Strain Fitness in Pantoea sp. MT58 around IAI47_09805

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
2,072,444	+				-1.0
2,072,444	+				-0.5
2,072,444	+				-0.8
2,072,444	+				+0.0
2,072,444	+				-1.2
2,072,444	+				+0.3
2,072,444	+				-0.9
2,072,445	-				-0.2
2,072,445	-				+0.2
2,072,445	-				-1.4
2,072,445	-				+0.9
2,072,445	-				+1.1
2,072,445	-				-0.3
2,072,445	-				+2.3
2,072,445	-				+0.5
2,072,450	-				+0.8
2,072,450	-				-1.5
2,072,450	-				-0.1
2,072,463	+				-0.5
2,072,463	+				+0.1
2,072,463	+				-0.3
2,072,463	+				-0.2
2,072,463	+				+3.0
2,072,464	-				-0.9
2,072,464	-				-0.1
2,072,464	-				+0.7
2,072,464	-				+1.2
2,072,466	+				-1.7
2,072,466	+				+0.2
2,072,466	+				+1.0
2,072,466	+				+1.1
2,072,466	+				-0.6
2,072,466	+				-0.8
2,072,466	+				-0.5
2,072,467	-				+1.6
2,072,467	-				-0.3
2,072,467	-				-0.7
2,072,467	-				-1.2
2,072,467	-				+0.9
2,072,468	+				-1.1
2,072,468	+				+0.5
2,072,468	+				-0.1
2,072,468	+				-0.0
2,072,469	-				+1.0
2,072,469	-				+2.1
2,072,469	-				-1.0
2,072,469	-				+0.8
2,072,469	-				+1.5
2,072,469	-				-0.6
2,072,469	-				+0.3
2,072,539	+		IAI47_09795	0.19	-1.2
2,072,540	-		IAI47_09795	0.19	-1.4
2,072,540	-		IAI47_09795	0.19	-0.5
2,072,552	+		IAI47_09795	0.23	+0.5
2,072,553	-		IAI47_09795	0.23	-0.6
2,072,553	-		IAI47_09795	0.23	+0.9
2,072,584	+		IAI47_09795	0.33	+1.3
2,072,585	-		IAI47_09795	0.33	-0.5
2,072,585	-		IAI47_09795	0.33	-1.3
2,072,585	-		IAI47_09795	0.33	-0.6
2,072,601	-		IAI47_09795	0.38	-0.4
2,072,637	-		IAI47_09795	0.49	+0.1
2,072,637	-		IAI47_09795	0.49	-0.5
2,072,669	+		IAI47_09795	0.59	-1.6
2,072,669	+		IAI47_09795	0.59	+0.6
2,072,670	-		IAI47_09795	0.59	-0.8
2,072,670	-		IAI47_09795	0.59	-1.2
2,072,670	-		IAI47_09795	0.59	+0.3
2,072,670	-		IAI47_09795	0.59	-0.2
2,072,807	+				-0.2
2,072,808	-				-0.4
2,072,814	+				+1.8
2,072,814	+				-1.7
2,072,815	-				+0.2
2,072,815	-				-1.0
2,072,818	+				+1.8
2,072,818	+				+1.0
2,072,819	-				+1.1
2,072,865	+				+1.1
2,072,866	-				+0.4
2,072,897	+				+0.1
2,072,897	+				-1.0
2,072,897	+				-0.1
2,072,934	-				+1.1
2,072,978	+				+0.1
2,073,005	-				+1.2
2,073,005	-				+0.6
2,073,007	+				+0.5
2,073,007	+				-1.2
2,073,007	+				+0.1
2,073,007	+				-0.4
2,073,008	-				-1.7
2,073,008	-				-0.4
2,073,009	+				-1.9
2,073,009	+				+0.1
2,073,009	+				-0.1
2,073,010	-				+0.1
2,073,010	-				+0.4
2,073,053	-				+0.8
2,073,068	+				+0.8
2,073,068	+				-1.6
2,073,069	-				-3.1
2,073,069	-				-2.4
2,073,080	+				-0.2
2,073,080	+				+3.4
2,073,081	-				-0.8
2,073,081	-				-2.2
2,073,101	+				+0.3
2,073,101	+				+1.5
2,073,101	+				-0.2
2,073,102	-				+0.5
2,073,146	-		IAI47_09800	0.22	+1.2
2,073,146	-		IAI47_09800	0.22	-2.0
2,073,146	-		IAI47_09800	0.22	+0.2
2,073,151	+		IAI47_09800	0.23	+1.1
2,073,179	-		IAI47_09800	0.32	-1.1
2,073,252	+		IAI47_09800	0.54	+0.4
2,073,252	+		IAI47_09800	0.54	+0.9
2,073,253	-		IAI47_09800	0.54	+1.1
