Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08010

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2g/L casaminos 10mM Ammonium chloride
1,466,244	+		MMJJ_RS08000	0.82	+3.3
1,466,291	-		MMJJ_RS08000	0.88	-2.4
1,466,342	-				-3.9
1,466,358	-				-1.0
1,466,359	+				-3.3
1,466,359	+				-1.6
1,466,375	+				-3.2
1,466,375	+				-3.4
1,466,377	-				-4.5
1,466,386	-				-1.1
1,466,398	-				+0.5
1,466,398	-				-0.2
1,466,398	-				-1.8
1,466,398	-				+0.5
1,466,398	-				-0.5
1,466,398	-				-0.8
1,466,398	-				+0.6
1,466,398	-				+0.6
1,466,398	-				+0.2
1,466,399	+				+0.6
1,466,399	+				+0.4
1,466,399	+				-0.0
1,466,399	+				-0.9
1,466,399	+				-0.7
1,466,399	+				+1.4
1,466,399	+				+0.2
1,466,399	+				-0.2
1,466,399	+				-0.8
1,466,400	-				-0.9
1,466,407	-				+0.6
1,466,407	-				-1.2
1,466,407	-				+0.1
1,466,407	-				+0.4
1,466,413	+				-0.3
1,466,414	-				+1.0
1,466,414	-				+0.9
1,466,414	-				-0.3
1,466,415	+				-0.3
1,466,415	+				-0.5
1,466,418	+				+0.4
1,466,418	+				+1.1
1,466,420	-				-0.7
1,466,420	-				+0.0
1,466,420	-				-0.5
1,466,429	-				+0.6
1,466,429	-				-0.9
1,466,430	+				-0.3
1,466,430	+				+0.5
1,466,460	+				+0.7
1,466,478	+				-0.8
1,466,484	-				-0.4
1,466,534	+		MMJJ_RS08005	0.11	+0.5
1,466,557	+		MMJJ_RS08005	0.15	+0.6
1,466,573	+		MMJJ_RS08005	0.17	-0.1
1,466,590	-		MMJJ_RS08005	0.19	-1.4
1,466,644	+		MMJJ_RS08005	0.27	+0.7
1,466,673	+		MMJJ_RS08005	0.31	+0.1
1,466,677	-		MMJJ_RS08005	0.32	-0.9
1,466,677	-		MMJJ_RS08005	0.32	-0.0
1,466,678	+		MMJJ_RS08005	0.32	-1.4
1,466,678	+		MMJJ_RS08005	0.32	-0.4
1,466,678	+		MMJJ_RS08005	0.32	+0.3
1,466,678	+		MMJJ_RS08005	0.32	-0.4
1,466,678	+		MMJJ_RS08005	0.32	-0.1
1,466,692	-		MMJJ_RS08005	0.34	-0.6
1,466,692	-		MMJJ_RS08005	0.34	-0.7
1,466,694	-		MMJJ_RS08005	0.34	-1.7
1,466,694	-		MMJJ_RS08005	0.34	+0.6
1,466,694	-		MMJJ_RS08005	0.34	+0.8
1,466,694	-		MMJJ_RS08005	0.34	+0.6
1,466,694	-		MMJJ_RS08005	0.34	-1.0
1,466,694	-		MMJJ_RS08005	0.34	+0.2
1,466,694	-		MMJJ_RS08005	0.34	-1.0
1,466,694	-		MMJJ_RS08005	0.34	-0.4
1,466,694	-		MMJJ_RS08005	0.34	+0.7
1,466,694	-		MMJJ_RS08005	0.34	-2.4
1,466,694	-		MMJJ_RS08005	0.34	-0.9
1,466,694	-		MMJJ_RS08005	0.34	-0.2
1,466,694	-		MMJJ_RS08005	0.34	-0.5
1,466,694	-		MMJJ_RS08005	0.34	-0.5
1,466,695	+		MMJJ_RS08005	0.34	-1.7
1,466,695	+		MMJJ_RS08005	0.34	-0.3
1,466,695	+		MMJJ_RS08005	0.34	+0.8
1,466,695	+		MMJJ_RS08005	0.34	-0.3
1,466,695	+		MMJJ_RS08005	0.34	-0.9
1,466,695	+		MMJJ_RS08005	0.34	-1.0
1,466,695	+		MMJJ_RS08005	0.34	-1.5
1,466,695	+		MMJJ_RS08005	0.34	+0.9
1,466,695	+		MMJJ_RS08005	0.34	-0.9
1,466,695	+		MMJJ_RS08005	0.34	-0.8
1,466,695	+		MMJJ_RS08005	0.34	-0.5
1,466,695	+		MMJJ_RS08005	0.34	+0.8
1,466,698	-		MMJJ_RS08005	0.35	-1.5
1,466,698	-		MMJJ_RS08005	0.35	-0.0
1,466,698	-		MMJJ_RS08005	0.35	-0.6
1,466,699	+		MMJJ_RS08005	0.35	+0.2
1,466,722	-		MMJJ_RS08005	0.38	+1.0
1,466,760	+		MMJJ_RS08005	0.44	+0.6
1,466,766	+		MMJJ_RS08005	0.44	+1.2
1,466,789	-		MMJJ_RS08005	0.48	-0.4
1,466,863	-		MMJJ_RS08005	0.58	+0.4
1,466,863	-		MMJJ_RS08005	0.58	-1.4
