Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08055

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos 10mM Ammonium chloride
1,473,754	+		MMJJ_RS08050	0.23	+0.8
1,473,794	+		MMJJ_RS08050	0.28	+0.6
1,473,804	-		MMJJ_RS08050	0.30	-1.3
1,473,804	-		MMJJ_RS08050	0.30	-0.0
1,473,804	-		MMJJ_RS08050	0.30	-0.1
1,473,806	-		MMJJ_RS08050	0.30	+0.0
1,473,806	-		MMJJ_RS08050	0.30	+0.5
1,473,806	-		MMJJ_RS08050	0.30	+1.0
1,473,806	-		MMJJ_RS08050	0.30	+0.0
1,473,806	-		MMJJ_RS08050	0.30	+0.0
1,473,806	-		MMJJ_RS08050	0.30	+0.9
1,473,806	-		MMJJ_RS08050	0.30	+1.3
1,473,806	-		MMJJ_RS08050	0.30	+1.6
1,473,807	+		MMJJ_RS08050	0.30	+0.1
1,473,807	+		MMJJ_RS08050	0.30	+0.7
1,473,807	+		MMJJ_RS08050	0.30	+0.4
1,473,807	+		MMJJ_RS08050	0.30	+0.3
1,473,807	+		MMJJ_RS08050	0.30	-0.4
1,473,837	-		MMJJ_RS08050	0.34	-1.7
1,473,838	+		MMJJ_RS08050	0.34	-1.2
1,473,838	+		MMJJ_RS08050	0.34	+0.6
1,473,859	-		MMJJ_RS08050	0.37	+0.3
1,473,859	-		MMJJ_RS08050	0.37	+0.6
1,473,859	-		MMJJ_RS08050	0.37	-0.6
1,473,860	+		MMJJ_RS08050	0.37	+0.3
1,473,870	-		MMJJ_RS08050	0.38	+0.5
1,473,870	-		MMJJ_RS08050	0.38	+0.1
1,473,871	+		MMJJ_RS08050	0.38	-0.1
1,473,892	-		MMJJ_RS08050	0.41	-0.4
1,473,892	-		MMJJ_RS08050	0.41	+0.5
1,473,892	-		MMJJ_RS08050	0.41	+0.4
1,473,893	+		MMJJ_RS08050	0.41	+0.3
1,473,893	+		MMJJ_RS08050	0.41	+0.5
1,473,893	+		MMJJ_RS08050	0.41	+0.8
1,473,894	-		MMJJ_RS08050	0.41	-0.4
1,473,894	-		MMJJ_RS08050	0.41	+0.5
1,473,894	-		MMJJ_RS08050	0.41	+0.5
1,473,894	-		MMJJ_RS08050	0.41	+0.6
1,473,895	+		MMJJ_RS08050	0.41	-1.4
1,473,895	+		MMJJ_RS08050	0.41	-0.3
1,473,895	+		MMJJ_RS08050	0.41	+1.5
1,473,938	+		MMJJ_RS08050	0.47	-0.1
1,473,981	-		MMJJ_RS08050	0.53	-0.2
1,473,981	-		MMJJ_RS08050	0.53	+0.4
1,473,981	-		MMJJ_RS08050	0.53	-1.8
1,473,981	-		MMJJ_RS08050	0.53	-0.4
1,473,981	-		MMJJ_RS08050	0.53	-0.4
1,473,981	-		MMJJ_RS08050	0.53	-0.1
1,473,982	+		MMJJ_RS08050	0.53	+0.4
1,473,982	+		MMJJ_RS08050	0.53	+1.2
1,473,982	+		MMJJ_RS08050	0.53	+0.7
1,473,982	+		MMJJ_RS08050	0.53	+0.1
1,473,982	+		MMJJ_RS08050	0.53	-1.2
1,473,982	+		MMJJ_RS08050	0.53	+0.9
1,473,982	+		MMJJ_RS08050	0.53	+0.6
1,473,993	-		MMJJ_RS08050	0.54	-0.4
1,473,993	-		MMJJ_RS08050	0.54	+0.3
1,473,993	-		MMJJ_RS08050	0.54	+0.2
1,473,993	-		MMJJ_RS08050	0.54	-0.3
1,473,994	+		MMJJ_RS08050	0.54	-0.1
