Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00399

Experiment: PYE with Benzethonium chloride 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00398 and CCNA_00399 are separated by 154 nucleotidesCCNA_00399 and CCNA_00400 are separated by 44 nucleotidesCCNA_00400 and CCNA_00401 overlap by 4 nucleotides CCNA_00398: CCNA_00398 - hypothetical protein, at 415,406 to 416,764 _00398 CCNA_00399: CCNA_00399 - zinc metallohydrolase, glyoxalase II family, at 416,919 to 418,016 _00399 CCNA_00400: CCNA_00400 - MarR/EmrR-family transcriptional regulator, at 418,061 to 418,504 _00400 CCNA_00401: CCNA_00401 - enoyl-CoA hydratase, at 418,501 to 419,271 _00401 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 415.925 kb on - strand, within CCNA_00398at 415.997 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.025 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.106 kb on + strand, within CCNA_00398at 416.139 kb on + strand, within CCNA_00398at 416.145 kb on - strand, within CCNA_00398at 416.146 kb on - strand, within CCNA_00398at 416.153 kb on - strand, within CCNA_00398at 416.159 kb on + strand, within CCNA_00398at 416.163 kb on - strand, within CCNA_00398at 416.195 kb on + strand, within CCNA_00398at 416.198 kb on + strand, within CCNA_00398at 416.203 kb on - strand, within CCNA_00398at 416.230 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.247 kb on + strand, within CCNA_00398at 416.255 kb on - strand, within CCNA_00398at 416.299 kb on - strand, within CCNA_00398at 416.360 kb on + strand, within CCNA_00398at 416.395 kb on + strand, within CCNA_00398at 416.397 kb on + strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.410 kb on - strand, within CCNA_00398at 416.443 kb on + strand, within CCNA_00398at 416.451 kb on - strand, within CCNA_00398at 416.453 kb on + strand, within CCNA_00398at 416.453 kb on + strand, within CCNA_00398at 416.454 kb on + strand, within CCNA_00398at 416.454 kb on + strand, within CCNA_00398at 416.459 kb on + strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.472 kb on + strand, within CCNA_00398at 416.474 kb on + strand, within CCNA_00398at 416.480 kb on - strand, within CCNA_00398at 416.506 kb on - strand, within CCNA_00398at 416.506 kb on - strand, within CCNA_00398at 416.556 kb on - strand, within CCNA_00398at 416.562 kb on - strand, within CCNA_00398at 416.600 kb on - strand, within CCNA_00398at 416.638 kb on - strandat 416.649 kb on - strandat 416.658 kb on + strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.675 kb on + strandat 416.705 kb on + strandat 416.714 kb on - strandat 416.728 kb on + strandat 416.757 kb on + strandat 416.765 kb on + strandat 416.765 kb on - strandat 416.800 kb on + strandat 416.824 kb on + strandat 416.824 kb on + strandat 416.832 kb on - strandat 416.850 kb on + strandat 416.893 kb on + strandat 416.901 kb on - strandat 416.901 kb on - strandat 416.901 kb on - strandat 416.911 kb on + strandat 416.974 kb on - strandat 416.984 kb on + strandat 417.017 kb on - strandat 417.037 kb on - strand, within CCNA_00399at 417.046 kb on - strand, within CCNA_00399at 417.066 kb on + strand, within CCNA_00399at 417.090 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.120 kb on + strand, within CCNA_00399at 417.127 kb on - strand, within CCNA_00399at 417.127 kb on - strand, within CCNA_00399at 417.152 kb on - strand, within CCNA_00399at 417.157 kb on + strand, within CCNA_00399at 