Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00311

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00309 and CCNA_00310 are separated by 20 nucleotidesCCNA_00310 and CCNA_00311 overlap by 4 nucleotidesCCNA_00311 and CCNA_00312 are separated by 55 nucleotidesCCNA_00312 and CCNA_00313 are separated by 84 nucleotides CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045 _00309 CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845 _00310 CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 CCNA_00312: CCNA_00312 - putative membrane spanning protein, at 326,229 to 326,630 _00312 CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 324.072 kb on - strandat 324.144 kb on - strand, within CCNA_00310at 324.151 kb on - strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.166 kb on + strand, within CCNA_00310at 324.174 kb on - strand, within CCNA_00310at 324.244 kb on - strand, within CCNA_00310at 324.310 kb on - strand, within CCNA_00310at 324.325 kb on - strand, within CCNA_00310at 324.470 kb on - strand, within CCNA_00310at 324.481 kb on + strand, within CCNA_00310at 324.498 kb on + strand, within CCNA_00310at 324.543 kb on + strand, within CCNA_00310at 324.551 kb on - strand, within CCNA_00310at 324.559 kb on - strand, within CCNA_00310at 324.564 kb on - strand, within CCNA_00310at 324.614 kb on + strand, within CCNA_00310at 324.674 kb on - strand, within CCNA_00310at 324.680 kb on - strand, within CCNA_00310at 324.692 kb on + strand, within CCNA_00310at 324.700 kb on - strand, within CCNA_00310at 324.709 kb on - strand, within CCNA_00310at 324.756 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.760 kb on - strand, within CCNA_00310at 324.799 kb on - strandat 324.800 kb on - strandat 324.806 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.830 kb on + strandat 324.833 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.838 kb on - strandat 324.929 kb on - strandat 324.987 kb on - strand, within CCNA_00311at 325.064 kb on - strand, within CCNA_00311at 325.094 kb on - strand, within CCNA_00311at 325.108 kb on + strand, within CCNA_00311at 325.109 kb on + strand, within CCNA_00311at 325.109 kb on + strand, within CCNA_00311at 325.150 kb on - strand, within CCNA_00311at 325.197 kb on - strand, within CCNA_00311at 325.202 kb on - strand, within CCNA_00311at 325.292 kb on - strand, within CCNA_00311at 325.294 kb on + strand, within CCNA_00311at 325.305 kb on - strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.314 kb on - strand, within CCNA_00311at 325.320 kb on - strand, within CCNA_00311at 325.331 kb on + strand, within CCNA_00311at 325.419 kb on - strand, within CCNA_00311at 325.522 kb on - strand, within CCNA_00311at 325.523 kb on + strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.538 kb on + strand, within CCNA_00311at 325.607 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.615 kb on - strand, within CCNA_00311at 325.654 kb on - strand, within CCNA_00311at 325.671 kb on - strand, within CCNA_00311at 325.695 kb on + strand, within CCNA_00311at 325.758 kb on + strand, within CCNA_00311at 325.765 kb on - strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.807 kb on - strand, within CCNA_00311at 325.829 kb on - strand, within CCNA_00311at 325.838 kb on - strand, within CCNA_00311at 325.848 kb on - strand, within CCNA_00311at 325.935 kb on + strand, within CCNA_00311at 325.945 kb on + strand, within CCNA_00311at 325.970 kb on - strand, within CCNA_00311at 325.984 kb on + strand, within CCNA_00311at 326.025 kb on + strand, within CCNA_00311at 326.031 kb on - strand, within CCNA_00311at 326.040 kb on + strandat 326.040 kb on + strandat 326.040 kb on + strandat 326.050 kb on + strandat 