Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01977

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01975 and CCNA_01976 overlap by 4 nucleotidesCCNA_01976 and CCNA_01977 are separated by 95 nucleotidesCCNA_01977 and CCNA_01978 are separated by 50 nucleotides CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900 _01975 CCNA_01976: CCNA_01976 - Indole-3-glycerol phosphate synthase, at 2,120,897 to 2,121,685 _01976 CCNA_01977: CCNA_01977 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,121,781 to 2,122,371 _01977 CCNA_01978: CCNA_01978 - methyltransferase, at 2,122,422 to 2,123,273 _01978 Position (kb) 2121 2122 2123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2120.787 kb on + strand, within CCNA_01975at 2120.787 kb on + strand, within CCNA_01975at 2120.787 kb on + strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.795 kb on - strand, within CCNA_01975at 2120.806 kb on - strandat 2120.806 kb on - strandat 2120.820 kb on + strandat 2120.843 kb on + strandat 2120.901 kb on + strandat 2120.911 kb on + strandat 2120.919 kb on - strandat 2120.965 kb on + strandat 2120.965 kb on + strandat 2121.027 kb on + strand, within CCNA_01976at 2121.098 kb on + strand, within CCNA_01976at 2121.098 kb on + strand, within CCNA_01976at 2121.098 kb on + strand, within CCNA_01976at 2121.098 kb on + strand, within CCNA_01976at 2121.122 kb on + strand, within CCNA_01976at 2121.142 kb on - strand, within CCNA_01976at 2121.168 kb on + strand, within CCNA_01976at 2121.252 kb on - strand, within CCNA_01976at 2121.346 kb on + strand, within CCNA_01976at 2121.385 kb on + strand, within CCNA_01976at 2121.396 kb on + strand, within CCNA_01976at 2121.407 kb on + strand, within CCNA_01976at 2121.452 kb on + strand, within CCNA_01976at 2121.452 kb on + strand, within CCNA_01976at 2121.524 kb on + strand, within CCNA_01976at 2121.529 kb on + strand, within CCNA_01976at 2121.607 kb on + strandat 2121.615 kb on - strandat 2121.615 kb on - strandat 2121.620 kb on - strandat 2121.620 kb on - strandat 2121.650 kb on + strandat 2121.689 kb on - strandat 2121.786 kb on - strandat 2121.799 kb on + strandat 2121.817 kb on + strandat 2121.833 kb on - strandat 2121.944 kb on + strand, within CCNA_01977at 2121.958 kb on - strand, within CCNA_01977at 2121.958 kb on - strand, within CCNA_01977at 2122.059 kb on + strand, within CCNA_01977at 2122.065 kb on + strand, within CCNA_01977at 2122.073 kb on - strand, within CCNA_01977at 2122.079 kb on + strand, within CCNA_01977at 2122.136 kb on + strand, within CCNA_01977at 2122.195 kb on + strand, within CCNA_01977at 2122.233 kb on - strand, within CCNA_01977at 2122.320 kb on - strandat 2122.345 kb on + strandat 2122.397 kb on + strandat 2122.441 kb on + strandat 2122.441 kb on + strandat 2122.441 kb on + strandat 2122.448 kb on - strandat 2122.449 kb on - strandat 2122.449 kb on - strandat 2122.466 kb on + strandat 2122.498 kb on - strandat 2122.522 kb on + strand, within CCNA_01978at 2122.534 kb on + strand, within CCNA_01978at 2122.580 kb on + strand, within CCNA_01978at 2122.614 kb on + strand, within CCNA_01978at 2122.622 kb on + strand, within CCNA_01978at 2122.622 kb on + strand, within CCNA_01978at 2122.630 kb on - strand, within CCNA_01978at 2122.630 kb on - strand, within CCNA_01978at 2122.630 kb on - strand, within CCNA_01978at 2122.630 kb on - strand, within CCNA_01978at 2122.657 kb on - strand, within CCNA_01978at 2122.659 kb on + strand, within CCNA_01978at 2122.662 kb on - strand, within CCNA_01978at 2122.811 kb on + strand, within CCNA_01978at 2122.889 kb on + strand, within CCNA_01978at 2122.951 kb on + strand, within CCNA_01978at 2123.005 kb on - strand, within CCNA_01978at 2123.042 kb on + strand, within CCNA_01978at 2123.048 kb on + strand, within CCNA_01978at 2123.063 kb on + strand, within CCNA_01978at 2123.142 kb on + strand, within CCNA_01978at 2123.143 kb on + strand, within CCNA_01978at 2123.151 kb on - strand, within CCNA_01978at 2123.169 kb on - strand, within CCNA_01978at 2123.171 kb on + strand, within CCNA_01978at 2123.171 kb on + strand, within CCNA_01978at 2123.178 kb on + strand, within CCNA_01978at 2123.179 kb on - strand, within CCNA_01978at 2123.179 kb on - strand, within CCNA_01978at 2123.179 kb on - strand, within CCNA_01978at 2123.179 kb on - strand, within CCNA_01978at 2123.179 kb on - strand, within CCNA_01978at 2123.186 kb on - strand, within CCNA_01978