417.175 kb on - strand, within CCNA_00399at 417.226 kb on + strand, within CCNA_00399at 417.278 kb on + strand, within CCNA_00399at 417.309 kb on + strand, within CCNA_00399at 417.317 kb on - strand, within CCNA_00399at 417.333 kb on - strand, within CCNA_00399at 417.343 kb on - strand, within CCNA_00399at 417.377 kb on - strand, within CCNA_00399at 417.449 kb on + strand, within CCNA_00399at 417.525 kb on - strand, within CCNA_00399at 417.534 kb on + strand, within CCNA_00399at 417.534 kb on + strand, within CCNA_00399at 417.542 kb on - strand, within CCNA_00399at 417.561 kb on + strand, within CCNA_00399at 417.561 kb on + strand, within CCNA_00399at 417.569 kb on - strand, within CCNA_00399at 417.569 kb on - strand, within CCNA_00399at 417.586 kb on - strand, within CCNA_00399at 417.646 kb on - strand, within CCNA_00399at 417.672 kb on + strand, within CCNA_00399at 417.689 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.703 kb on - strand, within CCNA_00399at 417.756 kb on + strand, within CCNA_00399at 417.767 kb on - strand, within CCNA_00399at 417.785 kb on - strand, within CCNA_00399at 417.785 kb on - strand, within CCNA_00399at 417.809 kb on - strand, within CCNA_00399at 417.854 kb on - strand, within CCNA_00399at 417.878 kb on + strand, within CCNA_00399at 417.883 kb on + strand, within CCNA_00399at 417.890 kb on + strand, within CCNA_00399at 417.910 kb on + strandat 417.915 kb on + strandat 417.915 kb on + strandat 417.915 kb on + strandat 417.915 kb on + strandat 417.957 kb on - strandat 417.957 kb on - strandat 417.957 kb on - strandat 417.966 kb on + strandat 417.969 kb on + strandat 417.974 kb on - strandat 418.062 kb on + strandat 418.077 kb on + strandat 418.077 kb on + strandat 418.101 kb on + strandat 418.101 kb on + strandat 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.131 kb on - strand, within CCNA_00400at 418.131 kb on - strand, within CCNA_00400at 418.148 kb on + strand, within CCNA_00400at 418.211 kb on + strand, within CCNA_00400at 418.242 kb on + strand, within CCNA_00400at 418.244 kb on - strand, within CCNA_00400at 418.244 kb on - strand, within CCNA_00400at 418.251 kb on + strand, within CCNA_00400at 418.251 kb on + strand, within CCNA_00400at 418.293 kb on + strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.357 kb on + strand, within CCNA_00400at 418.365 kb on - strand, within CCNA_00400at 418.378 kb on + strand, within CCNA_00400at 418.378 kb on + strandat 418.380 kb on - strand, within CCNA_00400at 418.448 kb on + strand, within CCNA_00400at 418.483 kb on + strandat 418.491 kb on - strandat 418.491 kb on - strandat 418.511 kb on - strandat 418.519 kb on + strandat 418.524 kb on + strandat 418.527 kb on - strandat 418.532 kb on + strandat 418.544 kb on + strandat 418.544 kb on + strandat 418.544 kb on + strandat 418.552 kb on - strandat 418.552 kb on - strandat 418.581 kb on + strand, within CCNA_00401at 418.613 kb on + strand, within CCNA_00401at 418.613 kb on + strand, within CCNA_00401at 418.613 kb on - strand, within CCNA_00401at 418.621 kb on - strand, within CCNA_00401at 418.632 kb on + strand, within CCNA_00401at 418.646 kb on + strand, within CCNA_00401at 418.656 kb on + strand, within CCNA_00401at 418.704 kb on - strand, within CCNA_00401at 418.778 kb on - strand, within CCNA_00401at 418.791 kb on + strand, within CCNA_00401at 418.806 kb on + strand, within CCNA_00401at 418.814 kb on - strand, within