1,466,899	-		MMJJ_RS08005	0.63	-1.1
1,466,900	+		MMJJ_RS08005	0.64	+0.2
1,466,903	-		MMJJ_RS08005	0.64	-0.2
1,466,908	-		MMJJ_RS08005	0.65	-1.6
1,466,927	+		MMJJ_RS08005	0.67	+0.8
1,466,934	+		MMJJ_RS08005	0.68	+0.1
1,466,998	-		MMJJ_RS08005	0.77	-0.3
1,467,002	+		MMJJ_RS08005	0.78	-0.9
1,467,002	+		MMJJ_RS08005	0.78	-1.7
1,467,023	+		MMJJ_RS08005	0.81	+1.1
1,467,082	-		MMJJ_RS08005	0.89	-0.5
1,467,121	+				-1.1
1,467,139	-				+0.9
1,467,140	+				+0.9
1,467,288	-				-0.8
1,467,333	-		MMJJ_RS08010	0.14	-2.7
1,467,440	+		MMJJ_RS08010	0.26	-1.7
1,467,478	-		MMJJ_RS08010	0.31	-2.0
1,467,478	-		MMJJ_RS08010	0.31	-2.2
1,467,492	-		MMJJ_RS08010	0.32	+1.2
1,467,502	-		MMJJ_RS08010	0.33	-4.0
1,467,571	-		MMJJ_RS08010	0.41	-2.8
1,467,573	-		MMJJ_RS08010	0.41	-2.7
1,467,591	-		MMJJ_RS08010	0.43	-2.2
1,467,592	+		MMJJ_RS08010	0.43	-3.7
1,467,592	+		MMJJ_RS08010	0.43	-2.4
1,467,621	-		MMJJ_RS08010	0.47	-3.2
1,467,675	+		MMJJ_RS08010	0.53	-1.2
1,467,675	+		MMJJ_RS08010	0.53	+0.3
1,467,810	-		MMJJ_RS08010	0.68	-1.3
1,467,837	-		MMJJ_RS08010	0.71	-2.8
1,467,838	+		MMJJ_RS08010	0.71	-2.3
1,467,838	+		MMJJ_RS08010	0.71	-2.7
1,467,841	-		MMJJ_RS08010	0.71	-1.0
1,467,843	-		MMJJ_RS08010	0.71	-2.4
1,467,843	-		MMJJ_RS08010	0.71	-2.5
1,467,844	+		MMJJ_RS08010	0.72	-2.3
1,467,951	-		MMJJ_RS08010	0.84	-1.3
1,468,039	+				-1.2
1,468,138	+				+1.0
1,468,205	+		MMJJ_RS08015	0.20	+0.2
1,468,243	-		MMJJ_RS08015	0.28	+0.2
1,468,243	-		MMJJ_RS08015	0.28	-0.6
1,468,244	+		MMJJ_RS08015	0.28	-0.1
1,468,307	-		MMJJ_RS08015	0.42	-1.0
1,468,308	+		MMJJ_RS08015	0.42	-0.2
1,468,308	+		MMJJ_RS08015	0.42	-1.0
1,468,308	+		MMJJ_RS08015	0.42	+1.1
1,468,406	-		MMJJ_RS08015	0.64	+0.5
1,468,406	-		MMJJ_RS08015	0.64	+0.3
1,468,407	+		MMJJ_RS08015	0.64	+0.0
1,468,407	+		MMJJ_RS08015	0.64	-0.2
1,468,423	-		MMJJ_RS08015	0.68	+0.6
1,468,424	+		MMJJ_RS08015	0.68	+1.2
1,468,424	+		MMJJ_RS08015	0.68	+0.5
1,468,457	+		MMJJ_RS08015	0.76	+0.1
1,468,469	+		MMJJ_RS08015	0.78	-2.8
1,468,480	-		MMJJ_RS08015	0.81	-1.4
1,468,480	-		MMJJ_RS08015	0.81	+0.2
1,468,510	-		MMJJ_RS08015	0.87	+0.8
1,468,566	-				-0.1
1,468,601	+				+0.4
1,468,611	+				+0.3
1,468,615	+				-2.3
1,468,636	-				-1.3
1,468,702	-		MMJJ_RS08020	0.10	-3.8
1,468,703	+		MMJJ_RS08020	0.10	-2.9
1,468,703	+		MMJJ_RS08020	0.10	-3.6
1,468,718	+		MMJJ_RS08020	0.12	-4.4
1,468,718	+		MMJJ_RS08020	0.12	-2.0
1,468,719	-		MMJJ_RS08020	0.12	-0.1
1,468,719	-		MMJJ_RS08020	0.12	-2.3
1,468,719	-		MMJJ_RS08020	0.12	-2.4
1,468,719	-		MMJJ_RS08020	0.12	-3.5
1,468,720	+		MMJJ_RS08020	0.12	-2.3
1,468,720	+		MMJJ_RS08020	0.12	-3.1
1,468,734	-		MMJJ_RS08020	0.13	-2.3
1,468,734	-		MMJJ_RS08020	0.13	-2.8
1,469,025	-		MMJJ_RS08020	0.41	-2.6
1,469,026	+		MMJJ_RS08020	0.41	-1.8
1,469,030	-		MMJJ_RS08020	0.41	-1.8
1,469,031	+		MMJJ_RS08020	0.41	-4.1
1,469,031	+		MMJJ_RS08020	0.41	-2.0
1,469,031	+		MMJJ_RS08020	0.41	-2.2
1,469,054	-		MMJJ_RS08020	0.43	-3.8
1,469,054	-		MMJJ_RS08020	0.43	-3.8
1,469,058	-		MMJJ_RS08020	0.44	-2.1
1,469,058	-		MMJJ_RS08020	0.44	-3.8
1,469,094	+		MMJJ_RS08020	0.47	-2.5