Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08405

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos 10mM Ammonium chloride
1,545,743	-				-0.3
1,545,772	+				-0.1
1,545,804	+				+0.1
1,545,828	-				-0.4
1,545,839	-				-0.3
1,545,862	-				-1.3
1,545,879	-				+0.8
1,545,915	-		MMJJ_RS08400	0.13	-1.0
1,546,054	-		MMJJ_RS08400	0.37	+0.4
1,546,055	+		MMJJ_RS08400	0.37	-0.4
1,546,091	-		MMJJ_RS08400	0.44	-0.5
1,546,132	+		MMJJ_RS08400	0.51	+0.6
1,546,392	-				-0.7
1,546,393	+				-0.5
1,546,402	+				+0.7
1,546,437	-				+0.9
1,546,437	-				-0.3
1,546,438	+				+0.1
1,546,438	+				+1.9
1,546,443	+				+0.9
1,546,464	-				-0.1
1,546,464	-				-0.2
1,546,465	+				-0.1
1,546,466	-				+0.2
1,546,466	-				+0.9
1,546,466	-				-0.6
1,546,466	-				+0.1
1,546,466	-				-0.2
1,546,466	-				+0.6
1,546,466	-				-0.3
1,546,466	-				+0.6
1,546,466	-				-2.5
1,546,466	-				-0.0
1,546,466	-				+0.4
1,546,467	+				-0.1
1,546,467	+				-0.4
1,546,467	+				+0.1
1,546,467	+				+0.5
1,546,467	+				+0.4
1,546,467	+				+0.3
1,546,467	+				+1.0
1,546,467	+				+0.5
1,546,467	+				+0.2
1,546,467	+				+0.8
1,546,468	-				+1.4
1,546,468	-				+0.0
1,546,468	-				+0.2
1,546,468	-				-0.1
1,546,468	-				+0.2
1,546,468	-				+1.1
1,546,469	+				+0.6
1,546,469	+				+0.4
1,546,469	+				+0.3
1,546,469	+				-0.5
1,546,469	+				-0.1
1,546,469	+				+0.4
1,546,469	+				-0.6
1,546,469	+				+0.5
1,546,469	+				+0.4
1,546,469	+				-0.4
1,546,485	-				+0.5
1,546,487	-				+1.8
1,546,488	+				-0.0
1,546,489	-				+0.2
1,546,489	-				+0.3
1,546,490	+				+0.0
1,546,490	+				-0.2
1,546,490	+				+0.3
1,546,490	+				+0.3
1,546,492	-				-0.6
1,546,493	+				+0.6
1,546,495	+				-1.0
1,546,495	+				+1.1
1,546,495	+				+0.8
1,546,502	-				-1.7
1,546,520	-				-0.1
1,546,520	-				-0.7
1,546,520	-				+0.5
1,546,521	+				+0.1
1,546,521	+				+0.4
1,546,528	+				-3.1
1,546,530	-				-1.2
1,546,531	+				-0.8
1,546,533	-				-0.4
1,546,533	-				+1.1
1,546,533	-				-1.3
1,546,533	-				-2.9
1,546,534	+				-0.6
1,546,535	-				-2.3
1,546,535	-				-1.8
1,546,535	-				-2.1
1,546,535	-				-2.8
1,546,535	-				-2.3
1,546,535	-				-1.2
1,546,535	-				-1.4
1,546,535	-				-0.7
1,546,536	+				-0.9
1,546,536	+				-4.3
1,546,536	+				-2.8
1,546,536	+				-1.5
1,546,536	+				-3.5
1,546,536	+				-0.5
1,546,536	+				-1.7
1,546,536	+				-1.2
1,546,536	+				-0.0
1,546,539	-				-2.4
1,546,539	-				-1.4
1,546,539	-				-3.3
1,546,539	-				-2.8
1,546,539	-				-1.3
1,546,539	-				-0.4
1,546,539	-				-3.0
1,546,539	-				-1.1
1,546,539	-				-1.3
1,546,549	-				-1.0
