Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0961

Experiment: MoLS4 with L-Serine (N), without W

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaB and DVU0961 are separated by 401 nucleotidesDVU0961 and DVU0963 are separated by 461 nucleotides DVU0959: dnaB - replicative DNA helicase (TIGR), at 1,052,516 to 1,053,997 dnaB DVU0961: DVU0961 - conserved hypothetical protein (TIGR), at 1,054,399 to 1,058,463 DVU0961 DVU0963: DVU0963 - GTP cyclohydrolase I family protein (TIGR), at 1,058,925 to 1,059,422 DVU0963 Position (kb) 1054 1055 1056 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1054.089 kb on + strandat 1054.089 kb on + strandat 1054.121 kb on - strandat 1054.191 kb on - strandat 1054.287 kb on + strandat 1054.295 kb on + strandat 1054.311 kb on + strandat 1054.311 kb on + strandat 1054.321 kb on - strandat 1054.323 kb on + strandat 1054.323 kb on + strandat 1054.364 kb on + strandat 1054.459 kb on - strandat 1054.505 kb on + strandat 1054.609 kb on + strandat 1054.617 kb on - strandat 1054.785 kb on + strandat 1054.856 kb on + strand, within DVU0961at 1054.865 kb on - strand, within DVU0961at 1054.989 kb on - strand, within DVU0961at 1055.022 kb on - strand, within DVU0961at 1055.051 kb on + strand, within DVU0961at 1055.054 kb on - strand, within DVU0961at 1055.113 kb on + strand, within DVU0961at 1055.226 kb on + strand, within DVU0961at 1055.290 kb on - strand, within DVU0961at 1055.384 kb on + strand, within DVU0961at 1055.405 kb on + strand, within DVU0961at 1055.458 kb on - strand, within DVU0961at 1055.480 kb on + strand, within DVU0961at 1055.488 kb on - strand, within DVU0961at 1055.488 kb on - strand, within DVU0961at 1055.537 kb on - strand, within DVU0961at 1055.623 kb on - strand, within DVU0961at 1055.741 kb on + strand, within DVU0961at 1055.742 kb on - strand, within DVU0961at 1055.821 kb on - strand, within DVU0961at 1055.937 kb on - strand, within DVU0961at 1055.993 kb on - strand, within DVU0961at 1055.997 kb on + strand, within DVU0961at 1056.092 kb on - strand, within DVU0961at 1056.122 kb on + strand, within DVU0961at 1056.130 kb on - strand, within DVU0961at 1056.161 kb on - strand, within DVU0961at 1056.285 kb on + strand, within DVU0961at 1056.293 kb on - strand, within DVU0961at 1056.293 kb on - strand, within DVU0961at 1056.343 kb on - strand, within DVU0961at 1056.392 kb on - strand, within DVU0961at 1056.394 kb on + strand, within DVU0961at 1056.397 kb on - strand, within DVU0961at 1056.440 kb on + strand, within DVU0961at 1056.458 kb on - strand, within DVU0961at 1056.467 kb on + strand, within DVU0961at 1056.535 kb on - strand, within DVU0961at 1056.639 kb on + strand, within DVU0961at 1056.704 kb on - strand, within DVU0961at 1056.716 kb on - strand, within DVU0961at 1057.009 kb on - strand, within DVU0961at 1057.038 kb on + strand, within DVU0961at 1057.085 kb on - strand, within DVU0961at 1057.098 kb on + strand, within DVU0961at 1057.142 kb on + strand, within