Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0328

Experiment: Nalidixic 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0327 and Ga0059261_0328 overlap by 4 nucleotidesGa0059261_0328 and Ga0059261_0329 are separated by 19 nucleotides Ga0059261_0327: Ga0059261_0327 - hypothetical protein, at 309,621 to 311,498 _0327 Ga0059261_0328: Ga0059261_0328 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 311,495 to 312,382 _0328 Ga0059261_0329: Ga0059261_0329 - ATPase components of ABC transporters with duplicated ATPase domains, at 312,402 to 314,270 _0329 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 310.600 kb on + strand, within Ga0059261_0327at 310.600 kb on + strand, within Ga0059261_0327at 310.600 kb on + strand, within Ga0059261_0327at 310.600 kb on + strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.601 kb on - strand, within Ga0059261_0327at 310.737 kb on + strand, within Ga0059261_0327at 310.803 kb on + strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.804 kb on - strand, within Ga0059261_0327at 310.888 kb on - strand, within Ga0059261_0327at 310.968 kb on + strand, within Ga0059261_0327at 310.968 kb on + strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 310.969 kb on - strand, within Ga0059261_0327at 311.007 kb on + strand, within Ga0059261_0327at 311.008 kb on - strand, within Ga0059261_0327at 311.125 kb on + strand, within Ga0059261_0327at 311.125 kb on + strand, within Ga0059261_0327at 311.125 kb on + strand, within Ga0059261_0327at 311.125 kb on + strand, within Ga0059261_0327at 311.125 kb on + strand, within Ga0059261_0327at 311.126 kb on - strand, within Ga0059261_0327at 311.126 kb on - strand, within Ga0059261_0327at 311.126 kb on - strand, within Ga0059261_0327at 311.126 kb on - strand, within Ga0059261_0327at 311.126 kb on - strand, within Ga0059261_0327at 311.228 kb on + strand, within Ga0059261_0327at 311.228 kb on + strand, within Ga0059261_0327at 311.228 kb on + strand, within Ga0059261_0327at 311.229 kb on - strand, within Ga0059261_0327at 311.229 kb on - strand, within Ga0059261_0327at 311.229 kb on - strand, within Ga0059261_0327at 311.283 kb on + strand, within Ga0059261_0327at 311.283 kb on + strand, within Ga0059261_0327at 311.283 kb on + strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.284 kb on - strand, within Ga0059261_0327at 311.422 kb on + strandat 311.423 kb on - strandat 311.440 kb on + strandat 311.440 kb on + strandat 311.441 kb on - strandat 311.441 kb on - strandat 311.562 kb on + strandat 311.592 kb on - strand, within Ga0059261_0328at 311.707 kb on - strand, within Ga0059261_0328at 311.770 kb on + strand, within Ga0059261_0328at 311.770 kb on + strand, within Ga0059261_0328at 311.770 kb on + strand, within Ga0059261_0328at 311.770 kb on + strand, within Ga0059261_0328at 311.771 kb on - strand, within Ga0059261_0328at 311.771 kb on - strand, within Ga0059261_0328at 311.772 kb on + strand, within Ga0059261_0328at 311.772 kb on + strand, within Ga0059261_0328at 311.772 kb on + strand, within Ga0059261_0328at 311.772 kb on + strand, within Ga0059261_0328at 311.773 kb on - strand, within Ga0059261_0328at 