2,073,253	-		IAI47_09800	0.54	-0.2
2,073,261	+		IAI47_09800	0.57	+0.9
2,073,273	+		IAI47_09800	0.61	+0.7
2,073,273	+		IAI47_09800	0.61	-0.4
2,073,273	+		IAI47_09800	0.61	+1.1
2,073,273	+		IAI47_09800	0.61	+0.0
2,073,274	-		IAI47_09800	0.61	+0.2
2,073,274	-		IAI47_09800	0.61	+1.1
2,073,274	-		IAI47_09800	0.61	+2.5
2,073,274	-		IAI47_09800	0.61	+0.4
2,073,274	-		IAI47_09800	0.61	-0.5
2,073,304	+		IAI47_09800	0.70	-0.0
2,073,305	-		IAI47_09800	0.70	-0.5
2,073,434	+				-1.5
2,073,435	-				+0.4
2,073,435	-				+0.2
2,073,435	-				-0.3
2,073,441	+				-1.9
2,073,442	-				-0.2
2,073,442	-				+0.1
2,073,510	+		IAI47_09805	0.10	-0.2
2,073,510	+		IAI47_09805	0.10	-1.7
2,073,510	+		IAI47_09805	0.10	-2.1
2,073,511	-		IAI47_09805	0.10	-1.7
2,073,511	-		IAI47_09805	0.10	-1.2
2,073,511	-		IAI47_09805	0.10	-3.1
2,073,511	-		IAI47_09805	0.10	-1.2
2,073,559	+		IAI47_09805	0.17	-1.8
2,073,578	+		IAI47_09805	0.19	+0.2
2,073,579	-		IAI47_09805	0.20	-3.8
2,073,579	-		IAI47_09805	0.20	-2.6
2,073,579	-		IAI47_09805	0.20	+1.1
2,073,579	-		IAI47_09805	0.20	-3.3
2,073,579	-		IAI47_09805	0.20	-2.6
2,073,579	-		IAI47_09805	0.20	-3.9
2,073,579	-		IAI47_09805	0.20	-4.2
2,073,655	+		IAI47_09805	0.30	+0.5
2,073,655	+		IAI47_09805	0.30	+0.5
2,073,655	+		IAI47_09805	0.30	-2.5
2,073,655	+		IAI47_09805	0.30	-2.7
2,073,655	+		IAI47_09805	0.30	-1.2
2,073,655	+		IAI47_09805	0.30	-2.7
2,073,655	+		IAI47_09805	0.30	-1.7
2,073,655	+		IAI47_09805	0.30	-3.2
2,073,655	+		IAI47_09805	0.30	-3.7
2,073,656	-		IAI47_09805	0.30	-1.2
2,073,656	-		IAI47_09805	0.30	-2.1
2,073,656	-		IAI47_09805	0.30	-2.4
2,073,656	-		IAI47_09805	0.30	-2.9
2,073,656	-		IAI47_09805	0.30	-2.1
2,073,656	-		IAI47_09805	0.30	-3.2
2,073,658	-		IAI47_09805	0.30	-3.9
2,073,658	-		IAI47_09805	0.30	-1.5
2,073,678	+		IAI47_09805	0.33	-3.5
2,073,679	-		IAI47_09805	0.33	-2.8
2,073,679	-		IAI47_09805	0.33	-2.7
2,073,702	+		IAI47_09805	0.36	-2.1
2,073,703	-		IAI47_09805	0.36	-3.5
2,073,740	+		IAI47_09805	0.41	-0.2
2,073,740	+		IAI47_09805	0.41	-4.1
2,073,740	+		IAI47_09805	0.41	-1.0
2,073,740	+		IAI47_09805	0.41	-2.4
2,073,740	+		IAI47_09805	0.41	-3.2
2,073,740	+		IAI47_09805	0.41	-1.5
2,073,740	+		IAI47_09805	0.41	-0.9
2,073,741	-		IAI47_09805	0.41	-3.8
2,073,741	-		IAI47_09805	0.41	-1.7
2,073,741	-		IAI47_09805	0.41	-1.9
2,073,741	-		IAI47_09805	0.41	-2.5
2,073,741	-		IAI47_09805	0.41	-1.8
2,073,741	-		IAI47_09805	0.41	-1.5
2,073,741	-		IAI47_09805	0.41	-3.4
2,073,758	+		IAI47_09805	0.44	-0.5
2,073,758	+		IAI47_09805	0.44	-0.1
2,073,759	-		IAI47_09805	0.44	-4.3
2,073,769	-		IAI47_09805	0.45	-2.5
2,073,814	+		IAI47_09805	0.51	-2.6
2,073,814	+		IAI47_09805	0.51	-0.5
2,073,814	+		IAI47_09805	0.51	-1.1
2,073,815	-		IAI47_09805	0.51	-3.0
2,073,815	-		IAI47_09805	0.51	-2.6
2,073,815	-		IAI47_09805	0.51	-1.8
2,073,815	-		IAI47_09805	0.51	-1.6
2,073,845	+		IAI47_09805	0.55	-2.2
2,073,845	+		IAI47_09805	0.55	-1.5
2,073,845	+		IAI47_09805	0.55	-2.1
