Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03418 and CCNA_03419 are separated by 94 nucleotides CCNA_03419 and CCNA_03420 overlap by 11 nucleotides CCNA_03420 and CCNA_03421 are separated by 111 nucleotides
CCNA_03418: CCNA_03418 - thioesterase superfamily protein, at 3,584,768 to 3,585,241
_03418
CCNA_03419: CCNA_03419 - RNA polymerase ECF-type sigma factor, at 3,585,336 to 3,585,836
_03419
CCNA_03420: CCNA_03420 - hypothetical protein, at 3,585,826 to 3,586,425
_03420
CCNA_03421: CCNA_03421 - 2-polyprenylphenol 6-hydroxylase accessory protein ubiB, at 3,586,537 to 3,587,892
_03421
Position (kb)
3585
3586
3587 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3584.854 kb on - strand, within CCNA_03418 at 3584.865 kb on + strand, within CCNA_03418 at 3584.873 kb on - strand, within CCNA_03418 at 3584.883 kb on + strand, within CCNA_03418 at 3584.883 kb on + strand, within CCNA_03418 at 3584.891 kb on + strand, within CCNA_03418 at 3584.899 kb on + strand, within CCNA_03418 at 3584.907 kb on - strand, within CCNA_03418 at 3584.925 kb on + strand, within CCNA_03418 at 3584.933 kb on - strand, within CCNA_03418 at 3584.952 kb on + strand, within CCNA_03418 at 3584.980 kb on + strand, within CCNA_03418 at 3585.017 kb on - strand, within CCNA_03418 at 3585.052 kb on - strand, within CCNA_03418 at 3585.063 kb on + strand, within CCNA_03418 at 3585.073 kb on + strand, within CCNA_03418 at 3585.076 kb on - strand, within CCNA_03418 at 3585.113 kb on + strand, within CCNA_03418 at 3585.118 kb on + strand, within CCNA_03418 at 3585.119 kb on + strand, within CCNA_03418 at 3585.119 kb on + strand, within CCNA_03418 at 3585.119 kb on + strand, within CCNA_03418 at 3585.121 kb on - strand, within CCNA_03418 at 3585.127 kb on - strand, within CCNA_03418 at 3585.143 kb on - strand, within CCNA_03418 at 3585.177 kb on + strand, within CCNA_03418 at 3585.187 kb on - strand, within CCNA_03418 at 3585.213 kb on + strand at 3585.213 kb on + strand at 3585.213 kb on + strand at 3585.221 kb on - strand at 3585.221 kb on - strand at 3585.221 kb on - strand at 3585.294 kb on + strand at 3585.304 kb on + strand at 3585.305 kb on + strand at 3585.305 kb on + strand at 3585.305 kb on + strand at 3585.313 kb on - strand at 3585.313 kb on - strand at 3585.313 kb on - strand at 3585.328 kb on + strand at 3585.333 kb on + strand at 3585.387 kb on + strand, within CCNA_03419 at 3585.402 kb on + strand, within CCNA_03419 at 3585.410 kb on - strand, within CCNA_03419 at 3585.410 kb on - strand, within CCNA_03419 at 3585.419 kb on + strand, within CCNA_03419 at 3585.439 kb on - strand, within CCNA_03419 at 3585.462 kb on - strand, within CCNA_03419 at 3585.501 kb on + strand, within CCNA_03419 at 3585.501 kb on + strand, within CCNA_03419 at 3585.501 kb on + strand, within CCNA_03419 at 3585.533 kb on - strand, within CCNA_03419 at 3585.545 kb on - strand, within CCNA_03419 at 