Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1867

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1865 and Ga0059261_1866 are separated by 141 nucleotidesGa0059261_1866 and Ga0059261_1867 are separated by 86 nucleotidesGa0059261_1867 and Ga0059261_1868 overlap by 4 nucleotidesGa0059261_1868 and Ga0059261_1869 are separated by 8 nucleotides Ga0059261_1865: Ga0059261_1865 - Domain of unknown function (DUF4102)/Phage integrase family, at 1,977,411 to 1,978,436 _1865 Ga0059261_1866: Ga0059261_1866 - tRNA, at 1,978,578 to 1,978,668 _1866 Ga0059261_1867: Ga0059261_1867 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,978,755 to 1,979,609 _1867 Ga0059261_1868: Ga0059261_1868 - ABC-type uncharacterized transport system, auxiliary component, at 1,979,606 to 1,980,214 _1868 Ga0059261_1869: Ga0059261_1869 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,980,223 to 1,981,194 _1869 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -2 -1 0 1 2at 1977.823 kb on + strand, within Ga0059261_1865at 1977.830 kb on + strand, within Ga0059261_1865at 1977.830 kb on + strand, within Ga0059261_1865at 1977.831 kb on - strand, within Ga0059261_1865at 1977.831 kb on - strand, within Ga0059261_1865at 1977.831 kb on - strand, within Ga0059261_1865at 1977.947 kb on + strand, within Ga0059261_1865at 1977.947 kb on + strand, within Ga0059261_1865at 1977.948 kb on - strand, within Ga0059261_1865at 1977.948 kb on - strand, within Ga0059261_1865at 1977.948 kb on - strand, within Ga0059261_1865at 1977.948 kb on - strand, within Ga0059261_1865at 1978.031 kb on + strand, within Ga0059261_1865at 1978.031 kb on + strand, within Ga0059261_1865at 1978.032 kb on - strand, within Ga0059261_1865at 1978.032 kb on - strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.066 kb on + strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.067 kb on - strand, within Ga0059261_1865at 1978.074 kb on + strand, within Ga0059261_1865at 1978.170 kb on - strand, within Ga0059261_1865at 1978.293 kb on - strand, within Ga0059261_1865at 1978.311 kb on - strand, within Ga0059261_1865at 1978.311 kb on - strandat 1978.311 kb on - strand, within Ga0059261_1865at 1978.365 kb on + strandat 1978.365 kb on + strandat 1978.365 kb on + strandat 1978.365 kb on + strandat 1978.366 kb on - strandat 1978.384 kb on + strandat 1978.534 kb on + strandat 1978.544 kb on + strandat 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.898 kb on + strand, within Ga0059261_1867at 1978.898 kb on + strand, within Ga0059261_1867at 1978.899 kb on - strand, within Ga0059261_1867at 1978.899 kb on - strand, within Ga0059261_1867at 1978.917 kb on + strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.987 kb on - strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.114 kb on + strand, within Ga0059261_1867at 1979.130 kb on + strand, within Ga0059261_1867at 1979.131 kb on - strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.246 kb on + strand, within Ga0059261_1867at 1979.247 kb on - strand, within Ga0059261_1867at 1979.267 kb on - strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strandat 1979.275 kb on + strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.391 kb on + strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.472 kb on - strand, within Ga0059261_1867at 1979.475 kb on + strand, within Ga0059261_1867at 1979.570 kb on + strandat 1979.570 kb on + strandat 1979.570 kb on + strandat 1979.985 kb on + strandat 1979.985 kb on + strand, within Ga0059261_1868at 1979.985 kb on + strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.243 kb on - strandat 1980.243 kb on - strandat 1980.243 kb on - strandat 1980.