Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4010

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4009 and Ga0059261_4010 are separated by 79 nucleotidesGa0059261_4010 and Ga0059261_4011 are separated by 144 nucleotidesGa0059261_4011 and Ga0059261_4012 are separated by 105 nucleotides Ga0059261_4009: Ga0059261_4009 - Oligoendopeptidase F, at 4,123,823 to 4,125,649 _4009 Ga0059261_4010: Ga0059261_4010 - hypothetical protein, at 4,125,729 to 4,126,562 _4010 Ga0059261_4011: Ga0059261_4011 - hypothetical protein, at 4,126,707 to 4,127,219 _4011 Ga0059261_4012: Ga0059261_4012 - AMP nucleosidase, at 4,127,325 to 4,128,776 _4012 Position (kb) 4125 4126 4127Strain fitness (log2 ratio) -2 -1 0 1 2at 4124.735 kb on + strand, within Ga0059261_4009at 4124.735 kb on + strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.736 kb on - strand, within Ga0059261_4009at 4124.748 kb on - strand, within Ga0059261_4009at 4124.774 kb on + strand, within Ga0059261_4009at 4124.774 kb on + strand, within Ga0059261_4009at 4124.774 kb on + strand, within Ga0059261_4009at 4124.775 kb on - strand, within Ga0059261_4009at 4124.775 kb on - strand, within Ga0059261_4009at 4124.775 kb on - strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.969 kb on + strand, within Ga0059261_4009at 4124.970 kb on - strand, within Ga0059261_4009at 4124.970 kb on - strand, within Ga0059261_4009at 4124.970 kb on - strand, within Ga0059261_4009at 4124.970 kb on - strand, within Ga0059261_4009at 4124.970 kb on - strand, within Ga0059261_4009at 4124.970 kb on - strandat 4124.972 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strandat 4124.984 kb on + strand, within Ga0059261_4009at 4124.984 kb on + strand, within Ga0059261_4009at 4124.985 kb on - strand, within Ga0059261_4009at 4124.985 kb on - strand, within Ga0059261_4009at 4124.985 kb on - strand, within Ga0059261_4009at 4124.985 kb on - strand, within Ga0059261_4009at 4125.005 kb on + strand, within Ga0059261_4009at 4125.078 kb on - strand, within Ga0059261_4009at 4125.078 kb on - strand, within Ga0059261_4009at 4125.078 kb on - strand, within Ga0059261_4009at 4125.078 kb on - strand, within Ga0059261_4009at 4125.278 kb on + strand, within Ga0059261_4009at 4125.279 kb on - strand, within Ga0059261_4009at 4125.279 kb on - strand, within Ga0059261_4009at 4125.338 kb on + strand, within Ga0059261_4009at 4125.338 kb on + strand, within Ga0059261_4009at 4125.338 kb on + strand, within Ga0059261_4009at 4125.338 kb on + strand, within Ga0059261_4009at 4125.338 kb on + strand, within Ga0059261_4009at 4125.339 kb on - strand, within Ga0059261_4009at 4125.339 kb on - strand, within Ga0059261_4009at 4125.339 kb on - strand, within Ga0059261_4009at 4125.343 kb on + strand, within Ga0059261_4009at 4125.343 kb on + strand, within Ga0059261_4009at 4125.343 kb on + strand, within Ga0059261_4009at 4125.343 kb on + strand, within Ga0059261_4009at 4125.343 kb on + strand, within Ga0059261_4009at 4125.344 kb on - strand, within Ga0059261_4009at 4125.344 kb on - strand, within Ga0059261_4009at 4125.344 kb on - strand, within Ga0059261_4009at 