Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02621 and CCNA_02622 are separated by 64 nucleotides CCNA_02622 and CCNA_02623 are separated by 122 nucleotides
CCNA_02621: CCNA_02621 - CAAX amino terminal protease family, at 2,768,606 to 2,769,535
_02621
CCNA_02622: CCNA_02622 - M61 glycyl aminopeptidase, at 2,769,600 to 2,771,456
_02622
CCNA_02623: CCNA_02623 - cell division protein FtsZ, at 2,771,579 to 2,773,105
_02623
Position (kb)
2769
2770
2771
2772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2768.600 kb on - strand at 2768.604 kb on + strand at 2768.612 kb on - strand at 2768.621 kb on - strand at 2768.623 kb on + strand at 2768.636 kb on - strand at 2768.636 kb on - strand at 2768.637 kb on + strand at 2768.683 kb on - strand at 2768.688 kb on - strand at 2768.799 kb on + strand, within CCNA_02621 at 2768.807 kb on - strand, within CCNA_02621 at 2768.827 kb on + strand, within CCNA_02621 at 2768.835 kb on - strand, within CCNA_02621 at 2768.835 kb on - strand, within CCNA_02621 at 2768.836 kb on - strand, within CCNA_02621 at 2768.909 kb on - strand, within CCNA_02621 at 2768.945 kb on + strand, within CCNA_02621 at 2768.950 kb on + strand, within CCNA_02621 at 2768.958 kb on - strand, within CCNA_02621 at 2768.997 kb on - strand, within CCNA_02621 at 2769.014 kb on - strand, within CCNA_02621 at 2769.027 kb on + strand, within CCNA_02621 at 2769.035 kb on - strand, within CCNA_02621 at 2769.063 kb on + strand, within CCNA_02621 at 2769.066 kb on - strand, within CCNA_02621 at 2769.071 kb on - strand, within CCNA_02621 at 2769.107 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.185 kb on - strand, within CCNA_02621 at 2769.187 kb on + strand, within CCNA_02621 at 2769.195 kb on - strand, within CCNA_02621 at 2769.199 kb on + strand, within CCNA_02621 at 2769.200 kb on + strand, within CCNA_02621 at 2769.221 kb on + strand, within CCNA_02621 at 2769.224 kb on - strand, within CCNA_02621 at 2769.243 kb on + strand, within CCNA_02621 at 2769.251 kb on - strand, within CCNA_02621 at 2769.276 kb on - strand, within CCNA_02621 at 2769.276 kb on - strand, within CCNA_02621 at 2769.278 kb on + strand, within CCNA_02621 at 2769.296 kb on + strand, within CCNA_02621 at 2769.304 kb on - strand, within CCNA_02621 at 2769.321 kb on + strand, within CCNA_02621 at 2769.321 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.329 kb on - strand, within CCNA_02621 at 2769.329 kb on - strand, within CCNA_02621 at 2769.334 kb on + strand, within CCNA_02621 at 2769.334 kb on + strand, within CCNA_02621 at 2769.353 kb on + strand, within CCNA_02621 at 2769.356 kb on + strand, within CCNA_02621 at 2769.388 kb on + strand, within CCNA_02621 at 2769.426 kb on + strand, within CCNA_02621 at 2769.428 kb on + strand, within CCNA_02621 at 2769.443 kb on + strand at 2769.494 kb on + strand at 2769.514 kb on - strand at 2769.535 kb on + strand at 2769.535 kb on + strand at 2769.535 kb on + strand at 2769.542 kb on + strand at 2769.550 kb on - strand at 2769.550 kb on - strand at 2769.587 kb on + strand at 2769.618 kb