DVU0961at 1057.343 kb on - strand, within DVU0961at 1057.358 kb on + strand, within DVU0961at 1057.368 kb on - strand, within DVU0961at 1057.386 kb on - strand, within DVU0961at 1057.397 kb on - strand, within DVU0961at 1057.436 kb on + strand, within DVU0961at 1057.436 kb on + strand, within DVU0961at 1057.502 kb on - strand, within DVU0961at 1057.502 kb on - strand, within DVU0961at 1057.579 kb on + strand, within DVU0961at 1057.582 kb on - strand, within DVU0961at 1057.589 kb on + strand, within DVU0961at 1057.609 kb on - strand, within DVU0961at 1057.609 kb on - strand, within DVU0961at 1057.611 kb on + strand, within DVU0961at 1057.624 kb on + strand, within DVU0961at 1057.655 kb on + strand, within DVU0961at 1057.655 kb on + strand, within DVU0961at 1057.663 kb on - strand, within DVU0961at 1057.700 kb on + strand, within DVU0961at 1057.776 kb on - strand, within DVU0961at 1057.851 kb on + strand, within DVU0961at 1057.890 kb on - strand, within DVU0961at 1057.897 kb on + strand, within DVU0961at 1057.897 kb on + strand, within DVU0961at 1057.929 kb on + strand, within DVU0961at 1057.938 kb on - strand, within DVU0961at 1057.988 kb on + strand, within DVU0961at 1058.046 kb on - strand, within DVU0961at 1058.124 kb on - strandat 1058.143 kb on + strandat 1058.158 kb on + strandat 1058.201 kb on - strandat 1058.220 kb on + strandat 1058.220 kb on + strandat 1058.220 kb on + strandat 1058.222 kb on + strandat 1058.228 kb on - strandat 1058.230 kb on - strandat 1058.261 kb on + strandat 1058.415 kb on + strandat 1058.415 kb on + strandat 1058.423 kb on - strandat 1058.492 kb on - strandat 1058.515 kb on - strandat 1058.515 kb on - strandat 1058.517 kb on - strandat 1058.572 kb on - strandat 1058.638 kb on + strandat 1058.646 kb on - strandat 1058.647 kb on + strandat 1058.651 kb on - strandat 1058.675 kb on - strandat 1058.727 kb on + strandat 1058.804 kb on + strandat 1058.817 kb on - strandat 1058.830 kb on - strandat 1058.830 kb on - strandat 1058.830 kb on - strandat 1058.891 kb on - strandat 1058.924 kb on + strandat 1059.032 kb on + strand, within DVU0963at 1059.250 kb on - strand, within DVU0963at 1059.292 kb on + strand, within DVU0963at 1059.300 kb on - strand, within DVU0963at 1059.325 kb on + strand, within DVU0963at 1059.340 kb on + strand, within DVU0963at 1059.390 kb on - strandat 1059.390 kb on - strandat 1059.396 kb on + strandat 1059.431 kb on + strandat 1059.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N), without W
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1,054,089 + -0.4
1,054,089 + +0.2
1,054,121 - -1.1
1,054,191 - -0.9
1,054,287 + -0.1
1,054,295 + -0.2
1,054,311 + +0.0
1,054,311 + +0.5
1,054,321 - +0.1
1,054,323 + -0.4
1,054,323 + -0.3
1,054,364 + +0.5
1,054,459 - +0.5
1,054,505 + -0.3
1,054,609 + -1.9
1,054,617 - +0.4
1,054,785 + -1.0
1,054,856 + DVU0961 0.11 -1.0
1,054,865 - DVU0961 0.11 -0.7
1,054,989 - DVU0961 0.15 -0.8
1,055,022 - DVU0961 0.15 -0.8