4125.344 kb on - strand, within Ga0059261_4009at 4125.344 kb on - strand, within Ga0059261_4009at 4125.362 kb on + strand, within Ga0059261_4009at 4125.371 kb on + strand, within Ga0059261_4009at 4125.371 kb on + strand, within Ga0059261_4009at 4125.371 kb on + strand, within Ga0059261_4009at 4125.372 kb on - strand, within Ga0059261_4009at 4125.404 kb on + strand, within Ga0059261_4009at 4125.404 kb on + strand, within Ga0059261_4009at 4125.404 kb on + strand, within Ga0059261_4009at 4125.405 kb on - strand, within Ga0059261_4009at 4125.405 kb on - strand, within Ga0059261_4009at 4125.405 kb on - strand, within Ga0059261_4009at 4125.405 kb on - strand, within Ga0059261_4009at 4125.587 kb on + strandat 4125.587 kb on + strandat 4125.588 kb on - strandat 4125.647 kb on + strandat 4125.647 kb on + strandat 4125.647 kb on + strandat 4125.647 kb on + strandat 4125.648 kb on - strandat 4125.696 kb on + strandat 4125.696 kb on + strandat 4125.696 kb on + strandat 4125.696 kb on + strandat 4125.697 kb on - strandat 4125.697 kb on - strandat 4125.697 kb on - strandat 4125.697 kb on - strandat 4125.697 kb on - strandat 4125.710 kb on + strandat 4125.710 kb on + strandat 4125.710 kb on + strandat 4125.711 kb on - strandat 4125.711 kb on - strandat 4125.924 kb on + strand, within Ga0059261_4010at 4125.924 kb on + strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4125.925 kb on - strand, within Ga0059261_4010at 4126.115 kb on + strand, within Ga0059261_4010at 4126.115 kb on + strand, within Ga0059261_4010at 4126.302 kb on + strand, within Ga0059261_4010at 4126.341 kb on + strandat 4126.342 kb on - strand, within Ga0059261_4010at 4126.342 kb on - strand, within Ga0059261_4010at 4126.354 kb on - strand, within Ga0059261_4010at 4126.354 kb on - strand, within Ga0059261_4010at 4126.354 kb on - strand, within Ga0059261_4010at 4126.354 kb on - strand, within Ga0059261_4010at 4126.411 kb on + strand, within Ga0059261_4010at 4126.411 kb on + strand, within Ga0059261_4010at 4126.412 kb on - strand, within Ga0059261_4010at 4126.412 kb on - strand, within Ga0059261_4010at 4126.418 kb on + strand, within Ga0059261_4010at 4126.419 kb on - strand, within Ga0059261_4010at 4126.419 kb on - strand, within Ga0059261_4010at 4126.419 kb on - strand, within Ga0059261_4010at 4126.493 kb on + strandat 4126.493 kb on + strandat 4126.493 kb on + strandat 4126.493 kb on + strandat 4126.493 kb on + strandat 4126.494 kb on - strandat 4126.494 kb on - strandat 4126.494 kb on - strandat 4126.494 kb on - strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.506 kb on + strandat 4126.507 kb on - strandat 4126.507 kb on - strandat 4126.507 kb on - strandat 4126.507 kb on - strandat 4126.507 kb on - strandat 4126.560 kb on + strandat 4126.560 kb on + strandat 4126.560 kb on + strandat 4126.560 kb on + strandat 4126.561 kb on - strandat 4126.561 kb on - strandat 4126.561 kb on - strandat 4126.561 kb on - strandat 4126.561 kb on - strandat 4126.561 kb on - strandat 4126.568 kb on + strandat 4126.569 kb on - strandat 4126.569 kb on - strandat 4126.569 kb on - strandat 