311.773 kb on - strand, within Ga0059261_0328at 311.773 kb on - strand, within Ga0059261_0328at 311.773 kb on - strand, within Ga0059261_0328at 311.788 kb on + strand, within Ga0059261_0328at 311.862 kb on + strand, within Ga0059261_0328at 311.862 kb on + strand, within Ga0059261_0328at 311.862 kb on + strand, within Ga0059261_0328at 311.862 kb on + strand, within Ga0059261_0328at 311.863 kb on - strand, within Ga0059261_0328at 311.863 kb on - strand, within Ga0059261_0328at 311.863 kb on - strand, within Ga0059261_0328at 311.863 kb on - strand, within Ga0059261_0328at 312.090 kb on + strand, within Ga0059261_0328at 312.090 kb on + strand, within Ga0059261_0328at 312.090 kb on + strand, within Ga0059261_0328at 312.090 kb on + strand, within Ga0059261_0328at 312.090 kb on + strand, within Ga0059261_0328at 312.091 kb on - strand, within Ga0059261_0328at 312.091 kb on - strand, within Ga0059261_0328at 312.091 kb on - strand, within Ga0059261_0328at 312.201 kb on + strand, within Ga0059261_0328at 312.201 kb on + strand, within Ga0059261_0328at 312.201 kb on + strand, within Ga0059261_0328at 312.201 kb on + strand, within Ga0059261_0328at 312.202 kb on - strand, within Ga0059261_0328at 312.202 kb on - strand, within Ga0059261_0328at 312.202 kb on - strand, within Ga0059261_0328at 312.202 kb on - strand, within Ga0059261_0328at 312.202 kb on - strand, within Ga0059261_0328at 312.321 kb on + strandat 312.321 kb on + strandat 312.322 kb on - strandat 312.322 kb on - strandat 312.322 kb on - strandat 312.351 kb on + strandat 312.351 kb on + strandat 312.352 kb on - strandat 312.352 kb on - strandat 312.352 kb on - strandat 312.734 kb on + strand, within Ga0059261_0329at 312.734 kb on + strand, within Ga0059261_0329at 312.735 kb on - strand, within Ga0059261_0329at 312.736 kb on + strand, within Ga0059261_0329at 312.736 kb on + strand, within Ga0059261_0329at 312.736 kb on + strand, within Ga0059261_0329at 312.736 kb on + strand, within Ga0059261_0329at 312.736 kb on + strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strandat 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.737 kb on - strand, within Ga0059261_0329at 312.815 kb on + strand, within Ga0059261_0329at 312.815 kb on + strand, within Ga0059261_0329at 312.816 kb on - strand, within Ga0059261_0329at 312.816 kb on - strand, within Ga0059261_0329at 312.816 kb on - strand, within Ga0059261_0329at 312.851 kb on + strand, within Ga0059261_0329at 312.852 kb on - strandat 312.853 kb on + strand, within Ga0059261_0329at 312.853 kb on + strand, within Ga0059261_0329at 312.853 kb on + strand, within Ga0059261_0329at 312.854 kb on - strand, within Ga0059261_0329at 312.854 kb on - strand, within Ga0059261_0329at 312.854 kb on - strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.088 kb on + strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strandat 313.089 kb on - strand, within Ga0059261_0329at 313.089 kb on - strand, within Ga0059261_0329at 313.130 kb on + strand, within Ga0059261_0329at 313.144 kb on + strand, within Ga0059261_0329at 313.144 kb on + strand, within Ga0059261_0329at 313.144 kb on + strand, within Ga0059261_0329at 313.194 kb on - strand, within Ga0059261_0329at 313.194 kb on - strand, within Ga0059261_0329at 313.316 kb on - strand, within Ga0059261_0329

