Experiment: H2 N-free with 2g/L casaminos 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00895 and MMJJ_RS00900 are separated by 152 nucleotides MMJJ_RS00900 and MMJJ_RS00905 are separated by 283 nucleotides
MMJJ_RS00895: MMJJ_RS00895 - coenzyme F420 hydrogenase subunit beta, at 171,320 to 172,168
_RS00895
MMJJ_RS00900: MMJJ_RS00900 - PC4/YdbC family ssDNA-binding protein, at 172,321 to 172,542
_RS00900
MMJJ_RS00905: MMJJ_RS00905 - right-handed parallel beta-helix repeat-containing protein, at 172,826 to 174,760
_RS00905
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.338 kb on - strand at 171.340 kb on - strand at 171.340 kb on - strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.354 kb on + strand at 171.371 kb on + strand at 171.378 kb on - strand at 171.419 kb on - strand, within MMJJ_RS00895 at 171.419 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.426 kb on + strand, within MMJJ_RS00895 at 171.447 kb on - strand, within MMJJ_RS00895 at 171.485 kb on + strand, within MMJJ_RS00895 at 171.541 kb on - strand, within MMJJ_RS00895 at 171.542 kb on + strand, within MMJJ_RS00895 at 171.545 kb on - strand, within MMJJ_RS00895 at 171.547 kb on - strand, within MMJJ_RS00895 at 171.548 kb on + strand, within MMJJ_RS00895 at 171.564 kb on - strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.574 kb on + strand, within MMJJ_RS00895 at 171.586 kb on + strand, within MMJJ_RS00895 at 171.646 kb on - strand, within MMJJ_RS00895 at 171.647 kb on + strand, within MMJJ_RS00895 at 171.654 kb on - strand, within MMJJ_RS00895 at 171.677 kb on + strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.683 kb on + strand, within MMJJ_RS00895 at 171.714 kb on - strand, within MMJJ_RS00895 at 171.760 kb on + strand, within MMJJ_RS00895 at 171.849 kb on - strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.934 kb on - strand, within MMJJ_RS00895 at 171.935 kb on + strand, within MMJJ_RS00895 at 171.985 kb on - strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.062 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.163 kb on - strand at 172.178 kb on - strand at 172.199 kb on - strand at 172.199 kb on - strand at 172.205 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.212 kb on - strand at 172.264 kb on - strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.293 kb on - strand at 172.294 kb on + strand at 172.298 kb on + strand at 172.298 kb on + strand at 172.343 kb on - strand at 172.343 kb on - strand at 172.362 kb on + strand, within MMJJ_RS00900 at 172.366 kb on - strand, within MMJJ_RS00900 at 172.398 kb on + strand, within MMJJ_RS00900 at 172.432 kb on - strand, within MMJJ_RS00900 at 172.437 kb on - strand, within MMJJ_RS00900 at 172.438 kb on + strand, within MMJJ_RS00900 at 172.439 kb on - strand, within MMJJ_RS00900 at 172.439 kb on - strand, within MMJJ_RS00900 at 172.487 kb on - strand, within MMJJ_RS00900 at 172.540 kb