Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04050

Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04045 and MMJJ_RS04050 overlap by 8 nucleotidesMMJJ_RS04050 and MMJJ_RS04055 are separated by 12 nucleotidesMMJJ_RS04055 and MMJJ_RS04060 are separated by 9 nucleotides MMJJ_RS04045: MMJJ_RS04045 - DHH family phosphoesterase, at 752,036 to 753,052 _RS04045 MMJJ_RS04050: MMJJ_RS04050 - dihydroneopterin aldolase family protein, at 753,045 to 753,419 _RS04050 MMJJ_RS04055: MMJJ_RS04055 - hypothetical protein, at 753,432 to 753,701 _RS04055 MMJJ_RS04060: MMJJ_RS04060 - DUF2341 domain-containing protein, at 753,711 to 755,501 _RS04060 Position (kb) 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1at 752.087 kb on + strandat 752.088 kb on - strandat 752.089 kb on + strandat 752.094 kb on - strandat 752.301 kb on - strand, within MMJJ_RS04045at 752.320 kb on + strand, within MMJJ_RS04045at 752.350 kb on + strand, within MMJJ_RS04045at 752.373 kb on - strand, within MMJJ_RS04045at 752.373 kb on - strand, within MMJJ_RS04045at 752.398 kb on - strand, within MMJJ_RS04045at 752.401 kb on + strand, within MMJJ_RS04045at 752.418 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.420 kb on + strand, within MMJJ_RS04045at 752.458 kb on + strand, within MMJJ_RS04045at 752.524 kb on - strand, within MMJJ_RS04045at 752.532 kb on + strand, within MMJJ_RS04045at 752.573 kb on + strand, within MMJJ_RS04045at 752.601 kb on - strand, within MMJJ_RS04045at 752.602 kb on + strand, within MMJJ_RS04045at 752.617 kb on + strand, within MMJJ_RS04045at 752.628 kb on - strand, within MMJJ_RS04045at 752.668 kb on + strand, within MMJJ_RS04045at 752.692 kb on + strand, within MMJJ_RS04045at 752.708 kb on - strand, within MMJJ_RS04045at 752.708 kb on - strand, within MMJJ_RS04045at 752.709 kb on + strand, within MMJJ_RS04045at 752.709 kb on + strand, within MMJJ_RS04045at 752.713 kb on - strand, within MMJJ_RS04045at 752.721 kb on - strand, within MMJJ_RS04045at 752.767 kb on + strand, within MMJJ_RS04045at 752.824 kb on - strand, within MMJJ_RS04045at 752.829 kb on - strand, within MMJJ_RS04045at 752.829 kb on - strand, within MMJJ_RS04045at 752.944 kb on + strand, within MMJJ_RS04045at 752.971 kb on - strandat 753.031 kb on + strandat 753.101 kb on + strand, within MMJJ_RS04050at 753.292 kb on + strand, within MMJJ_RS04050at 753.367 kb on - strand, within MMJJ_RS04050at 753.403 kb on + strandat 753.530 kb on - strand, within MMJJ_RS04055at 753.541 kb on - strand, within MMJJ_RS04055at 753.542 kb on + strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.544 kb on - strand, within MMJJ_RS04055at 753.584 kb on - strand, within MMJJ_RS04055at 753.712 kb on - strandat 753.713 kb on + strandat 753.746 kb on + strandat 753.796 kb on - strandat 753.814 kb on - strandat 753.817 kb on - strandat 753.817 kb on - strandat 753.818 kb on + strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.826 kb on - strandat 753.827 kb on + strandat 753.827 kb on + strandat 753.873 kb on - strandat 753.873 kb on - strandat 753.874 kb on + strandat 753.874 kb on + strandat 753.874 kb on + strandat 753.875 kb on - strandat 753.875 kb on - strandat 753.876 kb on + strandat 753.877 kb on - strandat 753.877 kb on - strandat 753.889 kb on + strandat 753.911 kb on - strand, within MMJJ_RS04060at 753.912 kb on + strand, within MMJJ_RS04060at 753.937 kb on - strand, within MMJJ_RS04060at 753.938 kb on + strand, within MMJJ_RS04060at 753.938 kb on + strand, within MMJJ_RS04060at 753.945 kb on + strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.964 kb on - strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.965 kb on + strand, within MMJJ_RS04060at 753.973 kb on - strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.974 kb on + strand, within MMJJ_RS04060at 753.981 kb on - strand, within MMJJ_RS04060at 753.982 kb on + strand, within MMJJ_RS04060at 754.015 kb on - strand, within MMJJ_RS04060at 754.074 kb on - strand, within MMJJ_RS04060at 754.075 kb on + strand, within MMJJ_RS04060at 754.075 kb on + strand, within MMJJ_RS04060at 754.075 kb on + strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.076 kb on - strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.077 kb on + strand, within MMJJ_RS04060at 754.078 kb on - strand, within MMJJ_RS04060at 754.078 kb on - strand, within MMJJ_RS04060at 754.078 kb on - strand, within MMJJ_RS04060at 754.079 kb on + strand, within MMJJ_RS04060at 754.079 kb on + strand, within MMJJ_RS04060at 754.079 kb on + strand, within MMJJ_RS04060at 754.079 kb on + strand, within MMJJ_RS04060at 754.092 kb on + strand, within MMJJ_RS04060at 754.092 kb on + strand, within MMJJ_RS04060at 754.096 kb on - strand, within MMJJ_RS04060at 754.097 kb on + strand, within MMJJ_RS04060at 754.119 kb on - strand, within MMJJ_RS04060at 754.119 kb on - strand, within MMJJ_RS04060at 754.120 kb on + strand, within MMJJ_RS04060at 754.120 kb on + strand, within MMJJ_RS04060at 754.139 kb on - strand, within MMJJ_RS04060at 754.139 kb on - strand, within MMJJ_RS04060at 754.139 kb on - strand, within MMJJ_RS04060at 754.139 kb on - strand, within MMJJ_RS04060at 754.139 kb on - strand, within MMJJ_RS04060at 754.140 kb on + strand, within MMJJ_RS04060at 754.140 kb on + strand, within MMJJ_RS04060at 754.140 kb on + strand, within MMJJ_RS04060at 754.140 kb on + strand, within MMJJ_RS04060at 754.141 kb on - strand, within MMJJ_RS04060at 754.141 kb on - strand, within