on - strand at 2769.618 kb on - strand at 2769.635 kb on - strand at 2769.665 kb on + strand at 2769.728 kb on - strand at 2769.746 kb on - strand at 2769.774 kb on - strand at 2769.790 kb on - strand, within CCNA_02622 at 2769.790 kb on - strand, within CCNA_02622 at 2769.790 kb on - strand, within CCNA_02622 at 2769.882 kb on + strand, within CCNA_02622 at 2769.891 kb on + strand, within CCNA_02622 at 2769.899 kb on - strand, within CCNA_02622 at 2769.915 kb on - strand, within CCNA_02622 at 2769.936 kb on - strand, within CCNA_02622 at 2769.955 kb on + strand, within CCNA_02622 at 2769.955 kb on + strand, within CCNA_02622 at 2769.986 kb on + strand, within CCNA_02622 at 2769.986 kb on + strand, within CCNA_02622 at 2769.986 kb on + strand, within CCNA_02622 at 2769.994 kb on - strand, within CCNA_02622 at 2769.994 kb on - strand, within CCNA_02622 at 2769.994 kb on - strand, within CCNA_02622 at 2769.994 kb on - strand, within CCNA_02622 at 2770.028 kb on - strand, within CCNA_02622 at 2770.037 kb on + strand, within CCNA_02622 at 2770.065 kb on + strand, within CCNA_02622 at 2770.071 kb on + strand, within CCNA_02622 at 2770.081 kb on + strand, within CCNA_02622 at 2770.087 kb on + strand, within CCNA_02622 at 2770.087 kb on + strand, within CCNA_02622 at 2770.095 kb on - strand, within CCNA_02622 at 2770.095 kb on - strand, within CCNA_02622 at 2770.095 kb on - strand, within CCNA_02622 at 2770.095 kb on - strand, within CCNA_02622 at 2770.110 kb on - strand, within CCNA_02622 at 2770.110 kb on - strand, within CCNA_02622 at 2770.117 kb on + strand, within CCNA_02622 at 2770.128 kb on - strand, within CCNA_02622 at 2770.128 kb on - strand, within CCNA_02622 at 2770.220 kb on - strand, within CCNA_02622 at 2770.238 kb on + strand, within CCNA_02622 at 2770.245 kb on - strand, within CCNA_02622 at 2770.263 kb on - strand, within CCNA_02622 at 2770.273 kb on + strand, within CCNA_02622 at 2770.316 kb on + strand, within CCNA_02622 at 2770.344 kb on - strand, within CCNA_02622 at 2770.344 kb on - strand, within CCNA_02622 at 2770.346 kb on + strand, within CCNA_02622 at 2770.361 kb on - strand, within CCNA_02622 at 2770.428 kb on + strand, within CCNA_02622 at 2770.466 kb on - strand, within CCNA_02622 at 2770.473 kb on + strand, within CCNA_02622 at 2770.473 kb on + strand, within CCNA_02622 at 2770.486 kb on + strand, within CCNA_02622 at 2770.486 kb on + strand, within CCNA_02622 at 2770.494 kb on - strand, within CCNA_02622 at 2770.501 kb on + strand, within CCNA_02622 at 2770.559 kb on + strand, within CCNA_02622 at 2770.559 kb on + strand, within CCNA_02622 at 2770.559 kb on + strand at 2770.570 kb on + strand, within CCNA_02622 at 2770.581 kb on - strand, within CCNA_02622 at 2770.602 kb on - strand, within CCNA_02622 at 2770.606 kb on + strand, within CCNA_02622 at 2770.649 kb on - strand, within CCNA_02622 at 2770.658 kb on - strand, within CCNA_02622 at 2770.694 kb on - strand, within CCNA_02622 at 2770.705 kb on + strand, within CCNA_02622 at 2770.723 kb on - strand, within CCNA_02622 at 2770.744 kb on - strand, within CCNA_02622 at 2770.744 kb on - strand, within CCNA_02622 at 2770.778 kb on - strand, within CCNA_02622 at 2770.805 kb on + strand, within CCNA_02622 at 2770.819 kb on + strand, within CCNA_02622 at 2770.819 kb on + strand, within CCNA_02622 at 2770.819 kb on + strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.827 kb on - strand, within CCNA_02622 at 2770.840 kb on + strand, within CCNA_02622 at 2770.844 kb on + strand, within CCNA_02622 at 2770.867 kb on + strand, within CCNA_02622 at 2770.875 kb on - strand, within CCNA_02622 at 2770.875 kb on - strand, within CCNA_02622 at 2770.885 kb on - strand, within CCNA_02622 at 2770.904 kb on - strand, within CCNA_02622 at 2770.921 kb on + strand, within CCNA_02622 at 2770.976 kb on - strand, within CCNA_02622 at 2770.976 kb on - strand, within CCNA_02622 at 2771.036 kb on - strand, within CCNA_02622 at 2771.046 kb on + strand, within CCNA_02622 at 2771.046 kb on + strand, within CCNA_02622 at 2771.046 kb on + strand, within CCNA_02622 at 2771.046 kb on + strand, within CCNA_02622 at 2771.046 kb on + strand, within CCNA_02622 at 2771.054 kb on - strand, within CCNA_02622 at 2771.054 kb on - strand, within CCNA_02622 at 2771.054 kb on - strand, within CCNA_02622 at 2771.054 kb on - strand, within CCNA_02622 at 2771.054 kb on - strand, within CCNA_02622 at 2771.068 kb on - strand, within CCNA_02622 at 2771.101 kb on + strand, within CCNA_02622 at 2771.101 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.108 kb on + strand, within CCNA_02622 at 2771.113 kb on + strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.116 kb on - strand, within CCNA_02622 at 2771.127 kb on - strand, within CCNA_02622 at 2771.154 kb on + strand, within CCNA_02622 at 2771.154 kb on + strand, within CCNA_02622 at 2771.162 kb on - strand, within CCNA_02622 at 2771.206 kb on + strand, within CCNA_02622 at 2771.213 kb on + strand, within CCNA_02622 at 2771.243 kb on - strand, within CCNA_02622 at 2771.243 kb on - strand, within CCNA_02622 at 2771.243 kb on - strand, within CCNA_02622 at 2771.253 kb on - strand, within CCNA_02622 at 2771.265 kb on - strand, within CCNA_02622 at 2771.292 kb on + strand at 2771.292 kb on + strand at 2771.292 kb on + strand at 2771.292 kb on + strand at 2771.298 kb on - strand at 2771.298 kb on - strand at 2771.319 kb on + strand at 2771.327 kb on - strand at 2771.327 kb on - strand at 2771.364 kb on - strand at 2771.364 kb on - strand at 2771.369 kb on - strand at 2771.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 2,768,600 - -0.5 2,768,604 + -0.5 2,768,612 - +0.3 2,768,621 - -0.8 2,768,623 + +0.2 2,768,636 - -1.5 2,768,636 - +1.0 2,768,637 + -0.3 2,768,683 - -0.1 2,768,688 - +0.7 2,768,799 + CCNA_02621 0.21 +0.5 2,768,807 - CCNA_02621 0.22 -2.1 2,768,827 + CCNA_02621 0.24 +0.5 2,768,835 - CCNA_02621 0.25 -0.3 2,768,835 - CCNA_02621 0.25 -1.4 2,768,836 - CCNA_02621 0.25 +1.0 2,768,909 - CCNA_02621 0.33 +0.2 2,768,945 + CCNA_02621 0.36 -1.1 2,768,950 + CCNA_02621 0.37 -0.4 2,768,958 - CCNA_02621 0.38 +0.4 2,768,997 - CCNA_02621 0.42 -1.2 