Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02148

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02146 and CCNA_02147 are separated by 98 nucleotidesCCNA_02147 and CCNA_02148 are separated by 74 nucleotidesCCNA_02148 and CCNA_02149 are separated by 153 nucleotides CCNA_02146: CCNA_02146 - hypothetical protein, at 2,303,983 to 2,304,447 _02146 CCNA_02147: CCNA_02147 - hypothetical protein, at 2,304,546 to 2,304,875 _02147 CCNA_02148: CCNA_02148 - hypothetical protein, at 2,304,950 to 2,305,180 _02148 CCNA_02149: CCNA_02149 - 1-deoxy-D-xylulose 5-phosphate synthase, at 2,305,334 to 2,307,256 _02149 Position (kb) 2304 2305 2306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2303.954 kb on + strandat 2303.954 kb on + strandat 2303.954 kb on + strandat 2303.973 kb on + strandat 2303.996 kb on + strandat 2304.004 kb on - strandat 2304.004 kb on - strandat 2304.061 kb on - strand, within CCNA_02146at 2304.066 kb on - strand, within CCNA_02146at 2304.076 kb on - strand, within CCNA_02146at 2304.093 kb on + strand, within CCNA_02146at 2304.123 kb on - strand, within CCNA_02146at 2304.135 kb on + strand, within CCNA_02146at 2304.156 kb on - strand, within CCNA_02146at 2304.209 kb on - strand, within CCNA_02146at 2304.246 kb on - strand, within CCNA_02146at 2304.299 kb on - strand, within CCNA_02146at 2304.309 kb on + strand, within CCNA_02146at 2304.317 kb on - strand, within CCNA_02146at 2304.317 kb on - strand, within CCNA_02146at 2304.317 kb on - strand, within CCNA_02146at 2304.349 kb on - strand, within CCNA_02146at 2304.350 kb on + strand, within CCNA_02146at 2304.354 kb on - strand, within CCNA_02146at 2304.358 kb on - strand, within CCNA_02146at 2304.415 kb on + strandat 2304.435 kb on - strandat 2304.493 kb on + strandat 2304.510 kb on + strandat 2304.525 kb on - strandat 2304.525 kb on - strandat 2304.597 kb on + strand, within CCNA_02147at 2304.606 kb on - strand, within CCNA_02147at 2304.611 kb on + strand, within CCNA_02147at 2304.620 kb on + strand, within CCNA_02147at 2304.625 kb on + strand, within CCNA_02147at 2304.625 kb on + strand, within CCNA_02147at 2304.647 kb on + strand, within CCNA_02147at 2304.655 kb on + strand, within CCNA_02147at 2304.663 kb on - strand, within CCNA_02147at 2304.673 kb on - strand, within CCNA_02147at 2304.677 kb on + strand, within CCNA_02147at 2304.685 kb on - strand, within CCNA_02147at 2304.690 kb on + strand, within CCNA_02147at 2304.727 kb on + strand, within CCNA_02147at 2304.759 kb on - strand, within CCNA_02147at 2304.773 kb on + strand, within CCNA_02147at 2304.781 kb on - strand, within CCNA_02147at 2304.787 kb on + strand, within CCNA_02147at 2304.794 kb on - strand, within CCNA_02147at 2304.856 kb on + strandat 2304.856 kb on + strandat 2304.912 kb on - strandat 2304.959 kb on + strandat 2304.976 kb on + strand, within CCNA_02148at 2304.981 kb on + strand, within CCNA_02148at 2305.005 kb on + strand, within CCNA_02148at 2305.013 kb on - strand, within CCNA_02148at 2305.013 kb on - strand, within CCNA_02148at 2305.030 kb on + strand, within CCNA_02148at 2305.030 kb on + strand, within CCNA_02148at 2305.050 kb on + strand, within CCNA_02148at 