Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2218

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2216 and Ga0059261_2217 overlap by 4 nucleotidesGa0059261_2217 and Ga0059261_2218 overlap by 4 nucleotidesGa0059261_2218 and Ga0059261_2219 overlap by 1 nucleotides Ga0059261_2216: Ga0059261_2216 - pyridoxal phosphate enzyme, YggS family, at 2,320,497 to 2,321,165 _2216 Ga0059261_2217: Ga0059261_2217 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 2,321,162 to 2,321,836 _2217 Ga0059261_2218: Ga0059261_2218 - hypothetical protein, at 2,321,833 to 2,322,267 _2218 Ga0059261_2219: Ga0059261_2219 - GTP cyclohydrolase II, at 2,322,267 to 2,323,325 _2219 Position (kb) 2321 2322 2323Strain fitness (log2 ratio) -1 0 1at 2320.889 kb on + strand, within Ga0059261_2216at 2321.022 kb on + strand, within Ga0059261_2216at 2321.022 kb on + strand, within Ga0059261_2216at 2321.022 kb on + strand, within Ga0059261_2216at 2321.022 kb on + strand, within Ga0059261_2216at 2321.023 kb on - strand, within Ga0059261_2216at 2321.256 kb on - strand, within Ga0059261_2217at 2321.618 kb on + strand, within Ga0059261_2217at 2321.834 kb on + strandat 2321.834 kb on + strandat 2321.834 kb on + strandat 2321.835 kb on - strandat 2321.835 kb on - strandat 2321.900 kb on - strand, within Ga0059261_2218at 2321.908 kb on - strand, within Ga0059261_2218at 2321.989 kb on + strand, within Ga0059261_2218at 2321.990 kb on - strand, within Ga0059261_2218at 2321.990 kb on - strand, within Ga0059261_2218at 2322.065 kb on + strand, within Ga0059261_2218at 2322.065 kb on + strand, within Ga0059261_2218at 2322.065 kb on + strand, within Ga0059261_2218at 2322.066 kb on - strand, within Ga0059261_2218at 2322.176 kb on + strand, within Ga0059261_2218at 2322.176 kb on + strand, within Ga0059261_2218at 2322.177 kb on - strand, within Ga0059261_2218at 2322.199 kb on - strand, within Ga0059261_2218at 2322.257 kb on + strandat 2322.257 kb on + strandat 2322.257 kb on + strandat 2322.257 kb on + strandat 2322.258 kb on - strandat 2322.258 kb on - strandat 2322.258 kb on - strandat 2322.258 kb on - strandat 2322.258 kb on - strandat 2322.258 kb on - strandat 2322.260 kb on + strandat 2322.260 kb on + strandat 2322.261 kb on - strandat 2322.261 kb on - strandat 2322.261 kb on - strandat 2322.261 kb on - strandat 2322.261 kb on - strandat 2322.268 kb on + strandat 2322.268 kb on + strandat 2322.269 kb on - strandat 2322.269 kb on - strandat 2322.269 kb on - strandat 2322.269 kb on - strandat 2322.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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2,320,889 + Ga0059261_2216 0.59 -0.5
2,321,022 + Ga0059261_2216 0.78 +0.6
2,321,022 + Ga0059261_2216 0.78 -0.1
2,321,022 + Ga0059261_2216 0.78 -0.4
2,321,022 + Ga0059261_2216 0.78 -0.7
2,321,023 - Ga0059261_2216 0.79 -0.8
2,321,256 - Ga0059261_2217 0.14 +0.7
2,321,618 + Ga0059261_2217 0.68 -0.4
2,321,834 + +1.0
2,321,834 + -0.5
2,321,834 + +0.1
2,321,835 - +1.2
2,321,835 - +0.7
2,321,900 - Ga0059261_2218 0.15 -0.1
2,321,908 - Ga0059261_2218 0.17 +0.5
2,321,989 + Ga0059261_2218 0.36 +0.5
2,321,990 - Ga0059261_2218 0.36 +0.1
2,321,990 - Ga0059261_2218 0.36 +0.7
2,322,065 + Ga0059261_2218 0.53 +0.2
2,322,065 + Ga0059261_2218 0.53 +0.2
2,322,065 + Ga0059261_2218 0.53 +0.0
2,322,066 - Ga0059261_2218 0.54 +0.3
2,322,176 + Ga0059261_2218 0.79 +0.8
2,322,176 + Ga0059261_2218 0.79 -0.4
2,322,177 - Ga0059261_2218 0.79 -0.2
2,322,199 - Ga0059261_2218 0.84 -0.0
2,322,257 + +0.4
2,322,257 + +0.5
2,322,257 + -0.1
2,322,257 + +0.3
2,322,258 - -0.6
2,322,258 - -0.6
2,322,258 - +1.5
2,322,258 - +0.6
2,322,258 - -0.7
2,322,258 - +0.4
2,322,260 + +0.2
2,322,260 + -0.4
2,322,261 - -0.6
2,322,261 - +1.2
2,322,261 - +0.5
2,322,261 - -0.1
2,322,261 - -0.3
2,322,268 + -0.3
2,322,268 + +0.4
2,322,269 - +0.3
2,322,269 - -0.2
2,322,269 - +0.3
2,322,269 - -0.2
2,322,269 - -0.5

Or see this region's nucleotide sequence