4126.569 kb on - strandat 4126.643 kb on + strandat 4126.643 kb on + strandat 4126.644 kb on - strandat 4126.644 kb on - strandat 4126.771 kb on - strand, within Ga0059261_4011at 4126.777 kb on + strand, within Ga0059261_4011at 4126.777 kb on + strand, within Ga0059261_4011at 4126.777 kb on + strand, within Ga0059261_4011at 4126.777 kb on + strand, within Ga0059261_4011at 4126.777 kb on + strand, within Ga0059261_4011at 4126.778 kb on - strand, within Ga0059261_4011at 4126.778 kb on - strand, within Ga0059261_4011at 4126.837 kb on - strand, within Ga0059261_4011at 4126.904 kb on + strand, within Ga0059261_4011at 4126.905 kb on - strand, within Ga0059261_4011at 4126.905 kb on - strand, within Ga0059261_4011at 4126.905 kb on - strand, within Ga0059261_4011

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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4,124,735 + Ga0059261_4009 0.50 +0.3
4,124,735 + Ga0059261_4009 0.50 +0.1
4,124,736 - Ga0059261_4009 0.50 -0.2
4,124,736 - Ga0059261_4009 0.50 -0.7
4,124,736 - Ga0059261_4009 0.50 +0.5
4,124,736 - Ga0059261_4009 0.50 +0.2
4,124,736 - Ga0059261_4009 0.50 +0.4
4,124,736 - Ga0059261_4009 0.50 -0.1
4,124,748 - Ga0059261_4009 0.51 -1.7
4,124,774 + Ga0059261_4009 0.52 -0.5
4,124,774 + Ga0059261_4009 0.52 +0.1
4,124,774 + Ga0059261_4009 0.52 -0.1
4,124,775 - Ga0059261_4009 0.52 -0.0
4,124,775 - Ga0059261_4009 0.52 -0.4
4,124,775 - Ga0059261_4009 0.52 +0.8
4,124,969 + Ga0059261_4009 0.63 -1.5
4,124,969 + Ga0059261_4009 0.63 +0.4
4,124,969 + Ga0059261_4009 0.63 -0.6
4,124,969 + Ga0059261_4009 0.63 +0.1
4,124,969 + Ga0059261_4009 0.63 -0.6
4,124,969 + Ga0059261_4009 0.63 +0.4
4,124,970 - Ga0059261_4009 0.63 +1.1
4,124,970 - Ga0059261_4009 0.63 +0.5
4,124,970 - Ga0059261_4009 0.63 -0.7
4,124,970 - Ga0059261_4009 0.63 +1.0
4,124,970 - Ga0059261_4009 0.63 -0.2
4,124,970 - +0.3
4,124,972 + Ga0059261_4009 0.63 -0.1
4,124,984 + Ga0059261_4009 0.64 -1.8
4,124,984 + Ga0059261_4009 0.64 -0.5
4,124,984 + Ga0059261_4009 0.64 +0.2
4,124,984 + Ga0059261_4009 0.64 -0.1
4,124,984 + -0.7
4,124,984 + Ga0059261_4009 0.64 +1.2
4,124,984 + Ga0059261_4009 0.64 -0.1
4,124,985 - Ga0059261_4009 0.64 +0.2
4,124,985 - Ga0059261_4009 0.64 -0.1
4,124,985 - Ga0059261_4009 0.64 +0.9
4,124,985 - Ga0059261_4009 0.64 +0.1
4,125,005 + Ga0059261_4009 0.65 +0.2
4,125,078 - Ga0059261_4009 0.69 +1.4
4,125,078 - Ga0059261_4009 0.69 +0.3
4,125,078 - Ga0059261_4009 0.69 +0.1
4,125,078 - Ga0059261_4009 0.69 +0.4
4,125,278 + Ga0059261_4009 0.80 -0.1
4,125,279 - Ga0059261_4009 0.80 +0.3
4,125,279 - Ga0059261_4009 0.80 +0.6
4,125,338 + Ga0059261_4009 0.83 -0.6
4,125,338 + Ga0059261_4009 0.83 -0.8
4,125,338 + Ga0059261_4009 0.83 +0.9
4,125,338 + Ga0059261_4009 0.83 +0.1
4,125,338 + Ga0059261_4009 0.83 -0.1
4,125,339 - Ga0059261_4009 0.83 -0.5
4,125,339 - Ga0059261_4009 0.83 +0.2
4,125,339 - Ga0059261_4009 0.83 -0.1
4,125,343 + Ga0059261_4009 0.83 +0.2
4,125,343 + Ga0059261_4009 0.83 +0.0
4,125,343 + Ga0059261_4009 0.83 +1.7
4,125,343 + Ga0059261_4009 0.83 +0.3
4,125,343 + Ga0059261_4009 0.83 +1.0
4,125,344 - Ga0059261_4009 0.83 +0.3
