Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02146 and CCNA_02147 are separated by 98 nucleotides CCNA_02147 and CCNA_02148 are separated by 74 nucleotides CCNA_02148 and CCNA_02149 are separated by 153 nucleotides
CCNA_02146: CCNA_02146 - hypothetical protein, at 2,303,983 to 2,304,447
_02146
CCNA_02147: CCNA_02147 - hypothetical protein, at 2,304,546 to 2,304,875
_02147
CCNA_02148: CCNA_02148 - hypothetical protein, at 2,304,950 to 2,305,180
_02148
CCNA_02149: CCNA_02149 - 1-deoxy-D-xylulose 5-phosphate synthase, at 2,305,334 to 2,307,256
_02149
Position (kb)
2304
2305
2306 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2303.954 kb on + strand at 2303.954 kb on + strand at 2303.954 kb on + strand at 2303.973 kb on + strand at 2303.996 kb on + strand at 2304.004 kb on - strand at 2304.004 kb on - strand at 2304.061 kb on - strand, within CCNA_02146 at 2304.066 kb on - strand, within CCNA_02146 at 2304.076 kb on - strand, within CCNA_02146 at 2304.093 kb on + strand, within CCNA_02146 at 2304.123 kb on - strand, within CCNA_02146 at 2304.135 kb on + strand, within CCNA_02146 at 2304.156 kb on - strand, within CCNA_02146 at 2304.209 kb on - strand, within CCNA_02146 at 2304.246 kb on - strand, within CCNA_02146 at 2304.299 kb on - strand, within CCNA_02146 at 2304.309 kb on + strand, within CCNA_02146 at 2304.317 kb on - strand, within CCNA_02146 at 2304.317 kb on - strand, within CCNA_02146 at 2304.317 kb on - strand, within CCNA_02146 at 2304.349 kb on - strand, within CCNA_02146 at 2304.350 kb on + strand, within CCNA_02146 at 2304.354 kb on - strand, within CCNA_02146 at 2304.358 kb on - strand, within CCNA_02146 at 2304.415 kb on + strand at 2304.435 kb on - strand at 2304.493 kb on + strand at 2304.510 kb on + strand at 2304.525 kb on - strand at 2304.525 kb on - strand at 2304.597 kb on + strand, within CCNA_02147 at 2304.606 kb on - strand, within CCNA_02147 at 2304.611 kb on + strand, within CCNA_02147 at 2304.620 kb on + strand, within CCNA_02147 at 2304.625 kb on + strand, within CCNA_02147 at 2304.625 kb on + strand, within CCNA_02147 at 2304.647 kb on + strand, within CCNA_02147 at 2304.655 kb on + strand, within CCNA_02147 at 2304.663 kb on - strand, within CCNA_02147 at 2304.673 kb on - strand, within CCNA_02147 at 2304.677 kb on + strand, within CCNA_02147 at 2304.685 kb on - strand, within CCNA_02147 at 2304.690 kb on + strand, within CCNA_02147 at 2304.727 kb on + strand, within CCNA_02147 at 2304.759 kb on - strand, within CCNA_02147 at 2304.773 kb on + strand, within CCNA_02147 at 2304.781 kb on - strand, within CCNA_02147 at 2304.787 kb on + strand, within CCNA_02147 at 2304.794 kb on - strand, within CCNA_02147 at 2304.856 kb on + strand at 2304.856 kb on + strand at 2304.912 kb on - strand at 2304.959 kb on + strand at 2304.976 kb on + strand, within CCNA_02148 at 2304.981 kb on + strand, within CCNA_02148 at 2305.005 kb on + strand, within CCNA_02148 at 2305.013 kb on - strand, within CCNA_02148 at 2305.013 kb on - strand, within CCNA_02148 at 2305.030 kb on + strand, within CCNA_02148 at 2305.030 kb on + strand, within CCNA_02148 at 2305.050 kb on + strand, within