1,546,549	-				-1.3
1,546,549	-				-2.3
1,546,549	-				-2.8
1,546,550	+				-2.4
1,546,550	+				-0.1
1,546,550	+				-1.6
1,546,550	+				-1.3
1,546,556	-				-1.1
1,546,556	-				-3.6
1,546,566	+				-1.6
1,546,616	-				-1.7
1,546,617	+				-2.1
1,546,617	+				+0.5
1,546,647	-				-2.1
1,546,683	+				-2.7
1,546,716	+				-3.5
1,546,729	-				-1.5
1,546,730	+				-4.1
1,546,732	-				-3.0
1,546,732	-				-2.8
1,546,733	+				-3.5
1,546,748	-				-0.2
1,546,760	+		MMJJ_RS08405	0.10	-2.7
1,546,814	-		MMJJ_RS08405	0.15	-1.2
1,546,814	-		MMJJ_RS08405	0.15	-2.9
1,546,820	+		MMJJ_RS08405	0.16	-2.7
1,546,925	+		MMJJ_RS08405	0.25	-1.6
1,546,932	+		MMJJ_RS08405	0.26	-1.9
1,546,946	+		MMJJ_RS08405	0.27	-2.2
1,546,964	-		MMJJ_RS08405	0.28	-2.3
1,546,964	-		MMJJ_RS08405	0.28	-1.1
1,546,964	-		MMJJ_RS08405	0.28	-2.1
1,546,965	+		MMJJ_RS08405	0.28	+0.1
1,546,970	+		MMJJ_RS08405	0.29	-2.2
1,547,016	+		MMJJ_RS08405	0.33	-2.3
1,547,033	+		MMJJ_RS08405	0.34	-2.1
1,547,085	-		MMJJ_RS08405	0.39	-2.4
1,547,150	-		MMJJ_RS08405	0.45	-2.8
1,547,150	-		MMJJ_RS08405	0.45	-2.6
1,547,150	-		MMJJ_RS08405	0.45	-1.5
1,547,151	+		MMJJ_RS08405	0.45	-4.2
1,547,151	+		MMJJ_RS08405	0.45	-1.7
1,547,151	+		MMJJ_RS08405	0.45	-3.4
1,547,151	+		MMJJ_RS08405	0.45	-1.1
1,547,151	+		MMJJ_RS08405	0.45	+0.1
1,547,151	+		MMJJ_RS08405	0.45	-1.1
1,547,151	+		MMJJ_RS08405	0.45	-1.9
1,547,152	-		MMJJ_RS08405	0.45	+0.2
1,547,152	-		MMJJ_RS08405	0.45	-1.3
1,547,152	-				-1.5
1,547,152	-		MMJJ_RS08405	0.45	-2.1
1,547,152	-		MMJJ_RS08405	0.45	-2.8
1,547,152	-		MMJJ_RS08405	0.45	-3.5
1,547,153	+		MMJJ_RS08405	0.45	-2.3
1,547,153	+		MMJJ_RS08405	0.45	-1.4
1,547,153	+		MMJJ_RS08405	0.45	-1.2
1,547,153	+		MMJJ_RS08405	0.45	-0.1
1,547,153	+		MMJJ_RS08405	0.45	-3.1
1,547,153	+		MMJJ_RS08405	0.45	-1.3
1,547,173	+		MMJJ_RS08405	0.47	-3.9
1,547,237	+		MMJJ_RS08405	0.53	-3.0
1,547,252	+		MMJJ_RS08405	0.54	-2.4
1,547,258	-		MMJJ_RS08405	0.54	-1.7
1,547,294	-		MMJJ_RS08405	0.58	-2.6
1,547,294	-		MMJJ_RS08405	0.58	-2.6
1,547,306	-		MMJJ_RS08405	0.59	-3.1
1,547,353	+		MMJJ_RS08405	0.63	-1.7
1,547,362	+		MMJJ_RS08405	0.64	-2.9
1,547,424	-		MMJJ_RS08405	0.69	-1.7
1,547,424	-		MMJJ_RS08405	0.69	-4.2
1,547,425	+		MMJJ_RS08405	0.69	-0.8
1,547,453	+		MMJJ_RS08405	0.72	-2.3
1,547,474	+		MMJJ_RS08405	0.74	-1.2
1,547,661	+				-1.9
1,547,665	-				+0.9
1,547,666	+				-1.5
1,547,680	-				-2.9
1,547,681	+				-0.6
1,547,681	+				-1.9
1,547,681	+				-2.9
1,547,695	-				-1.2
1,547,695	-				-1.5
1,547,698	-				-1.4
1,547,723	-				-2.4
1,547,724	+				-2.3
1,547,724	+				-2.2