on - strand at 172.541 kb on + strand at 172.562 kb on + strand at 172.570 kb on - strand at 172.605 kb on - strand at 172.611 kb on - strand at 172.615 kb on + strand at 172.615 kb on + strand at 172.648 kb on - strand at 172.649 kb on + strand at 172.654 kb on + strand at 172.716 kb on - strand at 172.717 kb on + strand at 172.740 kb on - strand at 172.753 kb on - strand at 172.754 kb on + strand at 172.759 kb on - strand at 172.760 kb on + strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.777 kb on - strand at 172.801 kb on - strand at 172.801 kb on - strand at 172.803 kb on - strand at 172.804 kb on + strand at 172.804 kb on + strand at 172.804 kb on - strand at 172.836 kb on - strand at 172.837 kb on + strand at 172.837 kb on + strand at 172.839 kb on - strand at 172.839 kb on - strand at 172.840 kb on + strand at 172.840 kb on + strand at 172.840 kb on + strand at 172.849 kb on - strand at 172.849 kb on - strand at 172.849 kb on - strand at 172.885 kb on + strand at 172.890 kb on + strand at 172.909 kb on - strand at 172.913 kb on - strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.932 kb on - strand at 172.933 kb on + strand at 172.950 kb on + strand at 172.953 kb on + strand at 172.956 kb on - strand at 172.989 kb on - strand at 173.008 kb on + strand at 173.013 kb on - strand at 173.098 kb on - strand, within MMJJ_RS00905 at 173.129 kb on - strand, within MMJJ_RS00905 at 173.134 kb on - strand, within MMJJ_RS00905 at 173.173 kb on + strand, within MMJJ_RS00905 at 173.173 kb on + strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.226 kb on - strand, within MMJJ_RS00905 at 173.226 kb on - strand, within MMJJ_RS00905 at 173.227 kb on + strand, within MMJJ_RS00905 at 173.227 kb on + strand, within MMJJ_RS00905 at 173.230 kb on - strand, within MMJJ_RS00905 at 173.277 kb on - strand, within MMJJ_RS00905 at 173.277 kb on - strand, within MMJJ_RS00905 at 173.278 kb on + strand, within MMJJ_RS00905 at 173.281 kb on - strand, within MMJJ_RS00905 at 173.282 kb on + strand, within MMJJ_RS00905 at 173.285 kb on - strand, within MMJJ_RS00905 at 173.292 kb on - strand, within MMJJ_RS00905 at 173.292 kb on - strand, within MMJJ_RS00905 at 173.303 kb on + strand, within MMJJ_RS00905 at 173.330 kb on - strand, within MMJJ_RS00905 at 173.384 kb on + strand, within MMJJ_RS00905 at 173.419 kb on + strand, within MMJJ_RS00905 at 173.447 kb on - strand, within MMJJ_RS00905 at 173.491 kb on - strand, within MMJJ_RS00905 at 173.504 kb on - strand, within MMJJ_RS00905 at 173.523 kb on + strand, within MMJJ_RS00905 at 173.527 kb on + strand, within MMJJ_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2g/L casaminos 10mM Ammonium chloride remove 171,338 - +0.8 171,340 - +0.3 171,340 - +0.7 171,341 + -0.5 171,341 + +0.7 171,341 + -0.6 171,341 + -0.2 171,349 - -0.1 171,349 - +0.2 171,349 - -2.7 171,350 + -0.2 171,350 + +0.0 171,350 + -0.2 171,352 + -0.6 171,352 + -2.2 171,352 + -0.3 171,352 + +0.3 171,352 + +0.3 171,354 + -1.5 171,371 + -0.1 171,378 - +1.1 171,419 - MMJJ_RS00895 0.12 +0.2 171,419 - MMJJ_RS00895 0.12 -1.5 171,425 - MMJJ_RS00895 0.12 -0.0 171,425 - +1.0 171,425 - MMJJ_RS00895 0.12 +0.3 171,425 - MMJJ_RS00895 0.12 +0.3 171,425 - MMJJ_RS00895 0.12 +0.2 171,425 - MMJJ_RS00895 0.12 +0.5 171,426 + MMJJ_RS00895 0.12 +0.5 171,447 - MMJJ_RS00895 0.15 +0.4 171,485 + MMJJ_RS00895 0.19 +0.2 171,541 - MMJJ_RS00895 0.26 -0.9 171,542 + MMJJ_RS00895 0.26 +0.4 171,545 - MMJJ_RS00895 0.27 +0.4 171,547 - MMJJ_RS00895 0.27 -0.4 171,548 + MMJJ_RS00895 0.27 -0.1 171,564 - MMJJ_RS00895 0.29 +0.0 171,565 + MMJJ_RS00895 0.29 -1.7 171,565 + MMJJ_RS00895 0.29 -0.4 171,565 + MMJJ_RS00895 0.29 -0.2 171,574 + MMJJ_RS00895 0.30 -0.7 171,586 + MMJJ_RS00895 0.31 -1.8 171,646 - MMJJ_RS00895 0.38 +1.0 171,647 + MMJJ_RS00895 0.39 -0.2 171,654 - MMJJ_RS00895 0.39 -0.6 171,677 + MMJJ_RS00895 0.42 +0.2 171,682 - MMJJ_RS00895 0.43 +2.3 171,682 - MMJJ_RS00895 0.43 +1.0 171,683 + MMJJ_RS00895 0.43 +0.8 171,714 - MMJJ_RS00895 0.46 +0.9 171,760 + MMJJ_RS00895 0.52 -0.5 171,849 - MMJJ_RS00895 0.62 -2.1 171,850 + MMJJ_RS00895 0.62 -0.3 171,850 + MMJJ_RS00895 0.62 +0.0 171,881 - MMJJ_RS00895 0.66 -0.4 171,881 - MMJJ_RS00895 0.66 +0.4 171,882 + MMJJ_RS00895 0.66 +0.0 171,882 + MMJJ_RS00895 0.66 -1.0 171,882 + MMJJ_RS00895 0.66 -0.1 171,882 + MMJJ_RS00895 0.66 +0.8 171,903 - MMJJ_RS00895 0.69 +0.9 171,903 - MMJJ_RS00895 0.69 -2.0 171,903 - MMJJ_RS00895 0.69 +0.7 171,903 - MMJJ_RS00895 0.69 +0.1 171,903 - MMJJ_RS00895 0.69 +0.3 171,903 - MMJJ_RS00895 0.69 +0.4 171,903 - MMJJ_RS00895 0.69 +0.9 171,903 - MMJJ_RS00895 0.69 +1.0 171,903 - MMJJ_RS00895 0.69 +1.0 171,904 + MMJJ_RS00895 0.69 +0.5 171,904 + MMJJ_RS00895 0.69 +0.4 171,904 + MMJJ_RS00895 0.69 -1.1 171,904 + MMJJ_RS00895 0.69 +0.1 171,904 + MMJJ_RS00895 0.69 -0.3 171,904 + MMJJ_RS00895 0.69 +1.0 171,904 + MMJJ_RS00895 0.69 +0.8 171,907 - MMJJ_RS00895 0.69 +0.6 171,907 - MMJJ_RS00895 0.69 +0.6 171,908 + MMJJ_RS00895 0.69 +0.3 171,908 + MMJJ_RS00895 0.69 -0.8 171,914 - MMJJ_RS00895 0.70 -0.5 171,914 - MMJJ_RS00895 0.70 +0.4 171,915 + MMJJ_RS00895 0.70 -0.4 171,915 + MMJJ_RS00895 0.70 -0.1 171,934 - MMJJ_RS00895 0.72 -0.1 171,935 + MMJJ_RS00895 0.72 +0.3 171,985 - MMJJ_RS00895 0.78 -1.0 171,986 + MMJJ_RS00895 0.78 +1.1 171,986 + MMJJ_RS00895 0.78 -1.8 172,008 + MMJJ_RS00895 0.81 +0.1 172,008 + MMJJ_RS00895 0.81 -0.5 172,062 - MMJJ_RS00895 0.87 +1.2 172,080 - MMJJ_RS00895 0.90 -0.1 172,080 - MMJJ_RS00895 0.90 -0.7 172,080 - MMJJ_RS00895 0.90 +0.9 172,080 - MMJJ_RS00895 0.90 -0.8 172,080 - MMJJ_RS00895 0.90 +0.0 172,163 - -0.2 172,178 - +0.3 172,199 - -0.4 172,199 - -0.3 172,205 - -0.9 172,209 - -0.1 172,209 - -0.4 172,209 - -0.8 172,209 - -0.2 172,210 + +0.5 172,210 + +0.2 172,212 - +0.4 172,264 - +0.8 172,282 - +0.6 172,282 - -0.6 172,293 - -0.5 172,294 + +0.1 172,298 + -0.2 172,298 + -0.1 172,343 - -0.8 172,343 - +0.1 172,362 + MMJJ_RS00900 0.18 -1.8 172,366 - MMJJ_RS00900 0.20 -0.5 172,398 + MMJJ_RS00900 0.35 -0.5 172,432 - MMJJ_RS00900 0.50 -0.3 172,437 - MMJJ_RS00900 0.52 -2.1 172,438 + MMJJ_RS00900 0.53 -0.1 172,439 - MMJJ_RS00900 0.53 -0.4 172,439 - MMJJ_RS00900 0.53 -0.2 172,487 - MMJJ_RS00900 0.75 -0.9 172,540 - -2.2 172,541 + +0.2 172,562 + -0.6 172,570 - +0.8 172,605 - -0.7 172,611 - +0.4 172,615 + +0.1 172,615 + +0.5 172,648 - +0.7 172,649 + +0.3 172,654 + -1.0 172,716 - -0.2 172,717 + +0.7 172,740 - -1.1 172,753 - -0.0 172,754 + +0.3 172,759 - +0.6 172,760 + +0.3 172,761 - -0.2 172,761 - -0.3 172,761 - +0.7 172,761 - +0.5 172,777 - -0.2 172,801 - +0.0 172,801 - -1.2 172,803 - -2.4 172,804 + +0.3 172,804 + +1.0 172,804 - -0.6 172,836 - +0.5 172,837 + +1.3 172,837 + -0.1 172,839 - +0.2 172,839 - -1.3 172,840 + +0.7 172,840 + -0.8 172,840 + +0.3 172,849 - +0.7 172,849 - +0.4 172,849 - +0.5 172,885 + +0.0 172,890 + +0.3 172,909 - +0.3 172,913 - +0.3 172,914 + -0.7 172,914 + -0.3 172,914 + +0.9 172,914 + -0.4 172,932 - -0.5 172,933 + +0.2 172,950 + +0.5 172,953 + +0.6 172,956 - -0.5 172,989 - +0.2 173,008 + +0.0 173,013 - -0.4 173,098 - MMJJ_RS00905 0.14 -1.3 173,129 - MMJJ_RS00905 0.16 -1.2 173,134 - MMJJ_RS00905 0.16 -0.5 173,173 + MMJJ_RS00905 0.18 +0.5 173,173 + MMJJ_RS00905 0.18 +0.1 173,183 - MMJJ_RS00905 0.18 +1.7 173,183 - MMJJ_RS00905 0.18 -0.3 173,183 - MMJJ_RS00905 0.18 +0.1 173,183 - MMJJ_RS00905 0.18 +0.1 173,183 - MMJJ_RS00905 0.18 +0.4 173,183 - MMJJ_RS00905 0.18 +0.0 173,183 - MMJJ_RS00905 0.18 -0.3 173,183 - MMJJ_RS00905 0.18 -1.1 173,184 + MMJJ_RS00905 0.19 +2.0 173,184 + MMJJ_RS00905 0.19 -1.2 173,184 + MMJJ_RS00905 0.19 +0.6 173,187 - MMJJ_RS00905 0.19 +0.1 173,187 - MMJJ_RS00905 0.19 +0.6 173,187 - MMJJ_RS00905 0.19 +0.4 173,187 - MMJJ_RS00905 0.19 -0.5 173,187 - MMJJ_RS00905 0.19 -0.0 173,188 + MMJJ_RS00905 0.19 +0.6 173,188 + MMJJ_RS00905 0.19 +0.6 173,188 + MMJJ_RS00905 0.19 -0.2 173,188 + MMJJ_RS00905 0.19 -1.2 173,188 + MMJJ_RS00905 0.19 -0.6 173,188 + MMJJ_RS00905 0.19 +0.2 173,188 + MMJJ_RS00905 0.19 +0.4 173,188 + MMJJ_RS00905 0.19 +0.2 173,188 + MMJJ_RS00905 0.19 +0.5 173,226 - MMJJ_RS00905 0.21 +1.2 173,226 - MMJJ_RS00905 0.21 +1.0 173,227 + MMJJ_RS00905 0.21 +1.0 173,227 + MMJJ_RS00905 0.21 +0.0 173,230 - MMJJ_RS00905 0.21 -0.7 173,277 - MMJJ_RS00905 0.23 +0.5 173,277 - MMJJ_RS00905 0.23 +0.0 173,278 + MMJJ_RS00905 0.23 -0.7 173,281 - MMJJ_RS00905 0.24 -0.2 173,282 + MMJJ_RS00905 0.24 -0.5 173,285 - MMJJ_RS00905 0.24 -0.3 173,292 - MMJJ_RS00905 0.24 +0.2 173,292 - MMJJ_RS00905 0.24 +0.5 173,303 + MMJJ_RS00905 0.25 -0.9 173,330 - MMJJ_RS00905 0.26 +1.3 173,384 + MMJJ_RS00905 0.29 +0.2 173,419 + MMJJ_RS00905 0.31 +0.8 173,447 - MMJJ_RS00905 0.32 -1.0 173,491 - MMJJ_RS00905 0.34 -0.0 173,504 - MMJJ_RS00905 0.35 +0.1 173,523 + MMJJ_RS00905 0.36 -1.3 173,527 + MMJJ_RS00905 0.36 -0.5
Or see this region's nucleotide sequence