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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2,120,787 + CCNA_01975 0.89 +1.1
2,120,787 + CCNA_01975 0.89 +1.3
2,120,787 + CCNA_01975 0.89 +0.2
2,120,795 - CCNA_01975 0.90 +2.2
2,120,795 - CCNA_01975 0.90 -0.8
2,120,795 - CCNA_01975 0.90 -2.1
2,120,806 - +0.7
2,120,806 - +1.2
2,120,820 + +0.7
2,120,843 + +3.4
2,120,901 + -0.1
2,120,911 + +0.8
2,120,919 - +0.2
2,120,965 + +0.9
2,120,965 + +2.2
2,121,027 + CCNA_01976 0.16 +0.4
2,121,098 + CCNA_01976 0.25 +0.0
2,121,098 + CCNA_01976 0.25 -0.4
2,121,098 + CCNA_01976 0.25 +1.2
2,121,098 + CCNA_01976 0.25 -0.6
2,121,122 + CCNA_01976 0.29 +0.8
2,121,142 - CCNA_01976 0.31 -0.8
2,121,168 + CCNA_01976 0.34 -0.3
2,121,252 - CCNA_01976 0.45 +2.9
2,121,346 + CCNA_01976 0.57 +0.7
2,121,385 + CCNA_01976 0.62 +0.4
2,121,396 + CCNA_01976 0.63 +2.3
2,121,407 + CCNA_01976 0.65 -0.0
2,121,452 + CCNA_01976 0.70 +0.5
2,121,452 + CCNA_01976 0.70 +1.0
2,121,524 + CCNA_01976 0.79 -0.3
2,121,529 + CCNA_01976 0.80 +0.8
2,121,607 + +1.2
2,121,615 - -1.6
2,121,615 - +0.2
2,121,620 - -0.1
2,121,620 - -0.3
2,121,650 + +0.5
2,121,689 - +2.2
2,121,786 - -0.9
2,121,799 + -1.2
2,121,817 + -1.1
2,121,833 - +0.9
2,121,944 + CCNA_01977 0.28 -1.5
2,121,958 - CCNA_01977 0.30 -0.3
2,121,958 - CCNA_01977 0.30 +0.2
2,122,059 + CCNA_01977 0.47 -0.8
2,122,065 + CCNA_01977 0.48 +0.1
2,122,073 - CCNA_01977 0.49 -0.8
2,122,079 + CCNA_01977 0.50 -0.8
2,122,136 + CCNA_01977 0.60 -0.8
2,122,195 + CCNA_01977 0.70 -1.7
2,122,233 - CCNA_01977 0.76 +0.7
2,122,320 - -1.2
2,122,345 + -1.2
2,122,397 + -1.1
2,122,441 + +1.1
2,122,441 + -1.0
2,122,441 + -1.5
2,122,448 - -1.7
2,122,449 - -2.0
2,122,449 - -2.9
2,122,466 + +0.6
2,122,498 - +0.0
2,122,522 + CCNA_01978 0.12 -0.3
2,122,534 + CCNA_01978 0.13 -0.7
2,122,580 + CCNA_01978 0.19 +0.7
2,122,614 + CCNA_01978 0.23 -2.0
2,122,622 + CCNA_01978 0.23 -0.2
2,122,622 + CCNA_01978 0.23 +0.4
2,122,630 - CCNA_01978 0.24 -0.9
2,122,630 - CCNA_01978 0.24 -1.6
2,122,630 - CCNA_01978 0.24 -1.5
2,122,630 - CCNA_01978 0.24 -1.1
2,122,657 - CCNA_01978 0.28 -1.1
2,122,659 + CCNA_01978 0.28 +0.8
2,122,662 - CCNA_01978 0.28 -0.3
2,122,811 + CCNA_01978 0.46 -2.4
2,122,889 + CCNA_01978 0.55 -0.3
2,122,951 + CCNA_01978 0.62 +0.2
2,123,005 - CCNA_01978 0.68 -0.2
2,123,042 + CCNA_01978 0.73 -0.7
2,123,048 + CCNA_01978 0.73 -0.1
2,123,063 + CCNA_01978 0.75 +2.2
2,123,142 + CCNA_01978 0.85 -0.8
2,123,143 + CCNA_01978 0.85 -1.9
2,123,151 - CCNA_01978 0.86 +0.7
2,123,169 - CCNA_01978 0.88 +0.4
2,123,171 + CCNA_01978 0.88 -1.2
2,123,171 + CCNA_01978 0.88 +0.2
2,123,178 + CCNA_01978 0.89 -1.5
2,123,179 - CCNA_01978 0.89 -0.6
2,123,179 - CCNA_01978 0.89 +0.9
2,123,179 - CCNA_01978 0.89 -1.7
2,123,179 - CCNA_01978 0.89 -2.6
2,123,179 - CCNA_01978 0.89 -0.1
2,123,186 - CCNA_01978 0.90 -0.8

Or see this region's nucleotide sequence