3585.551 kb on - strand, within CCNA_03419 at 3585.580 kb on + strand, within CCNA_03419 at 3585.587 kb on + strand, within CCNA_03419 at 3585.588 kb on - strand, within CCNA_03419 at 3585.600 kb on + strand, within CCNA_03419 at 3585.600 kb on + strand, within CCNA_03419 at 3585.608 kb on - strand, within CCNA_03419 at 3585.632 kb on - strand, within CCNA_03419 at 3585.641 kb on + strand, within CCNA_03419 at 3585.645 kb on + strand, within CCNA_03419 at 3585.647 kb on - strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.691 kb on + strand, within CCNA_03419 at 3585.748 kb on + strand, within CCNA_03419 at 3585.761 kb on - strand, within CCNA_03419 at 3585.774 kb on + strand, within CCNA_03419 at 3585.885 kb on + strand at 3585.885 kb on + strand at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.900 kb on + strand, within CCNA_03420 at 3585.910 kb on + strand, within CCNA_03420 at 3585.920 kb on + strand, within CCNA_03420 at 3585.920 kb on + strand, within CCNA_03420 at 3585.941 kb on - strand, within CCNA_03420 at 3585.946 kb on + strand, within CCNA_03420 at 3585.966 kb on + strand, within CCNA_03420 at 3586.000 kb on + strand, within CCNA_03420 at 3586.000 kb on + strand, within CCNA_03420 at 3586.008 kb on - strand, within CCNA_03420 at 3586.022 kb on + strand, within CCNA_03420 at 3586.022 kb on + strand, within CCNA_03420 at 3586.033 kb on + strand, within CCNA_03420 at 3586.046 kb on + strand, within CCNA_03420 at 3586.154 kb on + strand, within CCNA_03420 at 3586.154 kb on + strand, within CCNA_03420 at 3586.198 kb on + strand, within CCNA_03420 at 3586.206 kb on + strand, within CCNA_03420 at 3586.234 kb on + strand, within CCNA_03420 at 3586.260 kb on + strand, within CCNA_03420 at 3586.268 kb on - strand, within CCNA_03420 at 3586.278 kb on + strand, within CCNA_03420 at 3586.287 kb on - strand, within CCNA_03420 at 3586.319 kb on + strand, within CCNA_03420 at 3586.371 kb on + strand at 3586.420 kb on + strand at 3586.420 kb on + strand at 3586.420 kb on + strand at 3586.428 kb on - strand at 3586.428 kb on - strand at 3586.461 kb on + strand at 3586.469 kb on - strand at 3586.469 kb on - strand at 3586.469 kb on - strand at 3586.494 kb on + strand at 3586.560 kb on + strand at 3586.585 kb on - strand at 3586.585 kb on - strand at 3586.585 kb on - strand at 3586.595 kb on - strand at 3586.597 kb on + strand at 3586.597 kb on + strand at 3586.605 kb on - strand at 3586.628 kb on + strand at 3586.755 kb on - strand, within CCNA_03421 at 3586.764 kb on + strand, within CCNA_03421 at 3586.787 kb on - strand, within CCNA_03421 at 3586.795 kb on - strand, within CCNA_03421 at 3586.813 kb on + strand, within CCNA_03421 at 3586.813 kb on + strand, within CCNA_03421 at 3586.821 kb on - strand, within CCNA_03421 at 3586.852 kb on - strand, within CCNA_03421 at 3586.861 kb on + strand, within CCNA_03421 at 3586.869 kb on - strand, within CCNA_03421 