2,073,846	-		IAI47_09805	0.55	-1.9
2,073,846	-		IAI47_09805	0.55	-2.5
2,073,846	-		IAI47_09805	0.55	-2.6
2,073,846	-		IAI47_09805	0.55	-2.4
2,073,949	+		IAI47_09805	0.69	-1.2
2,073,950	-		IAI47_09805	0.69	-2.2
2,073,957	+		IAI47_09805	0.70	-2.5
2,073,957	+		IAI47_09805	0.70	-2.9
2,073,958	-		IAI47_09805	0.70	-1.7
2,073,958	-		IAI47_09805	0.70	-2.1
2,073,958	-		IAI47_09805	0.70	-2.5
2,073,958	-		IAI47_09805	0.70	-1.8
2,074,032	+		IAI47_09805	0.80	-1.9
2,074,032	+		IAI47_09805	0.80	+0.4
2,074,033	-		IAI47_09805	0.80	-0.9
2,074,033	-		IAI47_09805	0.80	-2.7
2,074,034	+		IAI47_09805	0.80	+0.1
2,074,035	-		IAI47_09805	0.81	-1.7
2,074,035	-		IAI47_09805	0.81	-1.9
2,074,035	-		IAI47_09805	0.81	-2.1
2,074,069	+		IAI47_09805	0.85	-1.2
2,074,070	-		IAI47_09805	0.85	-1.4
2,074,173	+				-0.4
2,074,173	+				-1.5
2,074,173	+				-1.2
2,074,174	-				-2.6
2,074,192	+				-1.4
2,074,192	+				-2.4
2,074,193	-				+1.6
2,074,193	-				-1.9
2,074,223	+				-2.2
2,074,223	+				-1.1
2,074,223	+				-2.4
2,074,223	+				+0.5
2,074,223	+				-1.2
2,074,223	+				-0.5
2,074,223	+				-2.4
2,074,224	-				-2.1
2,074,224	-				+0.1
2,074,224	-				+1.6
2,074,224	-				-1.7
2,074,224	-				-0.6
2,074,224	-				+0.0
2,074,224	-				+0.8
2,074,269	+				-1.7
2,074,269	+				+0.2
2,074,269	+				-0.6
2,074,270	-				+0.7
2,074,270	-				+0.1
2,074,281	-				+1.3
2,074,321	+				-0.4
2,074,321	+				-0.5
2,074,321	+				+0.5
2,074,321	+				+0.4
2,074,322	-				+0.3
2,074,322	-				+0.8
2,074,322	-				-2.8
2,074,352	+				-0.1
2,074,353	-				-0.3
2,074,371	-				-1.4
2,074,438	+				+2.2
2,074,439	-				-1.2
2,074,439	-				+0.6
2,074,526	+				-0.2
2,074,529	-				-0.2
2,074,551	-				+2.4
2,074,551	-				-0.6
2,074,551	-				+0.5
2,074,551	-				-1.1
2,074,555	+				+0.2
2,074,555	+				+0.9
2,074,585	+				+1.1
2,074,586	-				+1.4
2,074,586	-				-0.6
2,074,586	-				+1.1
2,074,675	-				+0.1
2,074,714	+		IAI47_09810	0.10	+0.1
2,074,715	-		IAI47_09810	0.10	-0.1
2,074,795	+		IAI47_09810	0.16	+2.3
2,074,795	+		IAI47_09810	0.16	+1.3
2,074,795	+				+1.1
2,074,795	+		IAI47_09810	0.16	-1.7
2,074,817	+		IAI47_09810	0.18	+2.1
2,074,817	+		IAI47_09810	0.18	+0.3
2,074,817	+		IAI47_09810	0.18	-0.2
2,074,817	+		IAI47_09810	0.18	-0.0
2,074,817	+		IAI47_09810	0.18	+0.0
2,074,818	-		IAI47_09810	0.18	+0.0
2,074,818	-		IAI47_09810	0.18	+0.6
2,074,818	-		IAI47_09810	0.18	-0.1
2,074,818	-		IAI47_09810	0.18	+1.4
2,074,818	-		IAI47_09810	0.18	-1.2
2,074,818	-		IAI47_09810	0.18	+0.4
2,074,908	+		IAI47_09810	0.25	-1.5
2,074,908	+		IAI47_09810	0.25	+0.0
2,074,976	+		IAI47_09810	0.30	+1.4
2,074,977	-		IAI47_09810	0.30	-0.2
2,074,997	+		IAI47_09810	0.31	-0.6
2,074,998	-		IAI47_09810	0.31	-0.4
2,074,998	-		IAI47_09810	0.31	+0.1
2,074,998	-		IAI47_09810	0.31	+1.3
2,074,998	-		IAI47_09810	0.31	-3.0
2,075,106	-		IAI47_09810	0.40	+0.3
2,075,127	+		IAI47_09810	0.41	+0.2
2,075,128	-		IAI47_09810	0.41	+1.2
2,075,128	-		IAI47_09810	0.41	-0.4
2,075,162	+		IAI47_09810	0.44	-1.9