Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00403

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00401 and CCNA_00402 are separated by 3 nucleotidesCCNA_00402 and CCNA_00403 are separated by 36 nucleotidesCCNA_00403 and CCNA_00404 overlap by 1 nucleotidesCCNA_00404 and CCNA_00405 overlap by 4 nucleotides CCNA_00401: CCNA_00401 - enoyl-CoA hydratase, at 418,501 to 419,271 _00401 CCNA_00402: CCNA_00402 - hypothetical protein, at 419,275 to 419,691 _00402 CCNA_00403: CCNA_00403 - short chain dehydrogenase, at 419,728 to 420,699 _00403 CCNA_00404: CCNA_00404 - hypothetical protein, at 420,699 to 421,214 _00404 CCNA_00405: CCNA_00405 - short chain dehydrogenase, at 421,211 to 422,068 _00405 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 418.778 kb on - strand, within CCNA_00401at 418.791 kb on + strand, within CCNA_00401at 418.806 kb on + strand, within CCNA_00401at 418.814 kb on - strand, within CCNA_00401at 418.820 kb on + strand, within CCNA_00401at 418.828 kb on - strand, within CCNA_00401at 418.830 kb on - strand, within CCNA_00401at 418.837 kb on + strand, within CCNA_00401at 418.865 kb on + strand, within CCNA_00401at 418.873 kb on - strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.906 kb on - strand, within CCNA_00401at 418.909 kb on + strand, within CCNA_00401at 418.921 kb on + strand, within CCNA_00401at 418.927 kb on + strand, within CCNA_00401at 418.944 kb on - strand, within CCNA_00401at 418.955 kb on - strand, within CCNA_00401at 418.956 kb on + strand, within CCNA_00401at 418.957 kb on + strand, within CCNA_00401at 418.990 kb on + strand, within CCNA_00401at 419.003 kb on - strand, within CCNA_00401at 419.011 kb on - strand, within CCNA_00401at 419.013 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401at 419.020 kb on + strand, within CCNA_00401at 419.023 kb on - strand, within CCNA_00401at 419.041 kb on - strand, within CCNA_00401at 419.043 kb on - strand, within CCNA_00401at 419.157 kb on + strand, within CCNA_00401at 419.160 kb on + strand, within CCNA_00401at 419.160 kb on + strand, within CCNA_00401at 419.207 kb on - strandat 419.219 kb on - strandat 419.221 kb on + strandat 419.278 kb on + strandat 419.313 kb on + strandat 419.313 kb on + strandat 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.334 kb on - strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.394 kb on + strand, within CCNA_00402at 419.433 kb on - strand, within CCNA_00402at 419.433 kb on - strand, within CCNA_00402at 419.440 kb on + strand, within CCNA_00402at 419.482 kb on + strand, within CCNA_00402at 419.531 kb on + strand, within CCNA_00402at 419.573 kb on + strand, within CCNA_00402at 419.573 kb on + strand, within CCNA_00402at 419.611 kb on + strand, within CCNA_00402at 419.613 kb on + strand, within CCNA_00402at 419.663 kb on + strandat 419.670 kb on + strandat 419.671 kb on - strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.688 kb on - strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.698 kb on - strandat 419.698 kb on - strandat 419.698 kb on - strandat 419.762 kb on + strandat 419.819 kb on + strandat 419.852 kb on - strand, within CCNA_00403at 419.861 kb on + strand, within CCNA_00403at 419.866 kb on + strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.873 kb on - strand, within CCNA_00403at 419.874 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.913 kb on + strand, within CCNA_00403at 