Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00729

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00728 and CCNA_00729 are separated by 94 nucleotidesCCNA_00729 and CCNA_00730 are separated by 75 nucleotides CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959 _00728 CCNA_00729: CCNA_00729 - hypothetical protein, at 785,054 to 786,358 _00729 CCNA_00730: CCNA_00730 - SkaA-family transcriptional regulator, at 786,434 to 787,201 _00730 Position (kb) 785 786 787Strain fitness (log2 ratio) -2 -1 0 1 2 3at 784.060 kb on - strand, within CCNA_00728at 784.062 kb on + strand, within CCNA_00728at 784.070 kb on - strand, within CCNA_00728at 784.085 kb on + strand, within CCNA_00728at 784.085 kb on + strand, within CCNA_00728at 784.096 kb on + strand, within CCNA_00728at 784.096 kb on + strand, within CCNA_00728at 784.104 kb on + strand, within CCNA_00728at 784.251 kb on + strand, within CCNA_00728at 784.251 kb on + strand, within CCNA_00728at 784.257 kb on + strand, within CCNA_00728at 784.257 kb on + strand, within CCNA_00728at 784.290 kb on - strand, within CCNA_00728at 784.302 kb on - strand, within CCNA_00728at 784.303 kb on - strand, within CCNA_00728at 784.309 kb on + strand, within CCNA_00728at 784.310 kb on + strand, within CCNA_00728at 784.325 kb on - strand, within CCNA_00728at 784.332 kb on + strand, within CCNA_00728at 784.333 kb on + strand, within CCNA_00728at 784.340 kb on - strand, within CCNA_00728at 784.345 kb on + strand, within CCNA_00728at 784.349 kb on + strand, within CCNA_00728at 784.366 kb on - strand, within CCNA_00728at 784.405 kb on + strand, within CCNA_00728at 784.413 kb on - strand, within CCNA_00728at 784.413 kb on - strand, within CCNA_00728at 784.426 kb on + strand, within CCNA_00728at 784.434 kb on - strand, within CCNA_00728at 784.465 kb on - strand, within CCNA_00728at 784.483 kb on - strand, within CCNA_00728at 784.532 kb on + strand, within CCNA_00728at 784.551 kb on + strand, within CCNA_00728at 784.559 kb on - strand, within CCNA_00728at 784.559 kb on - strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.610 kb on + strand, within CCNA_00728at 784.616 kb on + strand, within CCNA_00728at 784.620 kb on + strand, within CCNA_00728at 784.621 kb on + strand, within CCNA_00728at 784.634 kb on - strand, within CCNA_00728at 784.649 kb on - strand, within CCNA_00728at 784.650 kb on + strand, within CCNA_00728at 784.674 kb on - strand, within CCNA_00728at 784.675 kb on + strand, within CCNA_00728at 784.684 kb on + strand, within CCNA_00728at 784.693 kb on + strand, within CCNA_00728at 784.702 kb on - strand, within CCNA_00728at 784.706 kb on - strand, within CCNA_00728at 784.720 kb on - strand, within CCNA_00728at 784.722 kb on + strand, within CCNA_00728at 784.730 kb on - strand, within CCNA_00728at 784.787 kb on - strand, within CCNA_00728at 784.803 kb on + strand, within CCNA_00728at 784.810 kb on + strand, within CCNA_00728at 784.880 kb on - strandat 784.890 kb on - strandat 784.907 kb on - strandat 784.963 kb on - strandat 784.985 kb on + strandat 785.060 kb on + strandat 