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
remove
310,600 + Ga0059261_0327 0.52 +0.9
310,600 + Ga0059261_0327 0.52 -0.1
310,600 + Ga0059261_0327 0.52 -0.1
310,600 + Ga0059261_0327 0.52 -0.5
310,601 - Ga0059261_0327 0.52 -1.1
310,601 - Ga0059261_0327 0.52 +1.2
310,601 - Ga0059261_0327 0.52 +0.1
310,601 - Ga0059261_0327 0.52 +0.2
310,601 - Ga0059261_0327 0.52 +0.1
310,601 - Ga0059261_0327 0.52 +1.2
310,737 + Ga0059261_0327 0.59 +0.1
310,803 + Ga0059261_0327 0.63 +0.1
310,804 - Ga0059261_0327 0.63 +0.4
310,804 - Ga0059261_0327 0.63 -0.1
310,804 - Ga0059261_0327 0.63 +0.2
310,804 - Ga0059261_0327 0.63 -0.9
310,804 - Ga0059261_0327 0.63 +1.5
310,804 - Ga0059261_0327 0.63 -0.1
310,804 - Ga0059261_0327 0.63 +0.1
310,804 - Ga0059261_0327 0.63 -1.0
310,888 - Ga0059261_0327 0.67 -2.3
310,968 + Ga0059261_0327 0.72 +0.9
310,968 + Ga0059261_0327 0.72 -1.4
310,969 - Ga0059261_0327 0.72 -0.1
310,969 - Ga0059261_0327 0.72 +2.3
310,969 - Ga0059261_0327 0.72 -0.1
310,969 - Ga0059261_0327 0.72 +0.8
310,969 - Ga0059261_0327 0.72 -0.1
310,969 - Ga0059261_0327 0.72 +0.1
311,007 + Ga0059261_0327 0.74 +0.3
311,008 - Ga0059261_0327 0.74 +0.6
311,125 + Ga0059261_0327 0.80 -0.1
311,125 + Ga0059261_0327 0.80 -0.5
311,125 + Ga0059261_0327 0.80 -0.2
311,125 + Ga0059261_0327 0.80 -1.3
311,125 + Ga0059261_0327 0.80 -0.4
311,126 - Ga0059261_0327 0.80 +0.9
311,126 - Ga0059261_0327 0.80 +0.3
311,126 - Ga0059261_0327 0.80 +0.6
311,126 - Ga0059261_0327 0.80 +0.4
311,126 - Ga0059261_0327 0.80 +0.1
311,228 + Ga0059261_0327 0.86 -2.1
311,228 + Ga0059261_0327 0.86 -0.2
311,228 + Ga0059261_0327 0.86 -0.9
311,229 - Ga0059261_0327 0.86 +0.7
311,229 - Ga0059261_0327 0.86 +0.4
311,229 - Ga0059261_0327 0.86 -0.8
311,283 + Ga0059261_0327 0.88 -0.2
311,283 + Ga0059261_0327 0.88 +0.3
311,283 + Ga0059261_0327 0.88 -0.5
311,284 - Ga0059261_0327 0.89 -0.1
311,284 - Ga0059261_0327 0.89 -0.0
311,284 - Ga0059261_0327 0.89 +0.3
311,284 - Ga0059261_0327 0.89 -0.2
311,284 - Ga0059261_0327 0.89 -0.3
311,284 - Ga0059261_0327 0.89 -0.1
311,284 - Ga0059261_0327 0.89 -0.1
311,422 + +1.0
311,423 - +0.1
311,440 + +0.6
311,440 + +0.2
311,441 - +0.3
311,441 - +0.5
311,562 + -1.4
311,592 - Ga0059261_0328 0.11 +0.5
311,707 - Ga0059261_0328 0.24 +0.1
311,770 + Ga0059261_0328 0.31 +0.3
311,770 + Ga0059261_0328 0.31 +1.0
311,770 + Ga0059261_0328 0.31 +0.1
311,770 + Ga0059261_0328 0.31 +0.2
311,771 - Ga0059261_0328 0.31 +1.5
311,771 - Ga0059261_0328 0.31 -0.7
311,772 + Ga0059261_0328 0.31 -0.3
311,772 + Ga0059261_0328 0.31 +0.2
311,772 + Ga0059261_0328 0.31 -0.7
311,772 + Ga0059261_0328 0.31 +0.2
311,773 - Ga0059261_0328 0.31 -0.0
311,773 - Ga0059261_0328 0.31 -0.0
311,773 - Ga0059261_0328 0.31 +0.5
311,773 - Ga0059261_0328 0.31 +0.4
311,788 + Ga0059261_0328 0.33 +0.2
311,862 + Ga0059261_0328 0.41 +0.1
311,862 + Ga0059261_0328 0.41 -0.2
311,862 + Ga0059261_0328 0.41 +0.5
311,862 + Ga0059261_0328 0.41 +0.3
311,863 - Ga0059261_0328 0.41 +0.9
311,863 - Ga0059261_0328 0.41 +0.1
311,863 - Ga0059261_0328 0.41 -1.3