419.966 kb on + strand, within CCNA_00403at 419.985 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.998 kb on - strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.074 kb on + strand, within CCNA_00403at 420.119 kb on - strand, within CCNA_00403at 420.134 kb on + strand, within CCNA_00403at 420.255 kb on - strand, within CCNA_00403at 420.261 kb on + strandat 420.266 kb on + strand, within CCNA_00403at 420.296 kb on + strand, within CCNA_00403at 420.301 kb on + strand, within CCNA_00403at 420.303 kb on - strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.317 kb on + strand, within CCNA_00403at 420.346 kb on - strand, within CCNA_00403at 420.358 kb on - strand, within CCNA_00403at 420.365 kb on - strand, within CCNA_00403at 420.380 kb on + strand, within CCNA_00403at 420.400 kb on - strand, within CCNA_00403at 420.405 kb on - strand, within CCNA_00403at 420.428 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.450 kb on - strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.483 kb on + strand, within CCNA_00403at 420.504 kb on - strand, within CCNA_00403at 420.515 kb on + strand, within CCNA_00403at 420.516 kb on + strand, within CCNA_00403at 420.524 kb on - strand, within CCNA_00403at 420.558 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.583 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.591 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.611 kb on + strandat 420.614 kb on - strandat 420.639 kb on - strandat 420.640 kb on - strandat 420.665 kb on - strandat 420.702 kb on - strandat 420.707 kb on + strandat 420.738 kb on + strandat 420.743 kb on + strandat 420.751 kb on - strand, within CCNA_00404at 420.754 kb on - strand, within CCNA_00404at 420.810 kb on + strand, within CCNA_00404at 420.827 kb on + strand, within CCNA_00404at 420.861 kb on - strand, within CCNA_00404at 420.874 kb on - strand, within CCNA_00404at 420.874 kb on - strand, within CCNA_00404at 420.898 kb on + strand, within CCNA_00404at 420.975 kb on + strand, within CCNA_00404at 421.016 kb on + strand, within CCNA_00404at 421.024 kb on - strand, within CCNA_00404at 421.024 kb on - strand, within CCNA_00404at 421.039 kb on - strand, within CCNA_00404at 421.073 kb on - strand, within CCNA_00404at 421.114 kb on - strand, within CCNA_00404at 421.124 kb on - strand, within CCNA_00404at 421.142 kb on + strand, within CCNA_00404at 421.162 kb on + strand, within CCNA_00404at 421.177 kb on + strandat 421.177 kb on + strandat 421.185 kb on - strandat 421.187 kb on + strandat 421.195 kb on + strandat 421.205 kb on + strandat 421.214 kb on + strandat 421.230 kb on - strandat 421.257 kb on + strandat 421.262 kb on + strandat 421.265 kb on - strandat 421.265 kb on - strandat 421.267 kb on + strandat 421.270 kb on - strandat 421.286 kb on + strandat 421.309 kb on + strand, within CCNA_00405at 421.320 kb on + strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.362 kb on - strand, within CCNA_00405at 421.392 kb on + strand, within CCNA_00405at 421.424 kb on + strand, within CCNA_00405at 421.429 kb on + strand, within CCNA_00405at 421.437 kb on - strand, within CCNA_00405at 421.458 kb on - strand, within CCNA_00405at 421.471 kb on - strand, within CCNA_00405at 421.516 kb on + strand, within CCNA_00405at 421.518 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.545 kb on + strand, within CCNA_00405at 421.567 kb on - strand, within CCNA_00405at 421.597 kb on + strand, within CCNA_00405at 421.598 kb on - strand, within CCNA_00405at 421.610 kb on + strand, within CCNA_00405at 421.627 kb on + strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.660 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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418,778 - CCNA_00401 0.36 -0.1