at 3586.869 kb on - strand, within CCNA_03421 at 3586.873 kb on + strand, within CCNA_03421 at 3586.878 kb on + strand, within CCNA_03421 at 3586.878 kb on + strand, within CCNA_03421 at 3586.881 kb on - strand, within CCNA_03421 at 3586.904 kb on + strand at 3586.904 kb on + strand, within CCNA_03421 at 3586.904 kb on + strand, within CCNA_03421 at 3586.904 kb on + strand, within CCNA_03421 at 3586.904 kb on + strand, within CCNA_03421 at 3586.912 kb on - strand, within CCNA_03421 at 3586.912 kb on - strand, within CCNA_03421 at 3586.912 kb on - strand, within CCNA_03421 at 3586.912 kb on - strand, within CCNA_03421 at 3586.912 kb on - strand, within CCNA_03421 at 3586.914 kb on + strand, within CCNA_03421 at 3586.922 kb on - strand, within CCNA_03421 at 3586.922 kb on - strand, within CCNA_03421 at 3586.922 kb on - strand, within CCNA_03421 at 3586.924 kb on + strand, within CCNA_03421 at 3586.934 kb on - strand, within CCNA_03421 at 3586.948 kb on + strand, within CCNA_03421 at 3586.951 kb on - strand, within CCNA_03421 at 3586.951 kb on - strand, within CCNA_03421 at 3587.010 kb on + strand, within CCNA_03421 at 3587.048 kb on + strand, within CCNA_03421 at 3587.050 kb on - strand, within CCNA_03421 at 3587.086 kb on + strand, within CCNA_03421 at 3587.094 kb on - strand, within CCNA_03421 at 3587.094 kb on - strand, within CCNA_03421 at 3587.094 kb on - strand, within CCNA_03421 at 3587.128 kb on - strand, within CCNA_03421 at 3587.153 kb on + strand, within CCNA_03421 at 3587.153 kb on + strand, within CCNA_03421 at 3587.161 kb on + strand, within CCNA_03421 at 3587.177 kb on - strand, within CCNA_03421 at 3587.177 kb on - strand, within CCNA_03421 at 3587.210 kb on + strand, within CCNA_03421 at 3587.210 kb on + strand, within CCNA_03421 at 3587.229 kb on + strand, within CCNA_03421 at 3587.237 kb on + strand, within CCNA_03421 at 3587.237 kb on - strand, within CCNA_03421 at 3587.258 kb on + strand, within CCNA_03421 at 3587.270 kb on + strand, within CCNA_03421 at 3587.278 kb on - strand, within CCNA_03421 at 3587.286 kb on + strand, within CCNA_03421 at 3587.305 kb on + strand, within CCNA_03421 at 3587.313 kb on - strand, within CCNA_03421 at 3587.313 kb on - strand, within CCNA_03421 at 3587.313 kb on - strand, within CCNA_03421 at 3587.337 kb on + strand, within CCNA_03421 at 3587.359 kb on - strand, within CCNA_03421 at 3587.375 kb on + strand, within CCNA_03421 at 3587.383 kb on - strand, within CCNA_03421 at 3587.383 kb on - strand, within CCNA_03421 at 3587.383 kb on - strand, within CCNA_03421 at 3587.383 kb on - strand, within CCNA_03421 at 3587.414 kb on - strand, within CCNA_03421 at 3587.416 kb on + strand, within CCNA_03421
