DVU2413 0.67 -1.3
2,519,977 + DVU2413 0.68 -0.5
2,520,058 + DVU2413 0.72 -2.8
2,520,154 - DVU2413 0.76 +0.1
2,520,166 - DVU2413 0.77 -0.8
2,520,166 - DVU2413 0.77 +0.6
2,520,166 - DVU2413 0.77 +0.6
2,520,179 - DVU2413 0.78 +0.3
2,520,179 - DVU2413 0.78 -0.0
2,520,203 + DVU2413 0.79 -0.2
2,520,222 + DVU2413 0.80 -0.2
2,520,258 + DVU2413 0.81 -0.2
2,520,384 + DVU2413 0.88 -0.2
2,520,392 - DVU2413 0.88 -0.2
2,520,392 - DVU2413 0.88 -1.0
2,520,392 - DVU2413 0.88 +0.3
2,520,518 - +1.0
2,520,661 + -0.2
2,520,705 + +0.3
2,520,705 + -0.4
2,520,713 - -0.5
2,520,972 - +0.0
2,520,988 - +0.9
2,521,004 + +0.1
2,521,163 - DVU2414 0.19 +0.1
2,521,271 - DVU2414 0.25 -0.3
2,521,282 + DVU2414 0.26 +2.4
2,521,287 + DVU2414 0.26 +0.3
2,521,290 - DVU2414 0.26 -0.0
2,521,340 - DVU2414 0.29 +1.0
2,521,361 - DVU2414 0.30 +0.3
2,521,500 + DVU2414 0.38 -0.7
2,521,518 + DVU2414 0.39 -0.5
2,521,528 + DVU2414 0.40 +2.2
2,521,536 - DVU2414 0.40 +1.2
2,521,553 + DVU2414 0.41 +0.5
2,521,624 + DVU2414 0.45 -0.1
2,521,632 - DVU2414 0.45 -0.6
2,521,642 - DVU2414 0.46 +0.1
2,521,655 - DVU2414 0.47 +0.2
2,521,662 + DVU2414 0.47 +1.2
2,521,665 + DVU2414 0.47 +1.1
2,521,798 + DVU2414 0.55 +0.0
2,521,801 - DVU2414 0.55 +0.1
2,521,806 - DVU2414 0.55 -0.1
2,521,839 - DVU2414 0.57 -0.3
2,521,854 + DVU2414 0.58 +0.3
2,521,933 + DVU2414 0.63 -0.2
2,521,933 + DVU2414 0.63 +1.1
2,521,941 - DVU2414 0.63 -0.2
2,521,941 - DVU2414 0.63 +0.7
2,522,023 + DVU2414 0.68 +0.0
2,522,137 + DVU2414 0.74 +0.4
2,522,295 - DVU2414 0.83 -0.0
2,522,320 + DVU2414 0.85 +0.7
2,522,328 - DVU2414 0.85 +0.3
2,522,605 - -0.3
2,522,605 - -0.9
2,522,608 + +0.0
2,522,624 - -0.4
2,522,626 + +0.0
2,522,626 + +0.3
2,522,626 + -0.1
2,522,634 - -0.3
2,522,634 - -0.3
2,522,634 - +0.2
2,522,717 + +0.0
2,522,779 - -1.5
2,522,826 + -0.3
2,522,907 + -0.5
2,522,921 + +0.1
2,522,929 + -1.0
2,522,951 + +0.2
2,522,990 + +0.2
2,523,047 - -1.0
2,523,048 + -0.1
2,523,082 + -0.3
2,523,173 - DVU2415 0.16 -0.6
2,523,384 + DVU2415 0.31 -0.0
2,523,414 + DVU2415 0.33 +0.1
2,523,455 - DVU2415 0.36 -0.6
2,523,483 + DVU2415 0.38 -0.5
2,523,505 + DVU2415 0.39 -0.6
2,523,517 + DVU2415 0.40 +0.2

Or see this region's nucleotide sequence