CCNA_00401at 418.820 kb on + strand, within CCNA_00401at 418.828 kb on - strand, within CCNA_00401at 418.830 kb on - strand, within CCNA_00401at 418.837 kb on + strand, within CCNA_00401at 418.865 kb on + strand, within CCNA_00401at 418.873 kb on - strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.906 kb on - strand, within CCNA_00401at 418.909 kb on + strand, within CCNA_00401at 418.921 kb on + strand, within CCNA_00401at 418.927 kb on + strand, within CCNA_00401at 418.944 kb on - strand, within CCNA_00401at 418.955 kb on - strand, within CCNA_00401at 418.956 kb on + strand, within CCNA_00401at 418.957 kb on + strand, within CCNA_00401at 418.990 kb on + strand, within CCNA_00401at 419.003 kb on - strand, within CCNA_00401at 419.011 kb on - strand, within CCNA_00401at 419.013 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
remove
415,925 - CCNA_00398 0.38 +1.2
415,997 + CCNA_00398 0.43 -2.6
415,998 + CCNA_00398 0.44 -2.2
415,998 + CCNA_00398 0.44 -1.3
416,005 - CCNA_00398 0.44 +1.8
416,005 - CCNA_00398 0.44 +1.0
416,006 - CCNA_00398 0.44 +1.2
416,006 - CCNA_00398 0.44 +0.7
416,006 - CCNA_00398 0.44 +1.2
416,025 + CCNA_00398 0.46 -2.2
416,051 + CCNA_00398 0.47 -1.3
416,051 + CCNA_00398 0.47 +0.3
416,059 - CCNA_00398 0.48 +1.4
416,059 - CCNA_00398 0.48 +0.8
416,106 + CCNA_00398 0.52 -0.7
416,139 + CCNA_00398 0.54 -0.2
416,145 - CCNA_00398 0.54 +0.7
416,146 - CCNA_00398 0.54 -0.2
416,153 - CCNA_00398 0.55 -0.3
416,159 + CCNA_00398 0.55 -1.2
416,163 - CCNA_00398 0.56 +0.8
416,195 + CCNA_00398 0.58 -2.0
416,198 + CCNA_00398 0.58 -1.9
416,203 - CCNA_00398 0.59 +0.5
416,230 + CCNA_00398 0.61 -1.6
416,237 + CCNA_00398 0.61 -1.0
416,237 + CCNA_00398 0.61 -1.2
416,237 + CCNA_00398 0.61 +0.3
416,245 - CCNA_00398 0.62 +1.1
416,245 - CCNA_00398 0.62 +0.5
416,247 + CCNA_00398 0.62 -0.4
416,255 - CCNA_00398 0.62 +0.1
416,299 - CCNA_00398 0.66 +0.3
416,360 + CCNA_00398 0.70 +0.6
416,395 + CCNA_00398 0.73 +0.8
416,397 + CCNA_00398 0.73 -1.2
416,405 - CCNA_00398 0.74 +1.7
416,405 - CCNA_00398 0.74 +2.0
416,405 - CCNA_00398 0.74 +1.8
416,410 - CCNA_00398 0.74 +1.2
416,443 + CCNA_00398 0.76 -1.6
416,451 - CCNA_00398 0.77 +0.9
416,453 + CCNA_00398 0.77 -1.2
416,453 + CCNA_00398 0.77 -1.7
416,454 + CCNA_00398 0.77 +0.0
416,454 + CCNA_00398 0.77 +0.3
416,459 + CCNA_00398 0.77 +1.8
416,461 - CCNA_00398 0.78 +1.7
416,461 - CCNA_00398 0.78 +1.6
416,461 - CCNA_00398 0.78 +1.5
416,461 - CCNA_00398 0.78 +1.1
416,461 - CCNA_00398 0.78 +0.7
416,461 - CCNA_00398 0.78 +1.1
416,461 - CCNA_00398 0.78 +0.8
416,472 + CCNA_00398 0.78 -1.6
416,474 + CCNA_00398 0.79 -0.2
416,480 - CCNA_00398 0.79 +0.3
416,506 - CCNA_00398 0.81 +0.9
416,506 - CCNA_00398 0.81 +1.0
416,556 - CCNA_00398 0.85 +1.2
416,562 - CCNA_00398 0.85 +0.5
416,600 - CCNA_00398 0.88 +0.3
416,638 - +0.7
416,649 - +2.0
416,658 + -0.9
416,666 + +0.3
416,666 + +0.3
416,675 + +0.8
416,705 + -1.0
416,714 - +0.7
416,728 + +0.1
416,757 + -0.7
416,765 + -1.7
416,765 - +0.7
416,800 + +1.9
416,824 + -2.0
416,824 + -1.1
416,832 - +0.6
416,850 + -0.0
416,893 + +0.3
416,901 - +0.9
416,901 - -2.2
416,901 - -1.1
416,911 + -0.4
416,974 - -0.7
416,984 + -2.5
417,017 - -2.0
417,037 - CCNA_00399 0.11 +0.3
417,046 - CCNA_00399 0.12 -1.0
417,066 + CCNA_00399 0.13 -1.8
417,090 + CCNA_00399 0.16 +0.5
417,119 + CCNA_00399 0.18 -1.3
417,119 + CCNA_00399 0.18 -2.2
417,119 + CCNA_00399 0.18 -1.0
417,120 + CCNA_00399 0.18 +0.4