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 3,584,854 - CCNA_03418 0.18 -1.3 3,584,865 + CCNA_03418 0.20 -0.4 3,584,873 - CCNA_03418 0.22 -1.2 3,584,883 + CCNA_03418 0.24 -2.1 3,584,883 + CCNA_03418 0.24 +1.1 3,584,891 + CCNA_03418 0.26 -2.8 3,584,899 + CCNA_03418 0.28 -2.4 3,584,907 - CCNA_03418 0.29 -1.2 3,584,925 + CCNA_03418 0.33 +0.9 3,584,933 - CCNA_03418 0.35 -0.7 3,584,952 + CCNA_03418 0.39 -0.8 3,584,980 + CCNA_03418 0.45 +0.3 3,585,017 - CCNA_03418 0.53 +1.3 3,585,052 - CCNA_03418 0.60 -0.5 3,585,063 + CCNA_03418 0.62 -1.1 3,585,073 + CCNA_03418 0.64 -0.3 3,585,076 - CCNA_03418 0.65 +0.3 3,585,113 + CCNA_03418 0.73 -0.1 3,585,118 + CCNA_03418 0.74 +0.5 3,585,119 + CCNA_03418 0.74 -0.4 3,585,119 + CCNA_03418 0.74 +0.2 3,585,119 + CCNA_03418 0.74 -1.2 3,585,121 - CCNA_03418 0.74 -0.9 3,585,127 - CCNA_03418 0.76 +0.8 3,585,143 - CCNA_03418 0.79 -1.8 3,585,177 + CCNA_03418 0.86 -1.2 3,585,187 - CCNA_03418 0.88 +1.0 3,585,213 + -1.4 3,585,213 + -0.1 3,585,213 + -1.0 3,585,221 - -0.4 3,585,221 - -0.9 3,585,221 - +1.9 3,585,294 + -2.2 3,585,304 + -0.5 3,585,305 + -1.1 3,585,305 + +0.5 3,585,305 + -2.1 3,585,313 - +0.5 3,585,313 - +0.4 3,585,313 - -0.7 3,585,328 + -1.2 3,585,333 + -1.7 3,585,387 + CCNA_03419 0.10 -1.1 3,585,402 + CCNA_03419 0.13 -2.4 3,585,410 - CCNA_03419 0.15 +0.9 3,585,410 - CCNA_03419 0.15 -0.4 3,585,419 + CCNA_03419 0.17 -1.2 3,585,439 - CCNA_03419 0.21 +1.4 3,585,462 - CCNA_03419 0.25 +0.9 3,585,501 + CCNA_03419 0.33 +1.6 3,585,501 + CCNA_03419 0.33 -0.5 3,585,501 + CCNA_03419 0.33 -0.4 3,585,533 - CCNA_03419 0.39 -1.0 3,585,545 - CCNA_03419 0.42 -2.1 3,585,551 - CCNA_03419 0.43 -2.7 3,585,580 + CCNA_03419 0.49 -0.5 3,585,587 + CCNA_03419 0.50 -0.7 3,585,588 - CCNA_03419 0.50 -0.1 3,585,600 + CCNA_03419 0.53 -0.4 3,585,600 + CCNA_03419 0.53 -2.0 3,585,608 - CCNA_03419 0.54 -0.2 3,585,632 - CCNA_03419 0.59 +0.9 3,585,641 + CCNA_03419 0.61 -1.9 3,585,645 + CCNA_03419 0.62 +0.3 3,585,647 - CCNA_03419 0.62 -1.5 3,585,650 + CCNA_03419 0.63 -1.2 3,585,650 + CCNA_03419 0.63 -0.8 3,585,650 + CCNA_03419 0.63 -1.1 3,585,650 + CCNA_03419 0.63 -3.6 3,585,650 + CCNA_03419 0.63 +1.9 3,585,658 - CCNA_03419 0.64 -0.4 3,585,658 - CCNA_03419 0.64 -0.4 3,585,658 - CCNA_03419 0.64 -1.0 3,585,658 - CCNA_03419 0.64 -1.4 3,585,691 + CCNA_03419 0.71 -1.5 3,585,748 + CCNA_03419 0.82 +0.3 3,585,761 - CCNA_03419 0.85 +0.3 3,585,774 + CCNA_03419 0.87 -0.9 3,585,885 + +2.9 3,585,885 + +2.9 3,585,886 + CCNA_03420 0.10 +3.2 3,585,886 + CCNA_03420 0.10 +3.1 3,585,886 + CCNA_03420 0.10 +2.8 3,585,886 + CCNA_03420 0.10 +2.9 3,585,886 + CCNA_03420 0.10 +2.1 3,585,900 + CCNA_03420 0.12 +2.5 3,585,910 + CCNA_03420 0.14 +3.0 3,585,920 + CCNA_03420 0.16 +2.5 3,585,920 + CCNA_03420 0.16 +2.7 3,585,941 - CCNA_03420 0.19 +0.3 3,585,946 + CCNA_03420 0.20 +2.5 3,585,966 + CCNA_03420 0.23 +2.8 3,586,000 + CCNA_03420 0.29 +2.3 3,586,000 + CCNA_03420 0.29 +0.9 3,586,008 - CCNA_03420 0.30 +0.9 3,586,022 + CCNA_03420 0.33 +3.1 3,586,022 + CCNA_03420 0.33 +2.3 3,586,033 + CCNA_03420 0.34 +2.6 3,586,046 + CCNA_03420 0.37 +2.8 3,586,154 + CCNA_03420 0.55 -0.2 3,586,154 + CCNA_03420 0.55 +1.4 3,586,198 + CCNA_03420 0.62 +2.7 3,586,206 + CCNA_03420 0.63 +3.3 3,586,234 + CCNA_03420 0.68 +2.1 3,586,260 + CCNA_03420 0.72 +0.8 3,586,268 - CCNA_03420 0.74 -1.5 3,586,278 + CCNA_03420 0.75 +0.9 3,586,287 - CCNA_03420 0.77 -0.7 3,586,319 + CCNA_03420 0.82 +2.3 3,586,371 + +3.2 3,586,420 + +0.3 3,586,420 + +1.9 3,586,420 + +0.3 3,586,428 - +0.3 3,586,428 - +0.9 3,586,461 + -1.9 3,586,469 - -0.8 3,586,469 - -0.2 3,586,469 - -1.0 3,586,494 + +0.9 3,586,560 + -0.7 3,586,585 - +0.7 3,586,585 - +0.5 3,586,585 - +2.2 3,586,595 - +1.3 3,586,597 + -0.7 3,586,597 + -1.2 3,586,605 - +0.6 3,586,628 + -1.9 3,586,755 - CCNA_03421 0.16 +0.2 3,586,764 + CCNA_03421 0.17 -0.4 3,586,787 - CCNA_03421 0.18 -1.2 3,586,795 - CCNA_03421 0.19 +1.6 3,586,813 + CCNA_03421 0.20 -0.4 3,586,813 + CCNA_03421 0.20 +0.9 3,586,821 - CCNA_03421 0.21 +0.6 3,586,852 - CCNA_03421 0.23 -0.2 3,586,861 + CCNA_03421 0.24 -0.9 3,586,869 - CCNA_03421 0.24 +1.3 3,586,869 - CCNA_03421 0.24 +0.6 3,586,873 + CCNA_03421 0.25 -1.2 3,586,878 + CCNA_03421 0.25 +0.7 3,586,878 + CCNA_03421 0.25 -1.7 3,586,881 - CCNA_03421 0.25 +1.7 3,586,904 + +0.9 3,586,904 + CCNA_03421 0.27 -0.7 3,586,904 + CCNA_03421 0.27 -1.2 3,586,904 + CCNA_03421 0.27 -0.1 3,586,904 + CCNA_03421 0.27 +0.3 3,586,912 - CCNA_03421 0.28 +0.2 3,586,912 - CCNA_03421 0.28 +0.7 3,586,912 - CCNA_03421 0.28 -1.8 3,586,912 - CCNA_03421 0.28 -2.1 3,586,912 - CCNA_03421 0.28 -0.0 3,586,914 + CCNA_03421 0.28 -1.5 3,586,922 - CCNA_03421 0.28 -0.4 3,586,922 - CCNA_03421 0.28 +0.8 3,586,922 - CCNA_03421 0.28 -0.5 3,586,924 + CCNA_03421 0.29 -0.9 3,586,934 - CCNA_03421 0.29 +0.9 3,586,948 + CCNA_03421 0.30 -1.7 3,586,951 - CCNA_03421 0.31 -0.3 3,586,951 - CCNA_03421 0.31 +0.2 3,587,010 + CCNA_03421 0.35 -2.2 3,587,048 + CCNA_03421 0.38 +0.9 3,587,050 - CCNA_03421 0.38 -1.2 3,587,086 + CCNA_03421 0.40 -1.7 3,587,094 - CCNA_03421 0.41 +0.1 3,587,094 - CCNA_03421 0.41 +0.2 3,587,094 - CCNA_03421 0.41 +1.3 3,587,128 - CCNA_03421 0.44 +0.7 3,587,153 + CCNA_03421 0.45 -2.2 3,587,153 + CCNA_03421 0.45 -2.2 3,587,161 + CCNA_03421 0.46 -1.5 3,587,177 - CCNA_03421 0.47 +1.3 3,587,177 - CCNA_03421 0.47 +0.6 3,587,210 + CCNA_03421 0.50 +0.9 3,587,210 + CCNA_03421 0.50 +0.5 3,587,229 + CCNA_03421 0.51 -0.4 3,587,237 + CCNA_03421 0.52 -0.6 3,587,237 - CCNA_03421 0.52 +0.1 3,587,258 + CCNA_03421 0.53 -0.1 3,587,270 + CCNA_03421 0.54 -1.2 3,587,278 - CCNA_03421 0.55 +0.0 3,587,286 + CCNA_03421 0.55 +0.3 3,587,305 + CCNA_03421 0.57 -0.4 3,587,313 - CCNA_03421 0.57 -0.6 3,587,313 - CCNA_03421 0.57 +1.1 3,587,313 - CCNA_03421 0.57 -0.2 3,587,337 + CCNA_03421 0.59 -1.9 3,587,359 - CCNA_03421 0.61 -0.9 3,587,375 + CCNA_03421 0.62 +1.3 3,587,383 - CCNA_03421 0.62 -0.1 3,587,383 - CCNA_03421 0.62 +2.2 3,587,383 - CCNA_03421 0.62 -0.3 3,587,383 - CCNA_03421 0.62 +0.0 3,587,414 - CCNA_03421 0.65 -1.1 3,587,416 + CCNA_03421 0.65 -1.4
Or see this region's nucleotide sequence