CCNA_02148 at 2305.050 kb on + strand, within CCNA_02148 at 2305.050 kb on + strand, within CCNA_02148 at 2305.053 kb on - strand, within CCNA_02148 at 2305.058 kb on - strand, within CCNA_02148 at 2305.058 kb on - strand, within CCNA_02148 at 2305.106 kb on - strand, within CCNA_02148 at 2305.106 kb on - strand, within CCNA_02148 at 2305.109 kb on + strand, within CCNA_02148 at 2305.196 kb on - strand at 2305.231 kb on + strand at 2305.238 kb on + strand at 2305.238 kb on + strand at 2305.243 kb on + strand at 2305.243 kb on + strand at 2305.246 kb on - strand at 2305.250 kb on + strand at 2305.260 kb on + strand at 2305.260 kb on + strand at 2305.260 kb on + strand at 2305.268 kb on - strand at 2305.338 kb on - strand at 2305.340 kb on - strand at 2305.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 2,303,954 + -0.8 2,303,954 + -2.4 2,303,954 + -1.7 2,303,973 + +0.5 2,303,996 + -0.3 2,304,004 - +0.5 2,304,004 - -0.0 2,304,061 - CCNA_02146 0.17 +0.3 2,304,066 - CCNA_02146 0.18 +0.0 2,304,076 - CCNA_02146 0.20 -1.6 2,304,093 + CCNA_02146 0.24 -0.5 2,304,123 - CCNA_02146 0.30 -1.7 2,304,135 + CCNA_02146 0.33 -2.2 2,304,156 - CCNA_02146 0.37 +0.7 2,304,209 - CCNA_02146 0.49 -1.9 2,304,246 - CCNA_02146 0.57 -1.2 2,304,299 - CCNA_02146 0.68 -0.0 2,304,309 + CCNA_02146 0.70 -2.0 2,304,317 - CCNA_02146 0.72 -0.2 2,304,317 - CCNA_02146 0.72 -0.1 2,304,317 - CCNA_02146 0.72 +2.4 2,304,349 - CCNA_02146 0.79 -1.3 2,304,350 + CCNA_02146 0.79 +0.4 2,304,354 - CCNA_02146 0.80 +0.0 2,304,358 - CCNA_02146 0.81 +0.1 2,304,415 + +1.0 2,304,435 - +0.5 2,304,493 + -0.3 2,304,510 + +2.4 2,304,525 - -1.0 2,304,525 - -1.6 2,304,597 + CCNA_02147 0.15 -0.4 2,304,606 - CCNA_02147 0.18 +0.7 2,304,611 + CCNA_02147 0.20 -1.5 2,304,620 + CCNA_02147 0.22 -0.3 2,304,625 + CCNA_02147 0.24 -2.1 2,304,625 + CCNA_02147 0.24 -1.4 2,304,647 + CCNA_02147 0.31 +0.6 2,304,655 + CCNA_02147 0.33 -0.0 2,304,663 - CCNA_02147 0.35 +2.0 2,304,673 - CCNA_02147 0.38 -1.5 2,304,677 + CCNA_02147 0.40 -0.5 2,304,685 - CCNA_02147 0.42 -0.6 2,304,690 + CCNA_02147 0.44 -1.0 2,304,727 + CCNA_02147 0.55 +0.2 2,304,759 - CCNA_02147 0.65 -2.3 2,304,773 + CCNA_02147 0.69 +1.0 2,304,781 - CCNA_02147 0.71 -0.0 2,304,787 + CCNA_02147 0.73 -2.3 2,304,794 - CCNA_02147 0.75 +1.0 2,304,856 + -0.8 2,304,856 + -0.7 2,304,912 - -0.8 2,304,959 + +0.8 2,304,976 + CCNA_02148 0.11 -0.3 2,304,981 + CCNA_02148 0.13 -0.0 2,305,005 + CCNA_02148 0.24 +2.3 2,305,013 - CCNA_02148 0.27 -2.3 2,305,013 - CCNA_02148 0.27 -2.7 2,305,030 + CCNA_02148 0.35 +0.0 2,305,030 + CCNA_02148 0.35 +0.3 2,305,050 + CCNA_02148 0.43 -3.1 2,305,050 + CCNA_02148 0.43 +0.2 2,305,050 + CCNA_02148 0.43 +2.0 2,305,053 - CCNA_02148 0.45 -1.3 2,305,058 - CCNA_02148 0.47 +3.4 2,305,058 - CCNA_02148 0.47 -1.3 2,305,106 - CCNA_02148 0.68 +0.4 2,305,106 - CCNA_02148 0.68 -2.2 2,305,109 + CCNA_02148 0.69 -0.6 2,305,196 - +1.5 2,305,231 + +0.4 2,305,238 + -1.6 2,305,238 + +1.0 2,305,243 + -1.2 2,305,243 + -1.0 2,305,246 - +1.5 2,305,250 + -2.2 2,305,260 + -0.0 2,305,260 + +0.4 2,305,260 + +2.0 2,305,268 - +2.2 2,305,338 - +2.0 2,305,340 - +2.4 2,305,385 - +2.0
Or see this region's nucleotide sequence