785.060 kb on - strandat 785.068 kb on - strandat 785.072 kb on - strandat 785.131 kb on + strandat 785.131 kb on + strandat 785.132 kb on + strandat 785.132 kb on + strandat 785.132 kb on + strandat 785.139 kb on - strandat 785.140 kb on - strandat 785.140 kb on - strandat 785.140 kb on - strandat 785.140 kb on - strandat 785.140 kb on - strandat 785.140 kb on - strandat 785.183 kb on - strandat 785.208 kb on + strand, within CCNA_00729at 785.208 kb on + strand, within CCNA_00729at 785.254 kb on + strand, within CCNA_00729at 785.263 kb on - strand, within CCNA_00729at 785.263 kb on - strand, within CCNA_00729at 785.263 kb on - strand, within CCNA_00729at 785.263 kb on - strand, within CCNA_00729at 785.318 kb on + strand, within CCNA_00729at 785.379 kb on - strand, within CCNA_00729at 785.381 kb on + strand, within CCNA_00729at 785.389 kb on - strand, within CCNA_00729at 785.389 kb on - strand, within CCNA_00729at 785.394 kb on - strand, within CCNA_00729at 785.416 kb on - strand, within CCNA_00729at 785.416 kb on - strand, within CCNA_00729at 785.443 kb on - strand, within CCNA_00729at 785.499 kb on - strand, within CCNA_00729at 785.499 kb on - strand, within CCNA_00729at 785.517 kb on - strand, within CCNA_00729at 785.602 kb on + strand, within CCNA_00729at 785.648 kb on - strand, within CCNA_00729at 785.691 kb on + strand, within CCNA_00729at 785.699 kb on - strand, within CCNA_00729at 785.701 kb on + strand, within CCNA_00729at 785.701 kb on + strand, within CCNA_00729at 785.709 kb on - strand, within CCNA_00729at 785.734 kb on - strand, within CCNA_00729at 785.739 kb on + strand, within CCNA_00729at 785.772 kb on + strand, within CCNA_00729at 785.782 kb on + strand, within CCNA_00729at 785.782 kb on + strand, within CCNA_00729at 785.790 kb on - strand, within CCNA_00729at 785.790 kb on - strand, within CCNA_00729at 785.801 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.820 kb on - strand, within CCNA_00729at 785.820 kb on - strand, within CCNA_00729at 785.822 kb on + strand, within CCNA_00729at 785.822 kb on + strand, within CCNA_00729at 785.848 kb on + strand, within CCNA_00729at 785.878 kb on + strand, within CCNA_00729at 785.945 kb on + strand, within CCNA_00729at 786.019 kb on + strand, within CCNA_00729at 786.022 kb on - strand, within CCNA_00729at 786.027 kb on - strand, within CCNA_00729at 786.043 kb on - strand, within CCNA_00729at 786.051 kb on + strand, within CCNA_00729at 786.059 kb on - strand, within CCNA_00729at 786.071 kb on + strand, within CCNA_00729at 786.092 kb on - strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.110 kb on - strand, within CCNA_00729at 786.116 kb on - strand, within CCNA_00729at 786.116 kb on - strand, within CCNA_00729at 786.127 kb on + strand, within CCNA_00729at 786.142 kb on + strand, within CCNA_00729at 786.187 kb on - strand, within CCNA_00729at 786.195 kb on + strand, within CCNA_00729at 786.201 kb on - strand, within CCNA_00729at 786.205 kb on - strand, within CCNA_00729at 786.233 kb on + strandat 786.262 kb on + strandat 786.269 kb on + strandat 786.269 