1,473,994	+		MMJJ_RS08050	0.54	-0.9
1,473,994	+		MMJJ_RS08050	0.54	-0.9
1,473,994	+		MMJJ_RS08050	0.54	+0.9
1,473,994	+		MMJJ_RS08050	0.54	+1.3
1,473,994	+		MMJJ_RS08050	0.54	+1.6
1,474,129	-		MMJJ_RS08050	0.72	+0.8
1,474,192	+		MMJJ_RS08050	0.80	-0.3
1,474,230	+		MMJJ_RS08050	0.85	-0.3
1,474,244	-		MMJJ_RS08050	0.87	-0.8
1,474,245	+		MMJJ_RS08050	0.87	-0.5
1,474,249	-		MMJJ_RS08050	0.88	+0.8
1,474,249	-		MMJJ_RS08050	0.88	+0.0
1,474,249	-		MMJJ_RS08050	0.88	+0.6
1,474,250	+		MMJJ_RS08050	0.88	+0.9
1,474,250	+		MMJJ_RS08050	0.88	-0.0
1,474,252	-		MMJJ_RS08050	0.88	-0.5
1,474,253	+		MMJJ_RS08050	0.88	+1.7
1,474,253	+		MMJJ_RS08050	0.88	-0.2
1,474,254	-		MMJJ_RS08050	0.88	+0.6
1,474,276	-				+0.5
1,474,277	+				+0.5
1,474,277	+				+0.6
1,474,295	-				+0.6
1,474,296	+				+0.2
1,474,298	-				+1.0
1,474,314	+				-0.4
1,474,314	+				-1.4
1,474,316	-				+0.4
1,474,316	-				-0.3
1,474,316	-				+0.7
1,474,317	+				+0.3
1,474,317	+				+1.0
1,474,317	+				+0.2
1,474,317	+				+0.6
1,474,345	-				+0.2
1,474,346	+				-0.4
1,474,346	+				-1.2
1,474,346	+				+0.0
1,474,370	-				+0.3
1,474,371	+				+1.5
1,474,373	-				-0.1
1,474,373	-				-0.4
1,474,376	-				+1.0
1,474,377	+				-0.0
1,474,384	+				+0.7
1,474,388	-				+0.1
1,474,394	-				+0.3
1,474,394	-				+0.3
1,474,395	+				-0.0
1,474,395	+				+0.3
1,474,395	+				+0.4
1,474,396	-				-0.5
1,474,396	-				-0.3
1,474,397	+				-0.9
1,474,397	+				+1.1
1,474,397	+				-0.1
1,474,397	+				+0.7
1,474,397	+				+0.2
1,474,406	-				+1.0
1,474,424	+				-0.3
1,474,542	+				-0.5
1,474,543	-				+0.6
1,474,547	-				-1.2
1,474,548	+				-1.0
1,474,548	+				+0.1
1,474,548	+				-0.1
1,474,548	+				-0.1
1,474,548	+				+0.5
1,474,548	+				+0.2
1,474,548	+				+0.5
1,474,548	+				-0.4
1,474,549	-				-0.6
1,474,570	-				-0.7
1,474,570	-				+0.7
1,474,570	-				+0.0
1,474,570	-				-0.2
1,474,571	+				-1.0
1,474,571	+				-1.3
1,474,571	+				-1.0
1,474,591	-				-0.7
1,474,601	+				+1.7
1,474,617	+				-0.2
1,474,630	+				-3.4
1,474,630	+				-3.1
1,474,660	-				-1.2
1,474,681	-				-2.9
1,474,681	-				-3.7
1,474,682	+				-2.6
1,474,765	+				-2.8
1,474,767	+				-0.9
1,474,772	+				-2.1
1,474,811	-		MMJJ_RS08055	0.12	-2.9
1,474,845	-		MMJJ_RS08055	0.14	-1.2
1,474,846	+		MMJJ_RS08055	0.14	-2.6
1,474,846	+				-1.2