MMJJ_RS04060at 754.141 kb on - strand, within MMJJ_RS04060at 754.141 kb on - strand, within MMJJ_RS04060at 754.142 kb on + strand, within MMJJ_RS04060at 754.186 kb on - strand, within MMJJ_RS04060at 754.186 kb on - strand, within MMJJ_RS04060at 754.187 kb on + strand, within MMJJ_RS04060at 754.187 kb on + strand, within MMJJ_RS04060at 754.187 kb on + strand, within MMJJ_RS04060at 754.187 kb on + strand, within MMJJ_RS04060at 754.187 kb on + strand, within MMJJ_RS04060at 754.197 kb on - strand, within MMJJ_RS04060at 754.198 kb on + strand, within MMJJ_RS04060at 754.203 kb on + strand, within MMJJ_RS04060at 754.205 kb on + strand, within MMJJ_RS04060at 754.205 kb on - strand, within MMJJ_RS04060at 754.205 kb on - strand, within MMJJ_RS04060at 754.205 kb on - strand, within MMJJ_RS04060at 754.205 kb on - strand, within MMJJ_RS04060at 754.206 kb on + strand, within MMJJ_RS04060at 754.207 kb on - strand, within MMJJ_RS04060at 754.269 kb on - strand, within MMJJ_RS04060at 754.270 kb on + strand, within MMJJ_RS04060at 754.270 kb on + strand, within MMJJ_RS04060at 754.290 kb on + strand, within MMJJ_RS04060at 754.293 kb on - strand, within MMJJ_RS04060at 754.293 kb on - strand, within MMJJ_RS04060at 754.294 kb on + strand, within MMJJ_RS04060at 754.294 kb on + strand, within MMJJ_RS04060at 754.294 kb on + strand, within MMJJ_RS04060at 754.305 kb on - strand, within MMJJ_RS04060at 754.327 kb on - strand, within MMJJ_RS04060at 754.328 kb on + strand, within MMJJ_RS04060at 754.350 kb on + strand, within MMJJ_RS04060at 754.350 kb on + strand, within MMJJ_RS04060at 754.363 kb on - strand, within MMJJ_RS04060at 754.364 kb on + strand, within MMJJ_RS04060at 754.364 kb on + strand, within MMJJ_RS04060at 754.364 kb on + strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strandat 754.394 kb on - strand, within MMJJ_RS04060at 754.394 kb on - strand, within MMJJ_RS04060at 754.395 kb on + strand, within MMJJ_RS04060at 754.395 kb on + strand, within MMJJ_RS04060at 754.395 kb on + strand, within MMJJ_RS04060at 754.395 kb on + strand, within MMJJ_RS04060at 754.395 kb on + strand, within MMJJ_RS04060at 754.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos 10mM Ammonium chloride
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752,087 + -0.6
752,088 - -1.7
752,089 + -1.4
752,094 - -1.3
752,301 - MMJJ_RS04045 0.26 -0.0
752,320 + MMJJ_RS04045 0.28 -0.3
752,350 + MMJJ_RS04045 0.31 -2.1
752,373 - MMJJ_RS04045 0.33 -0.5
752,373 - MMJJ_RS04045 0.33 -0.3
752,398 - MMJJ_RS04045 0.36 -0.6
752,401 + MMJJ_RS04045 0.36 -0.6
752,418 + MMJJ_RS04045 0.38 -1.6
752,420 + MMJJ_RS04045 0.38 -0.3
752,420 + MMJJ_RS04045 0.38 -1.1
752,420 + MMJJ_RS04045 0.38 -2.3
752,458 + MMJJ_RS04045 0.41 -0.0