kb on + strandat 786.269 kb on + strandat 786.277 kb on - strandat 786.277 kb on - strandat 786.312 kb on - strandat 786.329 kb on + strandat 786.329 kb on + strandat 786.329 kb on + strandat 786.337 kb on - strandat 786.337 kb on - strandat 786.337 kb on - strandat 786.340 kb on + strandat 786.340 kb on + strandat 786.348 kb on - strandat 786.348 kb on - strandat 786.375 kb on + strandat 786.381 kb on + strandat 786.392 kb on + strandat 786.395 kb on - strandat 786.395 kb on - strandat 786.400 kb on - strandat 786.400 kb on - strandat 786.449 kb on + strandat 786.476 kb on + strandat 786.488 kb on + strandat 786.488 kb on + strandat 786.523 kb on + strand, within CCNA_00730at 786.525 kb on - strand, within CCNA_00730at 786.531 kb on - strand, within CCNA_00730at 786.586 kb on + strand, within CCNA_00730at 786.595 kb on + strand, within CCNA_00730at 786.608 kb on + strand, within CCNA_00730at 786.608 kb on + strand, within CCNA_00730at 786.628 kb on + strand, within CCNA_00730at 786.628 kb on + strand, within CCNA_00730at 786.636 kb on - strand, within CCNA_00730at 786.638 kb on + strand, within CCNA_00730at 786.647 kb on - strand, within CCNA_00730at 786.647 kb on - strand, within CCNA_00730at 786.649 kb on + strand, within CCNA_00730at 786.654 kb on + strand, within CCNA_00730at 786.707 kb on + strand, within CCNA_00730at 786.725 kb on - strand, within CCNA_00730at 786.735 kb on + strand, within CCNA_00730at 786.749 kb on - strand, within CCNA_00730at 786.757 kb on + strand, within CCNA_00730at 786.757 kb on + strand, within CCNA_00730at 786.835 kb on - strand, within CCNA_00730at 786.850 kb on - strand, within CCNA_00730at 786.891 kb on - strand, within CCNA_00730at 786.897 kb on - strand, within CCNA_00730at 786.903 kb on + strand, within CCNA_00730at 786.904 kb on - strand, within CCNA_00730at 786.916 kb on + strand, within CCNA_00730at 786.922 kb on + strand, within CCNA_00730at 786.924 kb on - strand, within CCNA_00730at 786.924 kb on - strand, within CCNA_00730at 786.928 kb on + strand, within CCNA_00730at 786.928 kb on + strand, within CCNA_00730at 786.936 kb on - strand, within CCNA_00730at 786.940 kb on + strand, within CCNA_00730at 786.940 kb on + strand, within CCNA_00730at 786.948 kb on - strand, within CCNA_00730at 786.964 kb on + strand, within CCNA_00730at 786.964 kb on + strand, within CCNA_00730at 786.971 kb on + strand, within CCNA_00730at 786.972 kb on - strand, within CCNA_00730at 786.976 kb on + strand, within CCNA_00730at 787.022 kb on + strand, within CCNA_00730at 787.030 kb on - strand, within CCNA_00730at 787.032 kb on + strand, within CCNA_00730at 787.070 kb on + strand, within CCNA_00730at 787.125 kb on - strandat 787.151 kb on + strandat 787.159 kb on + strandat 787.159 kb on + strandat 787.167 kb on - strandat 787.167 kb on - strandat 787.204 kb on + strandat 787.254 kb on + strandat 787.307 kb on - strandat 787.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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784,060 - CCNA_00728 0.23 -1.9
784,062 + CCNA_00728 0.23 -1.2
