Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0811

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0810 and Ga0059261_0811 overlap by 8 nucleotidesGa0059261_0811 and Ga0059261_0812 are separated by 70 nucleotidesGa0059261_0812 and Ga0059261_0813 are separated by 16 nucleotides Ga0059261_0810: Ga0059261_0810 - Predicted Zn-dependent proteases and their inactivated homologs, at 852,457 to 853,803 _0810 Ga0059261_0811: Ga0059261_0811 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 853,796 to 854,584 _0811 Ga0059261_0812: Ga0059261_0812 - Short-chain alcohol dehydrogenase of unknown specificity, at 854,655 to 855,416 _0812 Ga0059261_0813: Ga0059261_0813 - hypothetical protein, at 855,433 to 855,915 _0813 Position (kb) 853 854 855Strain fitness (log2 ratio) -1 0 1 2at 852.970 kb on + strand, within Ga0059261_0810at 852.970 kb on + strand, within Ga0059261_0810at 852.971 kb on - strand, within Ga0059261_0810at 853.039 kb on + strand, within Ga0059261_0810at 853.039 kb on + strand, within Ga0059261_0810at 853.039 kb on + strand, within Ga0059261_0810at 853.040 kb on - strand, within Ga0059261_0810at 853.472 kb on + strand, within Ga0059261_0810at 854.206 kb on + strand, within Ga0059261_0811at 854.206 kb on + strand, within Ga0059261_0811at 854.207 kb on - strand, within Ga0059261_0811at 854.215 kb on + strand, within Ga0059261_0811at 854.438 kb on - strand, within Ga0059261_0811at 854.850 kb on + strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 855.006 kb on + strand, within Ga0059261_0812at 855.014 kb on + strand, within Ga0059261_0812at 855.015 kb on - strand, within Ga0059261_0812at 855.114 kb on + strand, within Ga0059261_0812at 855.114 kb on + strand, within Ga0059261_0812at 855.434 kb on + strandat 855.435 kb on - strandat 855.520 kb on - strand, within Ga0059261_0813at 855.520 kb on - strand, within Ga0059261_0813at 855.520 kb on - strand, within Ga0059261_0813at 855.552 kb on + strandat 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strandat 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.584 kb on + strand, within Ga0059261_0813

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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852,970 + Ga0059261_0810 0.38 +0.5
852,970 + Ga0059261_0810 0.38 +0.1
852,971 - Ga0059261_0810 0.38 -0.1
853,039 + Ga0059261_0810 0.43 -0.1
853,039 + Ga0059261_0810 0.43 -0.1
853,039 + Ga0059261_0810 0.43 -0.5
853,040 - Ga0059261_0810 0.43 +0.2
853,472 + Ga0059261_0810 0.75 -0.4
854,206 + Ga0059261_0811 0.52 -0.0
854,206 + Ga0059261_0811 0.52 +1.1
854,207 - Ga0059261_0811 0.52 +1.2
854,215 + Ga0059261_0811 0.53 +0.4
854,438 - Ga0059261_0811 0.81 +0.4
854,850 + Ga0059261_0812 0.26 -0.3
854,851 - Ga0059261_0812 0.26 -0.3
854,851 - Ga0059261_0812 0.26 +0.4
854,851 - Ga0059261_0812 0.26 +0.5
855,006 + Ga0059261_0812 0.46 +0.6
855,014 + Ga0059261_0812 0.47 +0.4
855,015 - Ga0059261_0812 0.47 +0.9
855,114 + Ga0059261_0812 0.60 -0.3
855,114 + Ga0059261_0812 0.60 +0.3
855,434 + +0.4
855,435 - +0.4
855,520 - Ga0059261_0813 0.18 -0.1
855,520 - Ga0059261_0813 0.18 +1.0
855,520 - Ga0059261_0813 0.18 +1.2
855,552 + +1.9
855,552 + Ga0059261_0813 0.25 -0.8
855,552 + Ga0059261_0813 0.25 -0.5
855,552 + Ga0059261_0813 0.25 +0.1
855,552 + Ga0059261_0813 0.25 -0.0
855,553 - Ga0059261_0813 0.25 +1.1
855,553 - Ga0059261_0813 0.25 -0.2
855,553 - Ga0059261_0813 0.25 +0.1
855,553 - Ga0059261_0813 0.25 +0.1
855,553 - Ga0059261_0813 0.25 +0.3
855,553 - Ga0059261_0813 0.25 +0.3
855,553 - Ga0059261_0813 0.25 -0.0
855,553 - Ga0059261_0813 0.25 -0.3
855,553 - Ga0059261_0813 0.25 +0.2
855,553 - Ga0059261_0813 0.25 -0.4
855,554 + Ga0059261_0813 0.25 +0.3
855,554 + Ga0059261_0813 0.25 +0.0
855,554 + Ga0059261_0813 0.25 +0.0
855,554 + Ga0059261_0813 0.25 +0.0
855,554 + Ga0059261_0813 0.25 -1.2
855,554 + Ga0059261_0813 0.25 -0.6
855,554 + Ga0059261_0813 0.25 +0.1
855,554 + Ga0059261_0813 0.25 -0.2
855,554 + Ga0059261_0813 0.25 -0.6
855,554 + Ga0059261_0813 0.25 -0.5
855,554 + Ga0059261_0813 0.25 +0.7
855,555 - Ga0059261_0813 0.25 +0.0
855,555 - Ga0059261_0813 0.25 -0.4
855,555 - Ga0059261_0813 0.25 -0.2
855,555 - Ga0059261_0813 0.25 -0.4
855,555 - Ga0059261_0813 0.25 -0.9
855,555 - Ga0059261_0813 0.25 -0.9
855,555 - -0.1
855,555 - Ga0059261_0813 0.25 -0.4
855,555 - Ga0059261_0813 0.25 -1.7
855,555 - Ga0059261_0813 0.25 -0.3
855,584 + Ga0059261_0813 0.31 -0.0

Or see this region's nucleotide sequence