1,547,724	+				-2.1
1,547,729	-				-3.4
1,547,729	-				-1.9
1,547,730	+				-2.1
1,547,735	-				-2.5
1,547,736	+				-2.7
1,547,736	+				-1.7
1,547,762	-				+0.6
1,547,763	+				+0.1
1,547,763	+				-0.1
1,547,769	-				+0.3
1,547,785	-				-0.7
1,547,785	-				+0.4
1,547,785	-				+0.7
1,547,786	+				+0.6
1,547,786	+				+0.3
1,547,786	+				-0.4
1,547,786	+				+0.9
1,547,786	+				+0.5
1,547,786	+				-1.0
1,547,790	+				-0.9
1,547,790	+				+0.3
1,547,790	+				+0.7
1,547,790	+				-0.4
1,547,790	+				+0.4
1,547,792	+				+0.2
1,547,792	+				-1.9
1,547,792	+				-0.5
1,547,792	+				+1.6
1,547,792	+				-0.3
1,547,792	+				+0.8
1,547,792	+				+0.0
1,547,793	-				-0.5
1,547,793	-				-0.1
1,547,793	-				+0.7
1,547,793	-				+0.3
1,547,793	-				+0.6
1,547,793	-				+0.5
1,547,794	+				+0.9
1,547,794	+				+0.1
1,547,794	+				-1.1
1,547,794	+				+1.0
1,547,794	+				+0.4
1,547,796	-				-0.3
1,547,797	+				+0.6
1,547,831	+				-0.2
1,547,838	-				+0.1
1,547,839	+				+0.6
1,547,839	+				-0.5
1,547,898	-		MMJJ_RS08410	0.18	+0.6
1,547,899	+		MMJJ_RS08410	0.19	-1.8
1,548,008	+		MMJJ_RS08410	0.49	+0.7
1,548,070	+		MMJJ_RS08410	0.66	+0.1
1,548,081	-		MMJJ_RS08410	0.69	-0.1
1,548,096	-		MMJJ_RS08410	0.73	-0.6
1,548,211	-				+0.0
1,548,212	+				+0.1
1,548,243	-				+0.5
1,548,247	-				+0.7
1,548,247	-				+0.8
1,548,247	-				-0.1
1,548,247	-				-0.8
1,548,248	+				-0.7
1,548,273	-				-0.2
1,548,276	+				+0.2
1,548,305	-				-2.0
1,548,326	+				-1.5
1,548,328	+				-0.3
1,548,328	+				-0.1
1,548,340	-				+1.1
1,548,340	-				-0.2
1,548,341	+				+0.1
1,548,455	-		MMJJ_RS08415	0.14	+0.1
1,548,469	-		MMJJ_RS08415	0.16	-2.4
1,548,497	+		MMJJ_RS08415	0.20	-0.5
1,548,517	-		MMJJ_RS08415	0.23	+0.6
1,548,517	-		MMJJ_RS08415	0.23	+1.6
1,548,517	-		MMJJ_RS08415	0.23	+0.9
1,548,517	-		MMJJ_RS08415	0.23	-1.9
1,548,517	-		MMJJ_RS08415	0.23	+1.2
1,548,517	-		MMJJ_RS08415	0.23	+0.8
1,548,518	+		MMJJ_RS08415	0.23	+0.0
1,548,518	+		MMJJ_RS08415	0.23	+0.3
1,548,518	+		MMJJ_RS08415	0.23	+0.7
1,548,518	+		MMJJ_RS08415	0.23	+1.6
1,548,518	+		MMJJ_RS08415	0.23	-0.1
1,548,543	-		MMJJ_RS08415	0.27	-1.0
1,548,559	-		MMJJ_RS08415	0.30	-0.2
1,548,560	+		MMJJ_RS08415	0.30	-0.4
1,548,582	-		MMJJ_RS08415	0.33	-0.5
1,548,682	-		MMJJ_RS08415	0.49	-0.9
1,548,682	-		MMJJ_RS08415	0.49	-0.7
1,548,683	+		MMJJ_RS08415	0.49	-0.2
1,548,683	+		MMJJ_RS08415	0.49	+0.7
1,548,729	-		MMJJ_RS08415	0.56	+0.4
1,548,729	-		MMJJ_RS08415	0.56	+0.4
1,548,730	+		MMJJ_RS08415	0.56	+1.7
1,548,730	+		MMJJ_RS08415	0.56	+0.3
1,548,730	+		MMJJ_RS08415	0.56	-2.4