752,524 - MMJJ_RS04045 0.48 -0.7
752,532 + MMJJ_RS04045 0.49 -0.7
752,573 + MMJJ_RS04045 0.53 -0.9
752,601 - MMJJ_RS04045 0.56 -1.5
752,602 + MMJJ_RS04045 0.56 +0.0
752,617 + MMJJ_RS04045 0.57 -0.4
752,628 - MMJJ_RS04045 0.58 -1.4
752,668 + MMJJ_RS04045 0.62 -0.3
752,692 + MMJJ_RS04045 0.65 -1.0
752,708 - MMJJ_RS04045 0.66 +0.7
752,708 - MMJJ_RS04045 0.66 +0.2
752,709 + MMJJ_RS04045 0.66 +0.6
752,709 + MMJJ_RS04045 0.66 -1.6
752,713 - MMJJ_RS04045 0.67 -0.9
752,721 - MMJJ_RS04045 0.67 -0.9
752,767 + MMJJ_RS04045 0.72 -0.4
752,824 - MMJJ_RS04045 0.77 -0.8
752,829 - MMJJ_RS04045 0.78 -0.7
752,829 - MMJJ_RS04045 0.78 -0.9
752,944 + MMJJ_RS04045 0.89 -0.2
752,971 - -1.6
753,031 + +0.3
753,101 + MMJJ_RS04050 0.15 -3.0
753,292 + MMJJ_RS04050 0.66 -2.6
753,367 - MMJJ_RS04050 0.86 -2.6
753,403 + -2.6
753,530 - MMJJ_RS04055 0.36 +1.2
753,541 - MMJJ_RS04055 0.40 +0.0
753,542 + MMJJ_RS04055 0.41 -0.3
753,544 - MMJJ_RS04055 0.41 +0.1
753,544 - MMJJ_RS04055 0.41 +1.0
753,544 - MMJJ_RS04055 0.41 +0.1
753,584 - MMJJ_RS04055 0.56 -0.1
753,712 - -0.5
753,713 + -0.7
753,746 + +0.5
753,796 - +0.4
753,814 - +0.1
753,817 - -0.4
753,817 - -0.3
753,818 + +0.6
753,826 - -1.2
753,826 - +1.2
753,826 - +0.3
753,826 - +0.0
753,827 + -0.6
753,827 + +0.6
753,873 - -1.3
753,873 - +0.0
753,874 + -0.1
753,874 + -0.6
753,874 + -1.0
753,875 - -1.5
753,875 - -0.9
753,876 + -1.2
753,877 - -0.3
753,877 - +0.9
753,889 + +0.1
753,911 - MMJJ_RS04060 0.11 +0.3
753,912 + MMJJ_RS04060 0.11 +1.1
753,937 - MMJJ_RS04060 0.13 +0.1
753,938 + MMJJ_RS04060 0.13 -1.0
753,938 + MMJJ_RS04060 0.13 +0.2
753,945 + MMJJ_RS04060 0.13 -1.4
753,964 - MMJJ_RS04060 0.14 -0.1
753,964 - MMJJ_RS04060 0.14 -0.3
753,964 - MMJJ_RS04060 0.14 -1.0
753,964 - MMJJ_RS04060 0.14 +0.8
753,964 - MMJJ_RS04060 0.14 -1.1
753,964 - MMJJ_RS04060 0.14 -0.1
753,965 + MMJJ_RS04060 0.14 -0.3
753,965 + MMJJ_RS04060 0.14 +0.5
753,965 + MMJJ_RS04060 0.14 +0.1
753,973 - MMJJ_RS04060 0.15 -0.4
753,974 + MMJJ_RS04060 0.15 -0.2
753,974 + MMJJ_RS04060 0.15 -0.7
753,974 + MMJJ_RS04060 0.15 +0.3
753,981 - MMJJ_RS04060 0.15 +0.4
753,982 + MMJJ_RS04060 0.15 -0.5
754,015 - MMJJ_RS04060 0.17 +0.3
754,074 - MMJJ_RS04060 0.20 -0.4
754,075 + MMJJ_RS04060 0.20 +0.1
754,075 + MMJJ_RS04060 0.20 +0.6
754,075 + MMJJ_RS04060 0.20 +0.2
754,076 - MMJJ_RS04060 0.20 -1.1
754,076 - MMJJ_RS04060 0.20 +0.5
754,076 - MMJJ_RS04060 0.20 +0.5
754,076 - MMJJ_RS04060 0.20 -0.2
754,076 - MMJJ_RS04060 0.20 -2.7
754,076 - MMJJ_RS04060 0.20 +0.1
754,076 - MMJJ_RS04060 0.20 -0.8
754,076 - MMJJ_RS04060 0.20 +0.5
754,076 - MMJJ_RS04060 0.20 +0.3
754,076 - MMJJ_RS04060 0.20 -1.1
754,076 - MMJJ_RS04060 0.20 -0.1
754,077 + MMJJ_RS04060 0.20 -0.0
754,077 + MMJJ_RS04060 0.20 -0.3
754,077 + MMJJ_RS04060 0.20 -0.2
