Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2216 and Ga0059261_2217 overlap by 4 nucleotides Ga0059261_2217 and Ga0059261_2218 overlap by 4 nucleotides Ga0059261_2218 and Ga0059261_2219 overlap by 1 nucleotides
Ga0059261_2216: Ga0059261_2216 - pyridoxal phosphate enzyme, YggS family, at 2,320,497 to 2,321,165
_2216
Ga0059261_2217: Ga0059261_2217 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 2,321,162 to 2,321,836
_2217
Ga0059261_2218: Ga0059261_2218 - hypothetical protein, at 2,321,833 to 2,322,267
_2218
Ga0059261_2219: Ga0059261_2219 - GTP cyclohydrolase II, at 2,322,267 to 2,323,325
_2219
Position (kb)
2321
2322
2323 Strain fitness (log2 ratio)
-1
0
1 at 2320.889 kb on + strand, within Ga0059261_2216 at 2321.022 kb on + strand, within Ga0059261_2216 at 2321.022 kb on + strand, within Ga0059261_2216 at 2321.022 kb on + strand, within Ga0059261_2216 at 2321.022 kb on + strand, within Ga0059261_2216 at 2321.023 kb on - strand, within Ga0059261_2216 at 2321.256 kb on - strand, within Ga0059261_2217 at 2321.618 kb on + strand, within Ga0059261_2217 at 2321.834 kb on + strand at 2321.834 kb on + strand at 2321.834 kb on + strand at 2321.835 kb on - strand at 2321.835 kb on - strand at 2321.900 kb on - strand, within Ga0059261_2218 at 2321.908 kb on - strand, within Ga0059261_2218 at 2321.989 kb on + strand, within Ga0059261_2218 at 2321.990 kb on - strand, within Ga0059261_2218 at 2321.990 kb on - strand, within Ga0059261_2218 at 2322.065 kb on + strand, within Ga0059261_2218 at 2322.065 kb on + strand, within Ga0059261_2218 at 2322.065 kb on + strand, within Ga0059261_2218 at 2322.066 kb on - strand, within Ga0059261_2218 at 2322.176 kb on + strand, within Ga0059261_2218 at 2322.176 kb on + strand, within Ga0059261_2218 at 2322.177 kb on - strand, within Ga0059261_2218 at 2322.199 kb on - strand, within Ga0059261_2218 at 2322.257 kb on + strand at 2322.257 kb on + strand at 2322.257 kb on + strand at 2322.257 kb on + strand at 2322.258 kb on - strand at 2322.258 kb on - strand at 2322.258 kb on - strand at 2322.258 kb on - strand at 2322.258 kb on - strand at 2322.258 kb on - strand at 2322.260 kb on + strand at 2322.260 kb on + strand at 2322.261 kb on - strand at 2322.261 kb on - strand at 2322.261 kb on - strand at 2322.261 kb on - strand at 2322.261 kb on - strand at 2322.268 kb on + strand at 2322.268 kb on + strand at 2322.269 kb on - strand at 2322.269 kb on - strand at 2322.269 kb on - strand at 2322.269 kb on - strand at 2322.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,320,889 + Ga0059261_2216 0.59 -0.5 2,321,022 + Ga0059261_2216 0.78 +0.6 2,321,022 + Ga0059261_2216 0.78 -0.1 2,321,022 + Ga0059261_2216 0.78 -0.4 2,321,022 + Ga0059261_2216 0.78 -0.7 2,321,023 - Ga0059261_2216 0.79 -0.8 2,321,256 - Ga0059261_2217 0.14 +0.7 2,321,618 + Ga0059261_2217 0.68 -0.4 2,321,834 + +1.0 2,321,834 + -0.5 2,321,834 + +0.1 2,321,835 - +1.2 2,321,835 - +0.7 2,321,900 - Ga0059261_2218 0.15 -0.1 2,321,908 - Ga0059261_2218 0.17 +0.5 2,321,989 + Ga0059261_2218 0.36 +0.5 2,321,990 - Ga0059261_2218 0.36 +0.1 2,321,990 - Ga0059261_2218 0.36 +0.7 2,322,065 + Ga0059261_2218 0.53 +0.2 2,322,065 + Ga0059261_2218 0.53 +0.2 2,322,065 + Ga0059261_2218 0.53 +0.0 2,322,066 - Ga0059261_2218 0.54 +0.3 2,322,176 + Ga0059261_2218 0.79 +0.8 2,322,176 + Ga0059261_2218 0.79 -0.4 2,322,177 - Ga0059261_2218 0.79 -0.2 2,322,199 - Ga0059261_2218 0.84 -0.0 2,322,257 + +0.4 2,322,257 + +0.5 2,322,257 + -0.1 2,322,257 + +0.3 2,322,258 - -0.6 2,322,258 - -0.6 2,322,258 - +1.5 2,322,258 - +0.6 2,322,258 - -0.7 2,322,258 - +0.4 2,322,260 + +0.2 2,322,260 + -0.4 2,322,261 - -0.6 2,322,261 - +1.2 2,322,261 - +0.5 2,322,261 - -0.1 2,322,261 - -0.3 2,322,268 + -0.3 2,322,268 + +0.4 2,322,269 - +0.3 2,322,269 - -0.2 2,322,269 - +0.3 2,322,269 - -0.2 2,322,269 - -0.5
Or see this region's nucleotide sequence