Experiment: MoLS4 with L-Serine (N), without W
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hydH and atoC overlap by 4 nucleotides atoC and DVU1420 are separated by 60 nucleotides DVU1420 and DVU1421 are separated by 199 nucleotides
DVU1418: hydH - sensory box histidine kinase (TIGR), at 1,491,108 to 1,492,847
hydH
DVU1419: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,492,844 to 1,494,223
atoC
DVU1420: DVU1420 - Hpt domain protein (TIGR), at 1,494,284 to 1,494,655
DVU1420
DVU1421: DVU1421 - hypothetical protein (TIGR), at 1,494,855 to 1,495,316
DVU1421
Position (kb)
1492
1493
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1 at 1491.864 kb on + strand, within hydH at 1491.871 kb on + strand, within hydH at 1491.896 kb on + strand, within hydH at 1491.923 kb on + strand, within hydH at 1491.929 kb on + strand, within hydH at 1492.093 kb on - strand, within hydH at 1492.165 kb on - strand, within hydH at 1492.165 kb on - strand, within hydH at 1492.173 kb on - strand, within hydH at 1492.209 kb on + strand, within hydH at 1492.283 kb on - strand, within hydH at 1492.336 kb on - strand, within hydH at 1492.349 kb on + strand, within hydH at 1492.445 kb on + strand, within hydH at 1492.486 kb on + strand, within hydH at 1492.494 kb on - strand, within hydH at 1492.494 kb on - strand, within hydH at 1492.573 kb on + strand, within hydH at 1492.581 kb on - strand, within hydH at 1492.581 kb on - strand, within hydH at 1492.581 kb on - strand, within hydH at 1492.628 kb on + strand, within hydH at 1492.665 kb on + strand, within hydH at 1493.021 kb on - strand, within atoC at 1493.122 kb on - strand, within atoC at 1493.198 kb on - strand, within atoC at 1493.293 kb on - strand, within atoC at 1493.366 kb on + strand, within atoC at 1493.366 kb on + strand, within atoC at 1493.636 kb on + strand, within atoC at 1493.733 kb on - strand, within atoC at 1493.964 kb on + strand, within atoC at 1493.994 kb on - strand, within atoC at 1494.114 kb on + strand at 1494.155 kb on + strand at 1494.236 kb on + strand at 1494.236 kb on + strand at 1494.272 kb on + strand at 1494.279 kb on + strand at 1494.360 kb on - strand, within DVU1420 at 1494.693 kb on - strand at 1494.732 kb on - strand at 1494.732 kb on - strand at 1494.732 kb on - strand at 1494.736 kb on + strand at 1494.927 kb on + strand, within DVU1421 at 1495.123 kb on - strand, within DVU1421 at 1495.154 kb on - strand, within DVU1421 at 1495.159 kb on - strand, within DVU1421
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without W remove 1,491,864 + hydH DVU1418 0.43 -0.2 1,491,871 + hydH DVU1418 0.44 +0.9 1,491,896 + hydH DVU1418 0.45 -0.2 1,491,923 + hydH DVU1418 0.47 -0.2 1,491,929 + hydH DVU1418 0.47 -1.0 1,492,093 - hydH DVU1418 0.57 -2.1 1,492,165 - hydH DVU1418 0.61 -0.4 1,492,165 - hydH DVU1418 0.61 +0.7 1,492,173 - hydH DVU1418 0.61 +1.3 1,492,209 + hydH DVU1418 0.63 +1.1 1,492,283 - hydH DVU1418 0.68 -0.3 1,492,336 - hydH DVU1418 0.71 -0.5 1,492,349 + hydH DVU1418 0.71 -0.1 1,492,445 + hydH DVU1418 0.77 -0.3 1,492,486 + hydH DVU1418 0.79 -0.5 1,492,494 - hydH DVU1418 0.80 -1.5 1,492,494 - hydH DVU1418 0.80 -0.6 1,492,573 + hydH DVU1418 0.84 -1.1 1,492,581 - hydH DVU1418 0.85 +1.2 1,492,581 - hydH DVU1418 0.85 -0.1 1,492,581 - hydH DVU1418 0.85 -0.3 1,492,628 + hydH DVU1418 0.87 -0.6 1,492,665 + hydH DVU1418 0.89 +0.1 1,493,021 - atoC DVU1419 0.13 -0.7 1,493,122 - atoC DVU1419 0.20 -1.4 1,493,198 - atoC DVU1419 0.26 -1.0 1,493,293 - atoC DVU1419 0.33 -0.8 1,493,366 + atoC DVU1419 0.38 -1.0 1,493,366 + atoC DVU1419 0.38 -1.2 1,493,636 + atoC DVU1419 0.57 -0.1 1,493,733 - atoC DVU1419 0.64 -0.8 1,493,964 + atoC DVU1419 0.81 -0.7 1,493,994 - atoC DVU1419 0.83 -0.3 1,494,114 + +0.6 1,494,155 + -0.9 1,494,236 + +0.3 1,494,236 + -0.0 1,494,272 + -0.4 1,494,279 + -1.8 1,494,360 - DVU1420 0.20 +0.3 1,494,693 - -0.9 1,494,732 - -0.2 1,494,732 - -0.6 1,494,732 - +0.0 1,494,736 + -0.7 1,494,927 + DVU1421 0.16 -0.2 1,495,123 - DVU1421 0.58 -1.2 1,495,154 - DVU1421 0.65 -0.1 1,495,159 - DVU1421 0.66 -1.2
Or see this region's nucleotide sequence