754,077 + MMJJ_RS04060 0.20 -0.3
754,077 + MMJJ_RS04060 0.20 -0.1
754,077 + MMJJ_RS04060 0.20 -0.6
754,077 + MMJJ_RS04060 0.20 +0.9
754,078 - MMJJ_RS04060 0.20 +0.3
754,078 - MMJJ_RS04060 0.20 +0.7
754,078 - MMJJ_RS04060 0.20 +0.5
754,079 + MMJJ_RS04060 0.21 +1.2
754,079 + MMJJ_RS04060 0.21 -0.4
754,079 + MMJJ_RS04060 0.21 -0.2
754,079 + MMJJ_RS04060 0.21 +1.4
754,092 + MMJJ_RS04060 0.21 +0.8
754,092 + MMJJ_RS04060 0.21 +0.6
754,096 - MMJJ_RS04060 0.21 +0.7
754,097 + MMJJ_RS04060 0.22 -0.5
754,119 - MMJJ_RS04060 0.23 +0.0
754,119 - MMJJ_RS04060 0.23 +0.7
754,120 + MMJJ_RS04060 0.23 -0.9
754,120 + MMJJ_RS04060 0.23 +0.4
754,139 - MMJJ_RS04060 0.24 +0.6
754,139 - MMJJ_RS04060 0.24 +0.4
754,139 - MMJJ_RS04060 0.24 -1.1
754,139 - MMJJ_RS04060 0.24 +0.1
754,139 - MMJJ_RS04060 0.24 +0.0
754,140 + MMJJ_RS04060 0.24 +0.5
754,140 + MMJJ_RS04060 0.24 +0.5
754,140 + MMJJ_RS04060 0.24 -0.8
754,140 + MMJJ_RS04060 0.24 -0.1
754,141 - MMJJ_RS04060 0.24 +1.0
754,141 - MMJJ_RS04060 0.24 -0.6
754,141 - MMJJ_RS04060 0.24 -1.3
754,141 - MMJJ_RS04060 0.24 +0.7
754,142 + MMJJ_RS04060 0.24 -0.8
754,186 - MMJJ_RS04060 0.27 -0.2
754,186 - MMJJ_RS04060 0.27 +0.3
754,187 + MMJJ_RS04060 0.27 -0.6
754,187 + MMJJ_RS04060 0.27 -0.2
754,187 + MMJJ_RS04060 0.27 +0.1
754,187 + MMJJ_RS04060 0.27 +0.9
754,187 + MMJJ_RS04060 0.27 +0.5
754,197 - MMJJ_RS04060 0.27 +0.8
754,198 + MMJJ_RS04060 0.27 +0.1
754,203 + MMJJ_RS04060 0.27 +0.2
754,205 + MMJJ_RS04060 0.28 -1.0
754,205 - MMJJ_RS04060 0.28 -1.2
754,205 - MMJJ_RS04060 0.28 -0.2
754,205 - MMJJ_RS04060 0.28 -1.1
754,205 - MMJJ_RS04060 0.28 +0.1
754,206 + MMJJ_RS04060 0.28 +0.8
754,207 - MMJJ_RS04060 0.28 -1.6
754,269 - MMJJ_RS04060 0.31 -0.3
754,270 + MMJJ_RS04060 0.31 +0.5
754,270 + MMJJ_RS04060 0.31 +0.3
754,290 + MMJJ_RS04060 0.32 +0.1
754,293 - MMJJ_RS04060 0.32 -1.3
754,293 - MMJJ_RS04060 0.32 +1.0
754,294 + MMJJ_RS04060 0.33 -0.2
754,294 + MMJJ_RS04060 0.33 -1.9
754,294 + MMJJ_RS04060 0.33 +0.7
754,305 - MMJJ_RS04060 0.33 -0.6
754,327 - MMJJ_RS04060 0.34 +0.8
754,328 + MMJJ_RS04060 0.34 -0.4
754,350 + MMJJ_RS04060 0.36 +0.6
754,350 + MMJJ_RS04060 0.36 +0.2
754,363 - MMJJ_RS04060 0.36 +0.1
754,364 + MMJJ_RS04060 0.36 +0.2
754,364 + MMJJ_RS04060 0.36 +0.2
754,364 + MMJJ_RS04060 0.36 -0.9
754,394 - MMJJ_RS04060 0.38 -0.3
754,394 - MMJJ_RS04060 0.38 -0.7
754,394 - MMJJ_RS04060 0.38 +0.3
754,394 - MMJJ_RS04060 0.38 -2.4
754,394 - MMJJ_RS04060 0.38 +0.2
754,394 - -1.0
754,394 - MMJJ_RS04060 0.38 -0.3
754,394 - MMJJ_RS04060 0.38 -0.6
754,395 + MMJJ_RS04060 0.38 +1.5
754,395 + MMJJ_RS04060 0.38 +0.3
754,395 + MMJJ_RS04060 0.38 -0.2
754,395 + MMJJ_RS04060 0.38 +0.6
754,395 + MMJJ_RS04060 0.38 -0.7
754,395 + -1.0

Or see this region's nucleotide sequence