311,863 - Ga0059261_0328 0.41 +0.1
312,090 + Ga0059261_0328 0.67 +1.6
312,090 + Ga0059261_0328 0.67 +0.5
312,090 + Ga0059261_0328 0.67 +0.3
312,090 + Ga0059261_0328 0.67 +0.0
312,090 + Ga0059261_0328 0.67 +0.2
312,091 - Ga0059261_0328 0.67 -1.1
312,091 - Ga0059261_0328 0.67 +0.4
312,091 - Ga0059261_0328 0.67 +0.3
312,201 + Ga0059261_0328 0.80 -0.4
312,201 + Ga0059261_0328 0.80 -0.3
312,201 + Ga0059261_0328 0.80 -0.2
312,201 + Ga0059261_0328 0.80 -0.8
312,202 - Ga0059261_0328 0.80 +0.2
312,202 - Ga0059261_0328 0.80 +0.4
312,202 - Ga0059261_0328 0.80 +1.5
312,202 - Ga0059261_0328 0.80 -0.2
312,202 - Ga0059261_0328 0.80 +0.2
312,321 + +0.3
312,321 + -1.1
312,322 - -0.1
312,322 - +0.2
312,322 - -0.4
312,351 + -0.0
312,351 + +0.5
312,352 - +0.3
312,352 - -0.0
312,352 - +0.3
312,734 + Ga0059261_0329 0.18 +1.3
312,734 + Ga0059261_0329 0.18 -0.6
312,735 - Ga0059261_0329 0.18 +0.0
312,736 + Ga0059261_0329 0.18 -0.5
312,736 + Ga0059261_0329 0.18 +0.1
312,736 + Ga0059261_0329 0.18 -0.1
312,736 + Ga0059261_0329 0.18 +0.1
312,736 + Ga0059261_0329 0.18 +0.3
312,737 - Ga0059261_0329 0.18 +0.7
312,737 - Ga0059261_0329 0.18 +0.6
312,737 - Ga0059261_0329 0.18 +0.5
312,737 - Ga0059261_0329 0.18 -0.3
312,737 - Ga0059261_0329 0.18 +1.1
312,737 - +0.9
312,737 - Ga0059261_0329 0.18 +1.5
312,737 - Ga0059261_0329 0.18 +0.3
312,737 - Ga0059261_0329 0.18 +0.2
312,737 - Ga0059261_0329 0.18 -0.4
312,737 - Ga0059261_0329 0.18 +0.1
312,737 - Ga0059261_0329 0.18 +0.4
312,815 + Ga0059261_0329 0.22 +0.1
312,815 + Ga0059261_0329 0.22 -0.3
312,816 - Ga0059261_0329 0.22 -0.1
312,816 - Ga0059261_0329 0.22 -0.1
312,816 - Ga0059261_0329 0.22 -1.1
312,851 + Ga0059261_0329 0.24 -0.7
312,852 - +0.3
312,853 + Ga0059261_0329 0.24 -0.4
312,853 + Ga0059261_0329 0.24 +0.9
312,853 + Ga0059261_0329 0.24 -0.5
312,854 - Ga0059261_0329 0.24 +1.2
312,854 - Ga0059261_0329 0.24 -0.1
312,854 - Ga0059261_0329 0.24 -0.2
313,088 + Ga0059261_0329 0.37 -0.6
313,088 + Ga0059261_0329 0.37 -0.5
313,088 + Ga0059261_0329 0.37 -0.2
313,088 + Ga0059261_0329 0.37 +0.7
313,088 + Ga0059261_0329 0.37 -0.7
313,088 + Ga0059261_0329 0.37 +0.4
313,088 + Ga0059261_0329 0.37 -0.4
313,088 + Ga0059261_0329 0.37 -0.2
313,088 + Ga0059261_0329 0.37 -0.2
313,088 + Ga0059261_0329 0.37 -0.9
313,088 + Ga0059261_0329 0.37 +0.5
313,088 + Ga0059261_0329 0.37 +0.0
313,088 + Ga0059261_0329 0.37 +0.9
313,088 + Ga0059261_0329 0.37 -1.7
313,088 + Ga0059261_0329 0.37 +0.3
313,088 + Ga0059261_0329 0.37 -0.1
313,089 - Ga0059261_0329 0.37 +0.1
313,089 - Ga0059261_0329 0.37 -0.3
313,089 - Ga0059261_0329 0.37 -0.9
313,089 - Ga0059261_0329 0.37 -0.3
313,089 - Ga0059261_0329 0.37 -0.1
313,089 - Ga0059261_0329 0.37 +0.9
313,089 - Ga0059261_0329 0.37 +0.6
313,089 - Ga0059261_0329 0.37 +0.9
313,089 - Ga0059261_0329 0.37 -0.6
313,089 - +1.9
313,089 - Ga0059261_0329 0.37 -0.1
313,089 - Ga0059261_0329 0.37 +0.3
313,130 + Ga0059261_0329 0.39 +0.3
313,144 + Ga0059261_0329 0.40 -0.6
313,144 + Ga0059261_0329 0.40 +1.2
313,144 + Ga0059261_0329 0.40 +0.5
313,194 - Ga0059261_0329 0.42 +0.6
313,194 - Ga0059261_0329 0.42 +0.6
313,316 - Ga0059261_0329 0.49 +0.3

Or see this region's nucleotide sequence