1,055,051 + DVU0961 0.16 +2.8
1,055,054 - DVU0961 0.16 -0.4
1,055,113 + DVU0961 0.18 -0.8
1,055,226 + DVU0961 0.20 +0.2
1,055,290 - DVU0961 0.22 -0.5
1,055,384 + DVU0961 0.24 +0.8
1,055,405 + DVU0961 0.25 -0.4
1,055,458 - DVU0961 0.26 -0.6
1,055,480 + DVU0961 0.27 -0.5
1,055,488 - DVU0961 0.27 -0.6
1,055,488 - DVU0961 0.27 -0.4
1,055,537 - DVU0961 0.28 +1.7
1,055,623 - DVU0961 0.30 -0.4
1,055,741 + DVU0961 0.33 -0.7
1,055,742 - DVU0961 0.33 +0.8
1,055,821 - DVU0961 0.35 -0.8
1,055,937 - DVU0961 0.38 -1.5
1,055,993 - DVU0961 0.39 -0.1
1,055,997 + DVU0961 0.39 -0.7
1,056,092 - DVU0961 0.42 -2.3
1,056,122 + DVU0961 0.42 -1.0
1,056,130 - DVU0961 0.43 -0.6
1,056,161 - DVU0961 0.43 -0.5
1,056,285 + DVU0961 0.46 -0.3
1,056,293 - DVU0961 0.47 -0.2
1,056,293 - DVU0961 0.47 -1.0
1,056,343 - DVU0961 0.48 -0.6
1,056,392 - DVU0961 0.49 +2.0
1,056,394 + DVU0961 0.49 -1.3
1,056,397 - DVU0961 0.49 -1.0
1,056,440 + DVU0961 0.50 -1.8
1,056,458 - DVU0961 0.51 -0.8
1,056,467 + DVU0961 0.51 -0.9
1,056,535 - DVU0961 0.53 -0.8
1,056,639 + DVU0961 0.55 -0.5
1,056,704 - DVU0961 0.57 -0.3
1,056,716 - DVU0961 0.57 -1.2
1,057,009 - DVU0961 0.64 -0.6
1,057,038 + DVU0961 0.65 -0.3
1,057,085 - DVU0961 0.66 +0.6
1,057,098 + DVU0961 0.66 +0.3
1,057,142 + DVU0961 0.67 -0.7
1,057,343 - DVU0961 0.72 -0.1
1,057,358 + DVU0961 0.73 -1.0
1,057,368 - DVU0961 0.73 -0.8
1,057,386 - DVU0961 0.73 +0.7
1,057,397 - DVU0961 0.74 -1.1
1,057,436 + DVU0961 0.75 -0.2
1,057,436 + DVU0961 0.75 +0.3
1,057,502 - DVU0961 0.76 -0.2
1,057,502 - DVU0961 0.76 -0.7
1,057,579 + DVU0961 0.78 +0.0
1,057,582 - DVU0961 0.78 -0.3
1,057,589 + DVU0961 0.78 -2.0
1,057,609 - DVU0961 0.79 -0.3
1,057,609 - DVU0961 0.79 -0.3
1,057,611 + DVU0961 0.79 -0.2
1,057,624 + DVU0961 0.79 -0.4
1,057,655 + DVU0961 0.80 -0.8
1,057,655 + DVU0961 0.80 -1.3
1,057,663 - DVU0961 0.80 -0.6
1,057,700 + DVU0961 0.81 +0.9
1,057,776 - DVU0961 0.83 -1.1
1,057,851 + DVU0961 0.85 -0.4
1,057,890 - DVU0961 0.86 -0.9
1,057,897 + DVU0961 0.86 +0.8
1,057,897 + DVU0961 0.86 -0.9
1,057,929 + DVU0961 0.87 -0.1
1,057,938 - DVU0961 0.87 -0.7
1,057,988 + DVU0961 0.88 -0.9
1,058,046 - DVU0961 0.90 +0.2
1,058,124 - -1.1
1,058,143 + -0.3
1,058,158 + +0.5
1,058,201 - -0.9
1,058,220 + +0.1
1,058,220 + +0.4
1,058,220 + -0.5
1,058,222 + -0.5
1,058,228 - -2.7
1,058,230 - -0.3
1,058,261 + -2.4
1,058,415 + -0.6
1,058,415 + -0.3
1,058,423 - -0.2
1,058,492 - -0.4
1,058,515 - -0.6
1,058,515 - +0.2
1,058,517 - -0.7
1,058,572 - -0.4
1,058,638 + +0.4
1,058,646 - +0.6
1,058,647 + +0.0
1,058,651 - +0.5
1,058,675 - +0.2
1,058,727 + +0.1
1,058,804 + +0.1
1,058,817 - +0.1
1,058,830 - -0.2
1,058,830 - -0.0
1,058,830 - +0.1
1,058,891 - +0.4
1,058,924 + -0.1
1,059,032 + DVU0963 0.21 +0.1
1,059,250 - DVU0963 0.65 -0.1
1,059,292 + DVU0963 0.74 -0.5
1,059,300 - DVU0963 0.75 -1.4
1,059,325 + DVU0963 0.80 -0.2
1,059,340 + DVU0963 0.83 -0.5
1,059,390 - +0.0
1,059,390 - +0.5
1,059,396 + -0.3
1,059,431 + +0.7
1,059,451 - +0.0

Or see this region's nucleotide sequence