417,127 - CCNA_00399 0.19 +0.3
417,127 - CCNA_00399 0.19 +0.3
417,152 - CCNA_00399 0.21 +0.3
417,157 + CCNA_00399 0.22 +0.0
417,175 - CCNA_00399 0.23 -1.0
417,226 + CCNA_00399 0.28 -0.9
417,278 + CCNA_00399 0.33 -0.6
417,309 + CCNA_00399 0.36 -0.6
417,317 - CCNA_00399 0.36 +1.9
417,333 - CCNA_00399 0.38 -2.0
417,343 - CCNA_00399 0.39 -0.7
417,377 - CCNA_00399 0.42 +1.9
417,449 + CCNA_00399 0.48 -0.4
417,525 - CCNA_00399 0.55 -2.0
417,534 + CCNA_00399 0.56 -1.6
417,534 + CCNA_00399 0.56 -0.0
417,542 - CCNA_00399 0.57 -1.8
417,561 + CCNA_00399 0.58 +1.9
417,561 + CCNA_00399 0.58 -1.1
417,569 - CCNA_00399 0.59 -0.7
417,569 - CCNA_00399 0.59 -0.5
417,586 - CCNA_00399 0.61 -0.1
417,646 - CCNA_00399 0.66 -1.0
417,672 + CCNA_00399 0.69 -2.1
417,689 + CCNA_00399 0.70 -0.2
417,695 + CCNA_00399 0.71 +2.9
417,703 - CCNA_00399 0.71 +1.9
417,756 + CCNA_00399 0.76 -1.8
417,767 - CCNA_00399 0.77 -1.9
417,785 - CCNA_00399 0.79 +0.3
417,785 - CCNA_00399 0.79 -1.6
417,809 - CCNA_00399 0.81 -2.2
417,854 - CCNA_00399 0.85 +0.9
417,878 + CCNA_00399 0.87 +0.5
417,883 + CCNA_00399 0.88 -1.6
417,890 + CCNA_00399 0.88 -1.6
417,910 + -0.5
417,915 + -1.5
417,915 + -0.7
417,915 + +0.2
417,915 + +0.9
417,957 - +0.3
417,957 - -1.1
417,957 - -2.4
417,966 + +1.9
417,969 + +0.3
417,974 - +0.9
418,062 + +0.3
418,077 + +1.6
418,077 + +1.6
418,101 + +2.5
418,101 + +2.1
418,123 + CCNA_00400 0.14 +2.6
418,123 + CCNA_00400 0.14 +2.0
418,123 + CCNA_00400 0.14 +1.9
418,123 + CCNA_00400 0.14 +2.3
418,123 + CCNA_00400 0.14 +1.9
418,123 + CCNA_00400 0.14 +1.5
418,123 + CCNA_00400 0.14 +2.1
418,131 - CCNA_00400 0.16 -0.1
418,131 - CCNA_00400 0.16 +0.3
418,148 + CCNA_00400 0.20 +2.3
418,211 + CCNA_00400 0.34 +1.6
418,242 + CCNA_00400 0.41 -1.1
418,244 - CCNA_00400 0.41 -1.8
418,244 - CCNA_00400 0.41 -1.6
418,251 + CCNA_00400 0.43 +2.7
418,251 + CCNA_00400 0.43 +2.3
418,293 + CCNA_00400 0.52 +2.3
418,295 - CCNA_00400 0.53 -1.8
418,295 - CCNA_00400 0.53 -1.1
418,357 + CCNA_00400 0.67 +2.0
418,365 - CCNA_00400 0.68 -1.1
418,378 + CCNA_00400 0.71 +2.1
418,378 + +3.9
418,380 - CCNA_00400 0.72 -0.5
418,448 + CCNA_00400 0.87 +2.0
418,483 + +1.5
418,491 - -1.8
418,491 - +0.3
418,511 - -1.3
418,519 + -0.7
418,524 + -1.1
418,527 - -1.6
418,532 + +0.9
418,544 + +1.9
418,544 + -1.3
418,544 + -0.4
418,552 - -0.5
418,552 - +0.9
418,581 + CCNA_00401 0.10 -2.1
418,613 + CCNA_00401 0.15 -0.3
418,613 + CCNA_00401 0.15 -2.1
418,613 - CCNA_00401 0.15 +0.3
418,621 - CCNA_00401 0.16 +0.0
418,632 + CCNA_00401 0.17 -0.3
418,646 + CCNA_00401 0.19 -0.8
418,656 + CCNA_00401 0.20 -0.3
418,704 - CCNA_00401 0.26 -1.1
418,778 - CCNA_00401 0.36 -0.1
418,791 + CCNA_00401 0.38 -0.3
418,806 + CCNA_00401 0.40 +0.7
418,814 - CCNA_00401 0.41 +1.0
418,820 + CCNA_00401 0.41 -0.3
418,828 - CCNA_00401 0.42 -0.8
418,830 - CCNA_00401 0.43 -1.3
418,837 + CCNA_00401 0.44 +1.1
418,865 + CCNA_00401 0.47 +0.0
418,873 - CCNA_00401 0.48 -2.3
418,898 + CCNA_00401 0.51 -1.0
418,898 + CCNA_00401 0.51 +1.2
418,906 - CCNA_00401 0.53 -1.0
418,909 + CCNA_00401 0.53 -1.2
418,921 + CCNA_00401 0.54 +1.9
418,927 + CCNA_00401 0.55 +0.3
418,944 - CCNA_00401 0.57 +1.3
418,955 - CCNA_00401 0.59 +0.3
418,956 + CCNA_00401 0.59 -2.4
418,957 + CCNA_00401 0.59 -1.1
418,990 + CCNA_00401 0.63 +0.6
419,003 - CCNA_00401 0.65 -0.8
419,011 - CCNA_00401 0.66 -1.8
419,013 + CCNA_00401 0.66 -0.8
419,015 + CCNA_00401 0.67 -1.6
419,015 + CCNA_00401 0.67 -0.5

Or see this region's nucleotide sequence