2305.050 kb on + strand, within CCNA_02148at 2305.050 kb on + strand, within CCNA_02148at 2305.053 kb on - strand, within CCNA_02148at 2305.058 kb on - strand, within CCNA_02148at 2305.058 kb on - strand, within CCNA_02148at 2305.106 kb on - strand, within CCNA_02148at 2305.106 kb on - strand, within CCNA_02148at 2305.109 kb on + strand, within CCNA_02148at 2305.196 kb on - strandat 2305.231 kb on + strandat 2305.238 kb on + strandat 2305.238 kb on + strandat 2305.243 kb on + strandat 2305.243 kb on + strandat 2305.246 kb on - strandat 2305.250 kb on + strandat 2305.260 kb on + strandat 2305.260 kb on + strandat 2305.260 kb on + strandat 2305.268 kb on - strandat 2305.338 kb on - strandat 2305.340 kb on - strandat 2305.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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2,303,954 + -0.8
2,303,954 + -2.4
2,303,954 + -1.7
2,303,973 + +0.5
2,303,996 + -0.3
2,304,004 - +0.5
2,304,004 - -0.0
2,304,061 - CCNA_02146 0.17 +0.3
2,304,066 - CCNA_02146 0.18 +0.0
2,304,076 - CCNA_02146 0.20 -1.6
2,304,093 + CCNA_02146 0.24 -0.5
2,304,123 - CCNA_02146 0.30 -1.7
2,304,135 + CCNA_02146 0.33 -2.2
2,304,156 - CCNA_02146 0.37 +0.7
2,304,209 - CCNA_02146 0.49 -1.9
2,304,246 - CCNA_02146 0.57 -1.2
2,304,299 - CCNA_02146 0.68 -0.0
2,304,309 + CCNA_02146 0.70 -2.0
2,304,317 - CCNA_02146 0.72 -0.2
2,304,317 - CCNA_02146 0.72 -0.1
2,304,317 - CCNA_02146 0.72 +2.4
2,304,349 - CCNA_02146 0.79 -1.3
2,304,350 + CCNA_02146 0.79 +0.4
2,304,354 - CCNA_02146 0.80 +0.0
2,304,358 - CCNA_02146 0.81 +0.1
2,304,415 + +1.0
2,304,435 - +0.5
2,304,493 + -0.3
2,304,510 + +2.4
2,304,525 - -1.0
2,304,525 - -1.6
2,304,597 + CCNA_02147 0.15 -0.4
2,304,606 - CCNA_02147 0.18 +0.7
2,304,611 + CCNA_02147 0.20 -1.5
2,304,620 + CCNA_02147 0.22 -0.3
2,304,625 + CCNA_02147 0.24 -2.1
2,304,625 + CCNA_02147 0.24 -1.4
2,304,647 + CCNA_02147 0.31 +0.6
2,304,655 + CCNA_02147 0.33 -0.0
2,304,663 - CCNA_02147 0.35 +2.0
2,304,673 - CCNA_02147 0.38 -1.5
2,304,677 + CCNA_02147 0.40 -0.5
2,304,685 - CCNA_02147 0.42 -0.6
2,304,690 + CCNA_02147 0.44 -1.0
2,304,727 + CCNA_02147 0.55 +0.2
2,304,759 - CCNA_02147 0.65 -2.3
2,304,773 + CCNA_02147 0.69 +1.0
2,304,781 - CCNA_02147 0.71 -0.0
2,304,787 + CCNA_02147 0.73 -2.3
2,304,794 - CCNA_02147 0.75 +1.0
2,304,856 + -0.8
2,304,856 + -0.7
2,304,912 - -0.8
2,304,959 + +0.8
2,304,976 + CCNA_02148 0.11 -0.3
2,304,981 + CCNA_02148 0.13 -0.0
2,305,005 + CCNA_02148 0.24 +2.3
2,305,013 - CCNA_02148 0.27 -2.3
2,305,013 - CCNA_02148 0.27 -2.7
2,305,030 + CCNA_02148 0.35 +0.0
2,305,030 + CCNA_02148 0.35 +0.3
2,305,050 + CCNA_02148 0.43 -3.1
2,305,050 + CCNA_02148 0.43 +0.2
2,305,050 + CCNA_02148 0.43 +2.0
2,305,053 - CCNA_02148 0.45 -1.3
2,305,058 - CCNA_02148 0.47 +3.4
2,305,058 - CCNA_02148 0.47 -1.3
2,305,106 - CCNA_02148 0.68 +0.4
2,305,106 - CCNA_02148 0.68 -2.2
2,305,109 + CCNA_02148 0.69 -0.6
2,305,196 - +1.5
2,305,231 + +0.4
2,305,238 + -1.6
2,305,238 + +1.0
2,305,243 + -1.2
2,305,243 + -1.0
2,305,246 - +1.5
2,305,250 + -2.2
2,305,260 + -0.0
2,305,260 + +0.4
2,305,260 + +2.0
2,305,268 - +2.2
2,305,338 - +2.0
2,305,340 - +2.4
2,305,385 - +2.0

Or see this region's nucleotide sequence