1,474,850	+		MMJJ_RS08055	0.15	-2.5
1,474,850	+		MMJJ_RS08055	0.15	-1.1
1,474,865	-		MMJJ_RS08055	0.16	+0.4
1,474,883	+		MMJJ_RS08055	0.17	+0.1
1,474,883	+		MMJJ_RS08055	0.17	-3.0
1,474,883	+		MMJJ_RS08055	0.17	-2.5
1,474,883	+		MMJJ_RS08055	0.17	-1.9
1,474,940	-				-1.2
1,475,312	-				-1.7
1,475,312	-		MMJJ_RS08055	0.46	-1.2
1,475,313	+		MMJJ_RS08055	0.46	-2.3
1,475,385	+		MMJJ_RS08055	0.51	-2.2
1,475,479	-		MMJJ_RS08055	0.57	-2.6
1,475,483	-		MMJJ_RS08055	0.58	-1.7
1,475,484	+				-0.9
1,475,503	-		MMJJ_RS08055	0.59	-2.7
1,475,578	-		MMJJ_RS08055	0.64	-2.0
1,475,578	-		MMJJ_RS08055	0.64	-1.5
1,475,579	+		MMJJ_RS08055	0.64	-3.0
1,475,582	+		MMJJ_RS08055	0.64	-2.3
1,475,759	+				-1.5
1,475,764	+		MMJJ_RS08055	0.77	-2.3
1,475,765	-				-0.2
1,475,765	-		MMJJ_RS08055	0.77	-3.3
1,475,771	+		MMJJ_RS08055	0.77	-2.8
1,475,771	+		MMJJ_RS08055	0.77	-3.3
1,475,859	+		MMJJ_RS08055	0.83	-3.5
1,475,876	-		MMJJ_RS08055	0.84	-3.8
1,476,061	-				-1.5
1,476,061	-				-1.8
1,476,119	+				-0.2
1,476,122	-				+0.1
1,476,194	+				-0.5
1,476,200	-				+0.2
1,476,200	-				+0.7
1,476,203	-				+0.4
1,476,204	+				-0.8
1,476,318	-		MMJJ_RS08060	0.12	-0.7
1,476,318	-		MMJJ_RS08060	0.12	-1.1
1,476,377	-		MMJJ_RS08060	0.18	+0.0
1,476,378	+		MMJJ_RS08060	0.18	-0.8
1,476,378	+		MMJJ_RS08060	0.18	+0.6
1,476,378	+		MMJJ_RS08060	0.18	-2.4
1,476,378	+		MMJJ_RS08060	0.18	-0.9
1,476,408	-		MMJJ_RS08060	0.21	-1.3
1,476,412	-		MMJJ_RS08060	0.22	-0.1
1,476,412	-		MMJJ_RS08060	0.22	-1.0
1,476,412	-		MMJJ_RS08060	0.22	-0.5
1,476,413	+		MMJJ_RS08060	0.22	-0.8
1,476,428	-		MMJJ_RS08060	0.23	-2.1
1,476,428	-		MMJJ_RS08060	0.23	-1.1
1,476,428	-		MMJJ_RS08060	0.23	-1.0
1,476,430	-		MMJJ_RS08060	0.24	-3.6
1,476,431	+		MMJJ_RS08060	0.24	-0.5
1,476,465	-		MMJJ_RS08060	0.27	-0.2
1,476,531	-		MMJJ_RS08060	0.34	-1.1
1,476,547	-		MMJJ_RS08060	0.36	+0.6
1,476,547	-		MMJJ_RS08060	0.36	-1.0
1,476,551	+		MMJJ_RS08060	0.36	-1.5
1,476,624	+		MMJJ_RS08060	0.44	-1.2
1,476,714	-		MMJJ_RS08060	0.53	-0.6
1,476,787	-		MMJJ_RS08060	0.60	+0.8
1,476,829	+		MMJJ_RS08060	0.65	-0.8
1,476,855	-		MMJJ_RS08060	0.67	+0.1
1,476,856	+		MMJJ_RS08060	0.67	-0.1
1,476,906	-		MMJJ_RS08060	0.73	+0.2
1,476,940	-		MMJJ_RS08060	0.76	+0.2
1,477,020	-		MMJJ_RS08060	0.84	-0.5
1,477,041	-		MMJJ_RS08060	0.87	-0.6
1,477,051	+		MMJJ_RS08060	0.88	+0.0