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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1,977,823 + Ga0059261_1865 0.40 +0.3
1,977,830 + Ga0059261_1865 0.41 +0.6
1,977,830 + Ga0059261_1865 0.41 -0.5
1,977,831 - Ga0059261_1865 0.41 -0.2
1,977,831 - Ga0059261_1865 0.41 -0.0
1,977,831 - Ga0059261_1865 0.41 -0.6
1,977,947 + Ga0059261_1865 0.52 +0.6
1,977,947 + Ga0059261_1865 0.52 -0.2
1,977,948 - Ga0059261_1865 0.52 -0.6
1,977,948 - Ga0059261_1865 0.52 +0.2
1,977,948 - Ga0059261_1865 0.52 +0.0
1,977,948 - Ga0059261_1865 0.52 +0.2
1,978,031 + Ga0059261_1865 0.60 -0.8
1,978,031 + Ga0059261_1865 0.60 -0.0
1,978,032 - Ga0059261_1865 0.61 -0.1
1,978,032 - Ga0059261_1865 0.61 -0.9
1,978,066 + Ga0059261_1865 0.64 -0.7
1,978,066 + Ga0059261_1865 0.64 +0.3
1,978,066 + Ga0059261_1865 0.64 +1.6
1,978,066 + Ga0059261_1865 0.64 +0.1
1,978,066 + Ga0059261_1865 0.64 -0.2
1,978,066 + Ga0059261_1865 0.64 -0.7
1,978,066 + Ga0059261_1865 0.64 +1.8
1,978,066 + Ga0059261_1865 0.64 +0.4
1,978,066 + Ga0059261_1865 0.64 +2.0
1,978,067 - Ga0059261_1865 0.64 -1.1
1,978,067 - Ga0059261_1865 0.64 +0.1
1,978,067 - Ga0059261_1865 0.64 -0.0
1,978,067 - Ga0059261_1865 0.64 -0.2
1,978,067 - Ga0059261_1865 0.64 -0.2
1,978,067 - Ga0059261_1865 0.64 +0.7
1,978,074 + Ga0059261_1865 0.65 +0.1
1,978,170 - Ga0059261_1865 0.74 -0.5
1,978,293 - Ga0059261_1865 0.86 -0.4
1,978,311 - Ga0059261_1865 0.88 +0.1
1,978,311 - -0.0
1,978,311 - Ga0059261_1865 0.88 +0.1
1,978,365 + +0.6
1,978,365 + -0.3
1,978,365 + +0.3
1,978,365 + +0.8
1,978,366 - -0.0
1,978,384 + -1.0
1,978,534 + -0.2
1,978,544 + -0.4
1,978,896 + Ga0059261_1867 0.16 -0.0
1,978,896 + Ga0059261_1867 0.16 -1.3
1,978,896 + Ga0059261_1867 0.16 +1.6
1,978,896 + Ga0059261_1867 0.16 -0.0
1,978,896 + Ga0059261_1867 0.16 +0.6
1,978,896 + Ga0059261_1867 0.16 +0.9
1,978,897 - Ga0059261_1867 0.17 -0.3
1,978,897 - Ga0059261_1867 0.17 -0.8
1,978,897 - Ga0059261_1867 0.17 -0.6
1,978,897 - Ga0059261_1867 0.17 +0.1
1,978,897 - Ga0059261_1867 0.17 +1.0
1,978,897 - Ga0059261_1867 0.17 +0.2
1,978,897 - Ga0059261_1867 0.17 +0.8
1,978,898 + Ga0059261_1867 0.17 +0.3
1,978,898 + Ga0059261_1867 0.17 -0.4
1,978,899 - Ga0059261_1867 0.17 +0.7
1,978,899 - Ga0059261_1867 0.17 +0.3
1,978,917 + Ga0059261_1867 0.19 +0.8
1,978,918 - Ga0059261_1867 0.19 +0.2
1,978,918 - Ga0059261_1867 0.19 -0.3
1,978,918 - Ga0059261_1867 0.19 +0.6
1,978,987 - Ga0059261_1867 0.27 -1.4
1,979,004 + Ga0059261_1867 0.29 +0.2
1,979,004 + Ga0059261_1867 0.29 -0.0
1,979,004 + Ga0059261_1867 0.29 +0.4
1,979,004 + Ga0059261_1867 0.29 +0.3
1,979,004 + Ga0059261_1867 0.29 +0.7
1,979,004 + Ga0059261_1867 0.29 +0.1
1,979,004 + Ga0059261_1867 0.29 -0.4
1,979,004 + Ga0059261_1867 0.29 -0.2
1,979,004 + Ga0059261_1867 0.29 +0.1