4,125,344 - Ga0059261_4009 0.83 -0.4
4,125,344 - Ga0059261_4009 0.83 +0.6
4,125,344 - Ga0059261_4009 0.83 +0.4
4,125,344 - Ga0059261_4009 0.83 -0.3
4,125,362 + Ga0059261_4009 0.84 +0.3
4,125,371 + Ga0059261_4009 0.85 -1.3
4,125,371 + Ga0059261_4009 0.85 +0.9
4,125,371 + Ga0059261_4009 0.85 +0.1
4,125,372 - Ga0059261_4009 0.85 +0.1
4,125,404 + Ga0059261_4009 0.87 -0.1
4,125,404 + Ga0059261_4009 0.87 -0.7
4,125,404 + Ga0059261_4009 0.87 -0.2
4,125,405 - Ga0059261_4009 0.87 +2.4
4,125,405 - Ga0059261_4009 0.87 +0.2
4,125,405 - Ga0059261_4009 0.87 +0.6
4,125,405 - Ga0059261_4009 0.87 -0.1
4,125,587 + +0.4
4,125,587 + -0.3
4,125,588 - -0.1
4,125,647 + +0.1
4,125,647 + -0.8
4,125,647 + -0.8
4,125,647 + +1.0
4,125,648 - +0.3
4,125,696 + -0.9
4,125,696 + +0.2
4,125,696 + -0.4
4,125,696 + -1.1
4,125,697 - -1.0
4,125,697 - -0.2
4,125,697 - +0.1
4,125,697 - +0.6
4,125,697 - -1.1
4,125,710 + -0.2
4,125,710 + +0.2
4,125,710 + +0.1
4,125,711 - +0.9
4,125,711 - -0.3
4,125,924 + Ga0059261_4010 0.23 -0.2
4,125,924 + Ga0059261_4010 0.23 +0.2
4,125,925 - Ga0059261_4010 0.24 +0.5
4,125,925 - Ga0059261_4010 0.24 +0.1
4,125,925 - Ga0059261_4010 0.24 -1.1
4,125,925 - Ga0059261_4010 0.24 +0.3
4,125,925 - Ga0059261_4010 0.24 +0.9
4,125,925 - Ga0059261_4010 0.24 +0.3
4,126,115 + Ga0059261_4010 0.46 +0.0
4,126,115 + Ga0059261_4010 0.46 +0.1
4,126,302 + Ga0059261_4010 0.69 +0.4
4,126,341 + +0.9
4,126,342 - Ga0059261_4010 0.74 +0.3
4,126,342 - Ga0059261_4010 0.74 +1.4
4,126,354 - Ga0059261_4010 0.75 -0.1
4,126,354 - Ga0059261_4010 0.75 +0.5
4,126,354 - Ga0059261_4010 0.75 +0.9
4,126,354 - Ga0059261_4010 0.75 -0.5
4,126,411 + Ga0059261_4010 0.82 +0.9
4,126,411 + Ga0059261_4010 0.82 +2.4
4,126,412 - Ga0059261_4010 0.82 -0.5
4,126,412 - Ga0059261_4010 0.82 +0.4
4,126,418 + Ga0059261_4010 0.83 -0.2
4,126,419 - Ga0059261_4010 0.83 +0.5
4,126,419 - Ga0059261_4010 0.83 +0.2
4,126,419 - Ga0059261_4010 0.83 -0.4
4,126,493 + +0.2
4,126,493 + -0.7
4,126,493 + +0.9
4,126,493 + +0.9
4,126,493 + -0.1
4,126,494 - -0.2
4,126,494 - -1.0
4,126,494 - +0.1
4,126,494 - +0.5
4,126,506 + +1.4
4,126,506 + -0.5
4,126,506 + +0.7
4,126,506 + -1.1
4,126,506 + +0.7
4,126,506 + -0.8
4,126,506 + -1.6
4,126,507 - -0.0
4,126,507 - +0.5
4,126,507 - -0.6
4,126,507 - +0.9
4,126,507 - +0.1
4,126,560 + -0.4
4,126,560 + +0.4
4,126,560 + -0.1
4,126,560 + -2.0
4,126,561 - +0.7
4,126,561 - +0.1
4,126,561 - +0.0
4,126,561 - -0.1
4,126,561 - +0.5
4,126,561 - -0.5
4,126,568 + -0.1
4,126,569 - +0.2
4,126,569 - +0.3
4,126,569 - +0.2
4,126,569 - +0.5
4,126,643 + -0.6
4,126,643 + +0.9
4,126,644 - -1.3
4,126,644 - +1.3
4,126,771 - Ga0059261_4011 0.12 +0.3
4,126,777 + Ga0059261_4011 0.14 -1.5
4,126,777 + Ga0059261_4011 0.14 -1.1
4,126,777 + Ga0059261_4011 0.14 +0.2
4,126,777 + Ga0059261_4011 0.14 -1.5
4,126,777 + Ga0059261_4011 0.14 +0.0
4,126,778 - Ga0059261_4011 0.14 -0.1
4,126,778 - Ga0059261_4011 0.14 -0.1
4,126,837 - Ga0059261_4011 0.25 -0.2
4,126,904 + Ga0059261_4011 0.38 -0.4
4,126,905 - Ga0059261_4011 0.39 -0.8
4,126,905 - Ga0059261_4011 0.39 +2.0
4,126,905 - Ga0059261_4011 0.39 -0.4

Or see this region's nucleotide sequence