2,769,014 - CCNA_02621 0.44 -1.1 2,769,027 + CCNA_02621 0.45 -1.1 2,769,035 - CCNA_02621 0.46 -2.0 2,769,063 + CCNA_02621 0.49 +0.4 2,769,066 - CCNA_02621 0.49 -0.3 2,769,071 - CCNA_02621 0.50 -0.6 2,769,107 + CCNA_02621 0.54 +0.5 2,769,137 + CCNA_02621 0.57 -0.1 2,769,137 + CCNA_02621 0.57 +0.5 2,769,137 + CCNA_02621 0.57 -1.2 2,769,145 - CCNA_02621 0.58 -0.8 2,769,145 - CCNA_02621 0.58 -1.8 2,769,145 - CCNA_02621 0.58 -2.0 2,769,185 - CCNA_02621 0.62 +0.4 2,769,187 + CCNA_02621 0.62 +1.2 2,769,195 - CCNA_02621 0.63 -0.3 2,769,199 + CCNA_02621 0.64 -0.3 2,769,200 + CCNA_02621 0.64 -0.1 2,769,221 + CCNA_02621 0.66 +0.8 2,769,224 - CCNA_02621 0.66 +0.7 2,769,243 + CCNA_02621 0.68 -0.3 2,769,251 - CCNA_02621 0.69 -3.0 2,769,276 - CCNA_02621 0.72 -0.3 2,769,276 - CCNA_02621 0.72 -1.3 2,769,278 + CCNA_02621 0.72 +1.2 2,769,296 + CCNA_02621 0.74 -1.1 2,769,304 - CCNA_02621 0.75 +0.7 2,769,321 + CCNA_02621 0.77 -0.5 2,769,321 + CCNA_02621 0.77 +1.2 2,769,327 + CCNA_02621 0.78 +0.3 2,769,327 + CCNA_02621 0.78 +0.5 2,769,327 + CCNA_02621 0.78 -0.7 2,769,327 + CCNA_02621 0.78 +1.4 2,769,329 - CCNA_02621 0.78 +0.7 2,769,329 - CCNA_02621 0.78 +0.2 2,769,334 + CCNA_02621 0.78 +2.4 2,769,334 + CCNA_02621 0.78 +2.8 2,769,353 + CCNA_02621 0.80 +0.9 2,769,356 + CCNA_02621 0.81 +1.0 2,769,388 + CCNA_02621 0.84 +0.8 2,769,426 + CCNA_02621 0.88 +1.0 2,769,428 + CCNA_02621 0.88 +0.1 2,769,443 + -0.2 2,769,494 + +1.5 2,769,514 - -2.3 2,769,535 + +0.1 2,769,535 + +1.6 2,769,535 + -1.1 2,769,542 + +0.7 2,769,550 - -0.1 2,769,550 - +0.9 2,769,587 + +1.5 2,769,618 - +1.7 2,769,618 - +1.3 2,769,635 - +1.4 2,769,665 + -1.6 2,769,728 - +0.7 2,769,746 - +0.8 2,769,774 - +1.1 2,769,790 - CCNA_02622 0.10 +0.7 2,769,790 - CCNA_02622 0.10 +1.5 2,769,790 - CCNA_02622 0.10 +0.1 2,769,882 + CCNA_02622 0.15 +2.8 2,769,891 + CCNA_02622 0.16 -1.8 2,769,899 - CCNA_02622 0.16 +1.4 2,769,915 - CCNA_02622 0.17 -0.8 2,769,936 - CCNA_02622 0.18 +0.8 2,769,955 + CCNA_02622 0.19 +0.7 2,769,955 + CCNA_02622 0.19 +0.4 2,769,986 + CCNA_02622 0.21 +2.2 2,769,986 + CCNA_02622 0.21 -1.7 2,769,986 + CCNA_02622 0.21 -1.1 2,769,994 - CCNA_02622 0.21 -0.8 2,769,994 - CCNA_02622 0.21 +1.1 2,769,994 - CCNA_02622 0.21 -0.1 2,769,994 - CCNA_02622 0.21 -1.0 2,770,028 - CCNA_02622 0.23 +1.3 2,770,037 + CCNA_02622 0.24 -0.1 2,770,065 + CCNA_02622 0.25 -0.6 2,770,071 + CCNA_02622 0.25 -0.6 2,770,081 + CCNA_02622 0.26 +1.2 2,770,087 + CCNA_02622 0.26 -0.8 2,770,087 + CCNA_02622 0.26 -1.5 2,770,095 - CCNA_02622 0.27 +1.1 2,770,095 - CCNA_02622 0.27 +1.0 2,770,095 - CCNA_02622 0.27 +0.5 2,770,095 - CCNA_02622 0.27 +0.7 2,770,110 - CCNA_02622 0.27 -1.5 2,770,110 - CCNA_02622 0.27 +1.1 2,770,117 + CCNA_02622 0.28 -0.8 2,770,128 - CCNA_02622 0.28 +0.7 2,770,128 - CCNA_02622 0.28 +0.6 2,770,220 - CCNA_02622 0.33 +2.2 2,770,238 + CCNA_02622 0.34 +0.2 2,770,245 - CCNA_02622 0.35 -0.5 2,770,263 - CCNA_02622 0.36 -0.3 2,770,273 + CCNA_02622 0.36 -1.6 2,770,316 + CCNA_02622 0.39 -1.8 2,770,344 - CCNA_02622 0.40 +0.8 2,770,344 - CCNA_02622 0.40 +1.2 2,770,346 + CCNA_02622 0.40 +0.2 2,770,361 - CCNA_02622 0.41 -1.2 2,770,428 + CCNA_02622 0.45 +0.7 2,770,466 - CCNA_02622 0.47 +0.2 2,770,473 + CCNA_02622 0.47 +0.3 2,770,473 + CCNA_02622 0.47 -1.1 2,770,486 + CCNA_02622 0.48 -0.9 2,770,486 + CCNA_02622 0.48 -0.7 2,770,494 - CCNA_02622 0.48 -0.8 2,770,501 + CCNA_02622 0.49 +1.2 2,770,559 + CCNA_02622 0.52 -1.1 2,770,559 + CCNA_02622 0.52 +0.2 2,770,559 + +0.2 2,770,570 + CCNA_02622 0.52 +2.2 2,770,581 - CCNA_02622 0.53 +0.2 2,770,602 - CCNA_02622 0.54 +0.4 2,770,606 + CCNA_02622 0.54 -0.3 2,770,649 - CCNA_02622 0.56 +0.7 2,770,658 - CCNA_02622 0.57 -0.8 2,770,694 - CCNA_02622 0.59 +1.5 2,770,705 + CCNA_02622 0.60 -0.3 2,770,723 - CCNA_02622 0.60 +0.7 2,770,744 - CCNA_02622 0.62 +2.2 2,770,744 - CCNA_02622 0.62 -1.9 2,770,778 - CCNA_02622 0.63 +0.4 2,770,805 + CCNA_02622 0.65 +0.7 2,770,819 + CCNA_02622 0.66 -1.6 2,770,819 + CCNA_02622 0.66 -1.6 2,770,819 + CCNA_02622 0.66 +0.2 2,770,827 - CCNA_02622 0.66 -1.3 2,770,827 - CCNA_02622 0.66 +1.6 2,770,827 - CCNA_02622 0.66 -0.8 2,770,827 - CCNA_02622 0.66 +0.2 2,770,827 - CCNA_02622 0.66 +2.2 2,770,827 - CCNA_02622 0.66 -0.0 2,770,827 - CCNA_02622 0.66 -1.8 2,770,840 + CCNA_02622 0.67 +1.8 2,770,844 + CCNA_02622 0.67 +0.7 2,770,867 + CCNA_02622 0.68 -1.5 2,770,875 - CCNA_02622 0.69 +0.8 2,770,875 - CCNA_02622 0.69 -1.7 2,770,885 - CCNA_02622 0.69 +1.8 2,770,904 - CCNA_02622 0.70 -0.0 2,770,921 + CCNA_02622 0.71 -0.8 2,770,976 - CCNA_02622 0.74 -0.5 2,770,976 - CCNA_02622 0.74 +0.4 2,771,036 - CCNA_02622 0.77 -0.8 2,771,046 + CCNA_02622 0.78 -0.8 2,771,046 + CCNA_02622 0.78 +1.2 2,771,046 + CCNA_02622 0.78 -0.5 2,771,046 + CCNA_02622 0.78 -1.1 2,771,046 + CCNA_02622 0.78 +0.7 2,771,054 - CCNA_02622 0.78 -0.3 2,771,054 - CCNA_02622 0.78 +0.7 2,771,054 - CCNA_02622 0.78 -0.8 2,771,054 - CCNA_02622 0.78 +1.8 2,771,054 - CCNA_02622 0.78 +0.7 2,771,068 - CCNA_02622 0.79 +3.2 2,771,101 + CCNA_02622 0.81 -0.6 2,771,101 + CCNA_02622 0.81 -0.4 2,771,108 + CCNA_02622 0.81 -0.6 2,771,108 + CCNA_02622 0.81 -1.1 2,771,108 + CCNA_02622 0.81 +1.8 2,771,108 + CCNA_02622 0.81 -1.3 2,771,108 + CCNA_02622 0.81 +0.7 2,771,108 + CCNA_02622 0.81 -0.2 2,771,108 + CCNA_02622 0.81 +1.2 2,771,108 + CCNA_02622 0.81 +0.5 2,771,108 + CCNA_02622 0.81 +1.1 2,771,113 + CCNA_02622 0.81 -1.6 2,771,116 - CCNA_02622 0.82 +0.9 2,771,116 - CCNA_02622 0.82 -0.3 2,771,116 - CCNA_02622 0.82 -1.7 2,771,116 - CCNA_02622 0.82 -2.0 2,771,116 - CCNA_02622 0.82 -0.5 2,771,116 - CCNA_02622 0.82 +0.0 2,771,127 - CCNA_02622 0.82 +0.9 2,771,154 + CCNA_02622 0.84 +0.6 2,771,154 + CCNA_02622 0.84 -0.1 2,771,162 - CCNA_02622 0.84 +2.7 2,771,206 + CCNA_02622 0.86 +0.7 2,771,213 + CCNA_02622 0.87 -1.6 2,771,243 - CCNA_02622 0.88 +1.6 2,771,243 - CCNA_02622 0.88 -0.4 2,771,243 - CCNA_02622 0.88 +0.1 2,771,253 - CCNA_02622 0.89 +0.5 2,771,265 - CCNA_02622 0.90 +0.9 2,771,292 + +0.4 2,771,292 + -0.0 2,771,292 + +1.8 2,771,292 + +0.9 2,771,298 - -0.9 2,771,298 - +0.7 2,771,319 + +1.1 2,771,327 - -0.9 2,771,327 - +0.6 2,771,364 - +0.1 2,771,364 - +0.9 2,771,369 - +2.0 2,771,505 + -0.0
Or see this region's nucleotide sequence