1,979,004 + Ga0059261_1867 0.29 -0.5
1,979,005 - Ga0059261_1867 0.29 +0.5
1,979,005 - Ga0059261_1867 0.29 +0.9
1,979,005 - Ga0059261_1867 0.29 -0.5
1,979,005 - Ga0059261_1867 0.29 +0.2
1,979,005 - Ga0059261_1867 0.29 -0.2
1,979,005 - Ga0059261_1867 0.29 -0.0
1,979,005 - Ga0059261_1867 0.29 +0.4
1,979,005 - Ga0059261_1867 0.29 -0.2
1,979,005 - Ga0059261_1867 0.29 -0.4
1,979,005 - Ga0059261_1867 0.29 +0.2
1,979,005 - Ga0059261_1867 0.29 -1.1
1,979,005 - Ga0059261_1867 0.29 -0.3
1,979,005 - Ga0059261_1867 0.29 -0.4
1,979,005 - Ga0059261_1867 0.29 +1.0
1,979,079 + Ga0059261_1867 0.38 -0.3
1,979,079 + Ga0059261_1867 0.38 -0.3
1,979,079 + Ga0059261_1867 0.38 +0.5
1,979,094 + Ga0059261_1867 0.40 +0.1
1,979,094 + Ga0059261_1867 0.40 -0.8
1,979,094 + Ga0059261_1867 0.40 +0.6
1,979,094 + Ga0059261_1867 0.40 -0.0
1,979,095 - Ga0059261_1867 0.40 -0.2
1,979,095 - Ga0059261_1867 0.40 +1.0
1,979,095 - Ga0059261_1867 0.40 -0.5
1,979,095 - Ga0059261_1867 0.40 -0.5
1,979,095 - Ga0059261_1867 0.40 +0.4
1,979,095 - Ga0059261_1867 0.40 +0.4
1,979,095 - Ga0059261_1867 0.40 -0.8
1,979,095 - Ga0059261_1867 0.40 -0.0
1,979,114 + Ga0059261_1867 0.42 +0.5
1,979,130 + Ga0059261_1867 0.44 +0.7
1,979,131 - Ga0059261_1867 0.44 -0.1
1,979,208 + Ga0059261_1867 0.53 +0.0
1,979,208 + Ga0059261_1867 0.53 +0.1
1,979,208 + Ga0059261_1867 0.53 -0.2
1,979,208 + Ga0059261_1867 0.53 +0.1
1,979,208 + Ga0059261_1867 0.53 -0.4
1,979,208 + Ga0059261_1867 0.53 +0.6
1,979,209 - Ga0059261_1867 0.53 -0.4
1,979,209 - Ga0059261_1867 0.53 -0.4
1,979,209 - Ga0059261_1867 0.53 +0.1
1,979,209 - Ga0059261_1867 0.53 -0.4
1,979,209 - Ga0059261_1867 0.53 -0.0
1,979,246 + Ga0059261_1867 0.57 -0.6
1,979,247 - Ga0059261_1867 0.58 -0.8
1,979,267 - Ga0059261_1867 0.60 +0.6
1,979,268 + Ga0059261_1867 0.60 -0.7
1,979,268 + Ga0059261_1867 0.60 +0.8
1,979,268 + Ga0059261_1867 0.60 -1.0
1,979,268 + Ga0059261_1867 0.60 +0.4
1,979,268 + Ga0059261_1867 0.60 +0.7
1,979,269 - Ga0059261_1867 0.60 -0.3
1,979,269 - Ga0059261_1867 0.60 +1.0
1,979,269 - Ga0059261_1867 0.60 +1.6
1,979,269 - Ga0059261_1867 0.60 -0.3
1,979,269 - Ga0059261_1867 0.60 +0.4
1,979,269 - Ga0059261_1867 0.60 +1.0
1,979,269 - Ga0059261_1867 0.60 +1.8
1,979,269 - -0.0
1,979,275 + Ga0059261_1867 0.61 +0.3
1,979,276 - Ga0059261_1867 0.61 +0.3
1,979,276 - Ga0059261_1867 0.61 +0.1
1,979,276 - Ga0059261_1867 0.61 -0.8
1,979,276 - Ga0059261_1867 0.61 -0.4
1,979,391 + Ga0059261_1867 0.74 +0.2
1,979,392 - Ga0059261_1867 0.75 -0.2
1,979,392 - Ga0059261_1867 0.75 +1.0
1,979,392 - Ga0059261_1867 0.75 +0.5
1,979,392 - Ga0059261_1867 0.75 -0.6
1,979,392 - Ga0059261_1867 0.75 -1.5
1,979,392 - Ga0059261_1867 0.75 +0.5
1,979,472 - Ga0059261_1867 0.84 -0.0
1,979,475 + Ga0059261_1867 0.84 +1.6
1,979,570 + -0.1
1,979,570 + -1.1
1,979,570 + -0.1
1,979,985 + +1.0
1,979,985 + Ga0059261_1868 0.62 +0.2
1,979,985 + Ga0059261_1868 0.62 -1.3
1,979,986 - Ga0059261_1868 0.62 -1.8
1,979,986 - Ga0059261_1868 0.62 -1.1
1,979,986 - Ga0059261_1868 0.62 -2.3
1,980,242 + -1.4
1,980,242 + -0.8
1,980,242 + -1.8
1,980,242 + -1.1
1,980,242 + -1.2
1,980,243 - -1.3
1,980,243 - -2.3
1,980,243 - +1.6
1,980,243 - -0.0

Or see this region's nucleotide sequence