784,070 - CCNA_00728 0.24 -0.6
784,085 + CCNA_00728 0.25 +0.5
784,085 + CCNA_00728 0.25 +0.7
784,096 + CCNA_00728 0.26 +1.2
784,096 + CCNA_00728 0.26 +0.4
784,104 + CCNA_00728 0.26 +0.8
784,251 + CCNA_00728 0.39 +2.8
784,251 + CCNA_00728 0.39 +0.2
784,257 + CCNA_00728 0.40 +0.5
784,257 + CCNA_00728 0.40 +1.7
784,290 - CCNA_00728 0.42 +1.7
784,302 - CCNA_00728 0.43 +0.8
784,303 - CCNA_00728 0.44 -0.3
784,309 + CCNA_00728 0.44 +0.5
784,310 + CCNA_00728 0.44 +0.3
784,325 - CCNA_00728 0.45 -0.5
784,332 + CCNA_00728 0.46 +0.5
784,333 + CCNA_00728 0.46 -0.7
784,340 - CCNA_00728 0.47 -0.2
784,345 + CCNA_00728 0.47 +0.4
784,349 + CCNA_00728 0.48 -0.7
784,366 - CCNA_00728 0.49 +0.2
784,405 + CCNA_00728 0.52 -0.3
784,413 - CCNA_00728 0.53 -0.4
784,413 - CCNA_00728 0.53 +0.0
784,426 + CCNA_00728 0.54 +1.4
784,434 - CCNA_00728 0.55 -2.2
784,465 - CCNA_00728 0.57 +0.4
784,483 - CCNA_00728 0.59 -2.1
784,532 + CCNA_00728 0.63 -0.6
784,551 + CCNA_00728 0.65 +0.3
784,559 - CCNA_00728 0.66 -0.8
784,559 - CCNA_00728 0.66 +1.4
784,563 + CCNA_00728 0.66 +0.3
784,563 + CCNA_00728 0.66 -0.4
784,563 + CCNA_00728 0.66 +3.6
784,571 - CCNA_00728 0.67 +0.1
784,571 - CCNA_00728 0.67 -0.6
784,610 + CCNA_00728 0.70 -1.9
784,616 + CCNA_00728 0.70 -0.2
784,620 + CCNA_00728 0.71 -0.3
784,621 + CCNA_00728 0.71 -0.5
784,634 - CCNA_00728 0.72 +0.1
784,649 - CCNA_00728 0.73 -1.9
784,650 + CCNA_00728 0.73 -1.4
784,674 - CCNA_00728 0.75 +2.4
784,675 + CCNA_00728 0.76 +0.4
784,684 + CCNA_00728 0.76 +1.2
784,693 + CCNA_00728 0.77 +0.4
784,702 - CCNA_00728 0.78 -2.0
784,706 - CCNA_00728 0.78 +0.2
784,720 - CCNA_00728 0.79 +0.8
784,722 + CCNA_00728 0.80 +0.8
784,730 - CCNA_00728 0.80 -1.1
784,787 - CCNA_00728 0.85 +1.4
784,803 + CCNA_00728 0.87 +0.7
784,810 + CCNA_00728 0.87 +0.4
784,880 - +0.1
784,890 - +0.4
784,907 - -2.4
784,963 - +1.1
784,985 + -1.9
785,060 + +0.0
785,060 - +0.7
785,068 - -1.5
785,072 - +0.1
785,131 + +0.1
785,131 + +1.6
785,132 + +0.8
785,132 + +1.7
785,132 + +1.0
785,139 - -0.2
785,140 - -1.4
785,140 - -1.4
785,140 - -0.1
785,140 - -1.2
785,140 - -0.3
785,140 - -0.2
785,183 - -2.0
785,208 + CCNA_00729 0.12 +0.7
785,208 + CCNA_00729 0.12 +0.3
785,254 + CCNA_00729 0.15 +1.8
785,263 - CCNA_00729 0.16 -0.9
785,263 - CCNA_00729 0.16 +0.1
785,263 - CCNA_00729 0.16 -1.1
785,263 - CCNA_00729 0.16 -0.9
785,318 + CCNA_00729 0.20 +1.1
785,379 - CCNA_00729 0.25 +0.5
785,381 + CCNA_00729 0.25 +0.4
785,389 - CCNA_00729 0.26 +1.1
785,389 - CCNA_00729 0.26 -0.4
785,394 - CCNA_00729 0.26 -1.5
785,416 - CCNA_00729 0.28 +1.4
785,416 - CCNA_00729 0.28 +0.6
785,443 - CCNA_00729 0.30 -1.2
785,499 - CCNA_00729 0.34 -2.2
785,499 - CCNA_00729 0.34 -0.6
785,517 - CCNA_00729 0.35 -0.4
785,602 + CCNA_00729 0.42 +1.2
785,648 - CCNA_00729 0.46 +0.9
785,691 + CCNA_00729 0.49 +0.4
785,699 - CCNA_00729 0.49 +1.2
785,701 + CCNA_00729 0.50 +0.3
785,701 + CCNA_00729 0.50 +0.6
785,709 - CCNA_00729 0.50 -0.2
785,734 - CCNA_00729 0.52 +1.1
785,739 + CCNA_00729 0.52 +2.1
785,772 + CCNA_00729 0.55 +3.1
785,782 + CCNA_00729 0.56 +1.4
785,782 + CCNA_00729 0.56 +1.4
785,790 - CCNA_00729 0.56 -0.4