418,791 + CCNA_00401 0.38 -0.3
418,806 + CCNA_00401 0.40 +0.7
418,814 - CCNA_00401 0.41 +1.0
418,820 + CCNA_00401 0.41 -0.3
418,828 - CCNA_00401 0.42 -0.8
418,830 - CCNA_00401 0.43 -1.3
418,837 + CCNA_00401 0.44 +1.1
418,865 + CCNA_00401 0.47 +0.0
418,873 - CCNA_00401 0.48 -2.3
418,898 + CCNA_00401 0.51 -1.0
418,898 + CCNA_00401 0.51 +1.2
418,906 - CCNA_00401 0.53 -1.0
418,909 + CCNA_00401 0.53 -1.2
418,921 + CCNA_00401 0.54 +1.9
418,927 + CCNA_00401 0.55 +0.3
418,944 - CCNA_00401 0.57 +1.3
418,955 - CCNA_00401 0.59 +0.3
418,956 + CCNA_00401 0.59 -2.4
418,957 + CCNA_00401 0.59 -1.1
418,990 + CCNA_00401 0.63 +0.6
419,003 - CCNA_00401 0.65 -0.8
419,011 - CCNA_00401 0.66 -1.8
419,013 + CCNA_00401 0.66 -0.8
419,015 + CCNA_00401 0.67 -1.6
419,015 + CCNA_00401 0.67 -0.5
419,020 + CCNA_00401 0.67 +0.3
419,023 - CCNA_00401 0.68 +1.3
419,041 - CCNA_00401 0.70 -0.5
419,043 - CCNA_00401 0.70 -1.0
419,157 + CCNA_00401 0.85 -1.4
419,160 + CCNA_00401 0.85 -0.1
419,160 + CCNA_00401 0.85 -0.6
419,207 - -1.2
419,219 - -2.0
419,221 + -1.0
419,278 + +0.4
419,313 + -0.4
419,313 + +0.0
419,326 + CCNA_00402 0.12 +1.3
419,326 + CCNA_00402 0.12 +0.0
419,326 + CCNA_00402 0.12 -0.4
419,334 - CCNA_00402 0.14 -0.5
419,368 - CCNA_00402 0.22 +1.3
419,368 - CCNA_00402 0.22 +0.3
419,394 + CCNA_00402 0.29 -1.6
419,433 - CCNA_00402 0.38 -2.6
419,433 - CCNA_00402 0.38 -1.7
419,440 + CCNA_00402 0.40 -2.3
419,482 + CCNA_00402 0.50 -0.6
419,531 + CCNA_00402 0.61 -1.3
419,573 + CCNA_00402 0.71 -0.5
419,573 + CCNA_00402 0.71 -1.5
419,611 + CCNA_00402 0.81 -0.7
419,613 + CCNA_00402 0.81 -0.5
419,663 + -1.7
419,670 + -0.7
419,671 - -0.6
419,680 + +0.9
419,680 + -0.1
419,680 + -0.8
419,680 + +0.4
419,688 - -2.1
419,690 + -0.5
419,690 + -0.5
419,690 + -2.5
419,690 + -0.2
419,690 + -0.7
419,698 - -2.0
419,698 - -1.3
419,698 - +0.9
419,762 + -2.2
419,819 + +0.3
419,852 - CCNA_00403 0.13 -1.1
419,861 + CCNA_00403 0.14 +0.9
419,866 + CCNA_00403 0.14 +0.3
419,869 - CCNA_00403 0.15 -1.7
419,869 - CCNA_00403 0.15 +0.9
419,873 - CCNA_00403 0.15 -0.7
419,874 - CCNA_00403 0.15 -1.1
419,911 - CCNA_00403 0.19 -0.5
419,911 - CCNA_00403 0.19 -0.7
419,911 - CCNA_00403 0.19 -0.7
419,911 - CCNA_00403 0.19 -1.5
419,913 + CCNA_00403 0.19 -1.5
419,966 + CCNA_00403 0.24 -1.5
419,985 + CCNA_00403 0.26 -2.1
419,990 + CCNA_00403 0.27 -1.1
419,990 + CCNA_00403 0.27 -1.3
419,990 + CCNA_00403 0.27 -0.1
419,998 - CCNA_00403 0.28 -1.9
420,018 + CCNA_00403 0.30 +1.9
420,018 + CCNA_00403 0.30 -1.8
420,018 + CCNA_00403 0.30 -0.5
420,018 + CCNA_00403 0.30 -0.5
420,018 + CCNA_00403 0.30 -2.1
420,026 - CCNA_00403 0.31 -1.6
420,026 - CCNA_00403 0.31 -0.1
420,064 + CCNA_00403 0.35 -0.3
420,064 + CCNA_00403 0.35 -0.3
420,064 + CCNA_00403 0.35 -1.0
420,064 + CCNA_00403 0.35 -0.4
420,072 - CCNA_00403 0.35 -1.0
420,072 - CCNA_00403 0.35 -0.5
420,072 - CCNA_00403 0.35 +0.3
420,074 + CCNA_00403 0.36 -1.5
420,119 - CCNA_00403 0.40 -2.0
420,134 + CCNA_00403 0.42 +1.3
420,255 - CCNA_00403 0.54 -0.1
420,261 + +0.9
420,266 + CCNA_00403 0.55 -1.3
420,296 + CCNA_00403 0.58 -1.0
420,301 + CCNA_00403 0.59 -1.3
420,303 - CCNA_00403 0.59 -1.3
420,306 + CCNA_00403 0.59 -1.0
420,306 + CCNA_00403 0.59 -1.8
420,306 + CCNA_00403 0.59 -0.1
420,306 + CCNA_00403 0.59 -0.5
420,314 - CCNA_00403 0.60 -2.7
420,314 - CCNA_00403 0.60 -2.6
420,314 - CCNA_00403 0.60 +0.1
420,314 - CCNA_00403 0.60 -2.0
420,317 + CCNA_00403 0.61 -2.5
420,346 - CCNA_00403 0.64 -0.1
420,358 - CCNA_00403 0.65 +0.3
420,365 - CCNA_00403 0.66 +0.3
420,380 + CCNA_00403 0.67 -1.1
420,400 - CCNA_00403 0.69 -2.0
420,405 - CCNA_00403 0.70 +1.9
420,428 + CCNA_00403 0.72 -1.1
420,442 + CCNA_00403 0.73 +0.7
420,442 + CCNA_00403 0.73 -0.8
420,450 - CCNA_00403 0.74 -1.1
420,481 + CCNA_00403 0.77 -2.9
420,481 + CCNA_00403 0.77 -1.3
420,483 + CCNA_00403 0.78 +1.9
420,504 - CCNA_00403 0.80 -1.1
420,515 + CCNA_00403 0.81 -0.1
420,516 + CCNA_00403 0.81 -0.9
420,524 - CCNA_00403 0.82 -0.1
420,558 + CCNA_00403 0.85 -0.7
420,563 + CCNA_00403 0.86 -0.5
420,563 + CCNA_00403 0.86 -1.8
420,563 + CCNA_00403 0.86 +1.9
420,563 + CCNA_00403 0.86 -1.1
420,563 + CCNA_00403 0.86 -2.3
420,571 - CCNA_00403 0.87 +1.4
420,571 - CCNA_00403 0.87 -0.5
420,571 - CCNA_00403 0.87 -2.3
420,571 - CCNA_00403 0.87 +0.9
420,571 - CCNA_00403 0.87 +1.9
420,583 + CCNA_00403 0.88 -0.1
420,588 + CCNA_00403 0.88 -0.7
420,588 + CCNA_00403 0.88 -2.4
420,591 - CCNA_00403 0.89 -0.2
420,596 - CCNA_00403 0.89 -2.9
420,596 - CCNA_00403 0.89 -1.3
420,596 - CCNA_00403 0.89 -0.5
420,596 - CCNA_00403 0.89 -1.2
420,596 - CCNA_00403 0.89 -1.8
420,611 + +0.4
420,614 - -1.6
420,639 - -0.7
420,640 - -0.3
420,665 - -1.5
420,702 - -1.3
420,707 + +1.6
420,738 + +1.8
420,743 + -0.0
420,751 - CCNA_00404 0.10 +2.8
420,754 - CCNA_00404 0.11 -0.4
420,810 + CCNA_00404 0.22 +1.8
420,827 + CCNA_00404 0.25 -0.4
420,861 - CCNA_00404 0.31 +1.8
420,874 - CCNA_00404 0.34 +1.8
420,874 - CCNA_00404 0.34 -0.7
420,898 + CCNA_00404 0.39 -0.7
420,975 + CCNA_00404 0.53 +0.5
421,016 + CCNA_00404 0.61 -1.0
421,024 - CCNA_00404 0.63 -0.7
421,024 - CCNA_00404 0.63 -1.7
421,039 - CCNA_00404 0.66 -1.9
421,073 - CCNA_00404 0.72 -0.5
421,114 - CCNA_00404 0.80 +1.8
421,124 - CCNA_00404 0.82 +0.8
421,142 + CCNA_00404 0.86 -1.9
421,162 + CCNA_00404 0.90 -1.9
421,177 + +0.8
421,177 + -0.2
421,185 - -2.1
421,187 + -2.2
421,195 + -1.3
421,205 + -0.5
421,214 + -2.1
421,230 - -2.6
421,257 + -0.9
421,262 + -1.2
421,265 - -1.9
421,265 - -1.2
421,267 + -0.4
421,270 - -1.0
421,286 + -0.7
421,309 + CCNA_00405 0.11 -1.5
421,320 + CCNA_00405 0.13 -0.7
421,333 - CCNA_00405 0.14 -0.2
421,333 - CCNA_00405 0.14 -0.7
421,353 - CCNA_00405 0.17 -0.5
421,353 - CCNA_00405 0.17 +1.3
421,354 + CCNA_00405 0.17 +0.8
421,354 + CCNA_00405 0.17 -0.5
421,354 + CCNA_00405 0.17 -1.0
421,354 + CCNA_00405 0.17 -1.9
421,362 - CCNA_00405 0.18 +0.8
421,392 + CCNA_00405 0.21 -0.7
421,424 + CCNA_00405 0.25 -0.5
421,429 + CCNA_00405 0.25 -0.5
421,437 - CCNA_00405 0.26 -0.5
421,458 - CCNA_00405 0.29 -1.3
421,471 - CCNA_00405 0.30 -1.4
421,516 + CCNA_00405 0.36 +0.3
421,518 + CCNA_00405 0.36 +1.3
421,523 + CCNA_00405 0.36 +1.8
421,523 + CCNA_00405 0.36 -2.2
421,545 + CCNA_00405 0.39 +1.4
421,567 - CCNA_00405 0.41 -0.3
421,597 + CCNA_00405 0.45 -1.0
421,598 - CCNA_00405 0.45 -1.0
421,610 + CCNA_00405 0.47 -0.5
421,627 + CCNA_00405 0.48 -1.9
421,646 - CCNA_00405 0.51 +0.8
421,646 - CCNA_00405 0.51 -2.3
421,660 + CCNA_00405 0.52 -1.3
421,694 + CCNA_00405 0.56 -1.2
421,694 + CCNA_00405 0.56 +0.6

Or see this region's nucleotide sequence