785,790 - CCNA_00729 0.56 +0.4
785,801 + CCNA_00729 0.57 +1.1
785,812 + CCNA_00729 0.58 +2.8
785,812 + CCNA_00729 0.58 +0.8
785,812 + CCNA_00729 0.58 +1.0
785,820 - CCNA_00729 0.59 -1.4
785,820 - CCNA_00729 0.59 -2.1
785,822 + CCNA_00729 0.59 +0.8
785,822 + CCNA_00729 0.59 -0.6
785,848 + CCNA_00729 0.61 +0.2
785,878 + CCNA_00729 0.63 +1.0
785,945 + CCNA_00729 0.68 +1.1
786,019 + CCNA_00729 0.74 +1.0
786,022 - CCNA_00729 0.74 -1.2
786,027 - CCNA_00729 0.75 -2.0
786,043 - CCNA_00729 0.76 -1.5
786,051 + CCNA_00729 0.76 +0.8
786,059 - CCNA_00729 0.77 -0.2
786,071 + CCNA_00729 0.78 +1.1
786,092 - CCNA_00729 0.80 -0.2
786,108 + CCNA_00729 0.81 +0.7
786,108 + CCNA_00729 0.81 +0.1
786,108 + CCNA_00729 0.81 +0.2
786,108 + CCNA_00729 0.81 +1.3
786,110 - CCNA_00729 0.81 -0.2
786,116 - CCNA_00729 0.81 +0.8
786,116 - CCNA_00729 0.81 +0.8
786,127 + CCNA_00729 0.82 +1.9
786,142 + CCNA_00729 0.83 -0.4
786,187 - CCNA_00729 0.87 +0.3
786,195 + CCNA_00729 0.87 +1.9
786,201 - CCNA_00729 0.88 +1.1
786,205 - CCNA_00729 0.88 +0.1
786,233 + +2.3
786,262 + +1.1
786,269 + +1.7
786,269 + +1.8
786,269 + +2.4
786,277 - +2.4
786,277 - -1.2
786,312 - -1.6
786,329 + +1.7
786,329 + +1.9
786,329 + +1.9
786,337 - +0.1
786,337 - -0.5
786,337 - -1.9
786,340 + +2.2
786,340 + +1.1
786,348 - +2.4
786,348 - +0.7
786,375 + +1.1
786,381 + +3.3
786,392 + +2.1
786,395 - -1.8
786,395 - +0.8
786,400 - -0.1
786,400 - -0.9
786,449 + +0.6
786,476 + +2.6
786,488 + -0.8
786,488 + -0.4
786,523 + CCNA_00730 0.12 +0.6
786,525 - CCNA_00730 0.12 +1.4
786,531 - CCNA_00730 0.13 +0.8
786,586 + CCNA_00730 0.20 -0.3
786,595 + CCNA_00730 0.21 +0.1
786,608 + CCNA_00730 0.23 +1.2
786,608 + CCNA_00730 0.23 +1.8
786,628 + CCNA_00730 0.25 -1.2
786,628 + CCNA_00730 0.25 +0.2
786,636 - CCNA_00730 0.26 +0.4
786,638 + CCNA_00730 0.27 +1.3
786,647 - CCNA_00730 0.28 -0.2
786,647 - CCNA_00730 0.28 +0.5
786,649 + CCNA_00730 0.28 +0.7
786,654 + CCNA_00730 0.29 -0.7
786,707 + CCNA_00730 0.36 +1.4
786,725 - CCNA_00730 0.38 -0.1
786,735 + CCNA_00730 0.39 +3.4
786,749 - CCNA_00730 0.41 +0.1
786,757 + CCNA_00730 0.42 +3.1
786,757 + CCNA_00730 0.42 +3.3
786,835 - CCNA_00730 0.52 -1.1
786,850 - CCNA_00730 0.54 +1.2
786,891 - CCNA_00730 0.60 -0.2
786,897 - CCNA_00730 0.60 -0.1
786,903 + CCNA_00730 0.61 -0.0
786,904 - CCNA_00730 0.61 -0.9
786,916 + CCNA_00730 0.63 +0.2
786,922 + CCNA_00730 0.64 +0.5
786,924 - CCNA_00730 0.64 -1.1
786,924 - CCNA_00730 0.64 -1.1
786,928 + CCNA_00730 0.64 -0.0
786,928 + CCNA_00730 0.64 +2.6
786,936 - CCNA_00730 0.65 -0.6
786,940 + CCNA_00730 0.66 -0.0
786,940 + CCNA_00730 0.66 -0.5
786,948 - CCNA_00730 0.67 -0.8
786,964 + CCNA_00730 0.69 +0.4
786,964 + CCNA_00730 0.69 +0.8
786,971 + CCNA_00730 0.70 +2.4
786,972 - CCNA_00730 0.70 -1.3
786,976 + CCNA_00730 0.71 +0.5
787,022 + CCNA_00730 0.77 -0.5
787,030 - CCNA_00730 0.78 -0.8
787,032 + CCNA_00730 0.78 +0.6
787,070 + CCNA_00730 0.83 +1.4
787,125 - -0.7
787,151 + +0.8
787,159 + -1.9
787,159 + +1.1
787,167 - +1.4
787,167 - +1.4
787,204 + +0.4
787,254 + -0.4
787,307 - +1.5
787,352 + -0.2

Or see this region's nucleotide sequence