326.050 kb on + strandat 326.058 kb on - strandat 326.127 kb on + strandat 326.185 kb on - strandat 326.193 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.262 kb on + strandat 326.269 kb on + strandat 326.270 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.277 kb on - strand, within CCNA_00312at 326.328 kb on + strand, within CCNA_00312at 326.336 kb on + strand, within CCNA_00312at 326.344 kb on - strand, within CCNA_00312at 326.364 kb on + strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.378 kb on - strand, within CCNA_00312at 326.415 kb on + strand, within CCNA_00312at 326.423 kb on - strand, within CCNA_00312at 326.505 kb on - strand, within CCNA_00312at 326.516 kb on + strand, within CCNA_00312at 326.519 kb on - strand, within CCNA_00312at 326.521 kb on + strand, within CCNA_00312at 326.587 kb on - strand, within CCNA_00312at 326.598 kb on - strandat 326.598 kb on - strandat 326.600 kb on + strandat 326.653 kb on - strandat 326.653 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.759 kb on - strandat 326.761 kb on + strandat 326.779 kb on - strandat 326.790 kb on + strandat 326.790 kb on + strandat 326.818 kb on + strandat 326.828 kb on - strandat 326.905 kb on + strand, within CCNA_00313at 326.931 kb on + strand, within CCNA_00313at 326.974 kb on - strand, within CCNA_00313at 326.976 kb on + strand, within CCNA_00313at 327.066 kb on + strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.093 kb on + strand, within CCNA_00313at 327.101 kb on - strand, within CCNA_00313at 327.105 kb on + strand, within CCNA_00313at 327.127 kb on + strand, within CCNA_00313at 327.133 kb on + strand, within CCNA_00313

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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324,072 - +0.9
324,144 - CCNA_00310 0.10 +0.5
324,151 - CCNA_00310 0.11 -1.0
324,166 + CCNA_00310 0.13 -1.5
324,166 + CCNA_00310 0.13 -0.6
324,174 - CCNA_00310 0.14 +2.9
324,244 - CCNA_00310 0.23 +0.4
324,310 - CCNA_00310 0.31 +0.1
324,325 - CCNA_00310 0.33 +0.4
324,470 - CCNA_00310 0.52 -0.2
324,481 + CCNA_00310 0.53 +0.3
324,498 + CCNA_00310 0.55 +3.5
324,543 + CCNA_00310 0.61 +0.3
324,551 - CCNA_00310 0.62 +0.4
324,559 - CCNA_00310 0.63 +1.0
324,564 - CCNA_00310 0.64 +0.6
324,614 + CCNA_00310 0.70 +0.3
324,674 - CCNA_00310 0.78 +2.1
324,680 - CCNA_00310 0.79 -0.9
324,692 + CCNA_00310 0.80 -0.1
324,700 - CCNA_00310 0.81 -0.0
324,709 - CCNA_00310 0.82 +1.1
324,756 - CCNA_00310 0.88 +1.2
324,760 - CCNA_00310 0.89 +0.8
324,760 - CCNA_00310 0.89 +2.0
324,760 - CCNA_00310 0.89 -0.4
324,760 - CCNA_00310 0.89 +0.0
324,760 - CCNA_00310 0.89 -1.2
324,799 - +1.5
324,800 - +1.1
324,806 + +0.6
324,830 + -1.6
324,830 + -0.5
324,830 + -1.1
324,833 - +0.1
324,838 - +0.7
324,838 - +1.2
324,838 - +0.9
324,929 - +1.2
324,987 - CCNA_00311 0.11 +1.0
325,064 - CCNA_00311 0.17 +2.2
325,094 - CCNA_00311 0.19 +1.9
325,108 + CCNA_00311 0.20 +0.1
325,109 + CCNA_00311 0.20 +1.9
325,109 + CCNA_00311 0.20 +1.1
325,150 - CCNA_00311 0.23 +0.7
325,197 - CCNA_00311 0.27 +2.6
325,202 - CCNA_00311 0.27 +1.9
325,292 - CCNA_00311 0.34 +1.0
325,294 + CCNA_00311 0.34 +1.5
325,305 - CCNA_00311 0.35 +1.1
325,312 + CCNA_00311 0.35 -1.5
325,312 + CCNA_00311 0.35 +1.1
325,314 - CCNA_00311 0.35 +1.4
325,320 - CCNA_00311 0.36 +1.7
325,331 + CCNA_00311 0.37 -0.5
325,419 - CCNA_00311 0.43 +1.3
325,522 - CCNA_00311 0.51 +0.3
325,523 + CCNA_00311 0.51 -0.6
325,531 - CCNA_00311 0.52 +0.9
325,531 - CCNA_00311 0.52 +2.3
325,538 + CCNA_00311 0.52 +0.9
325,607 + CCNA_00311 0.57 +3.0
325,613 + CCNA_00311 0.58 -1.7
325,613 + CCNA_00311 0.58 -0.7
325,615 - CCNA_00311 0.58 +1.2
325,654 - CCNA_00311 0.61 +1.2
325,671 - CCNA_00311 0.62 -0.0
325,695 + CCNA_00311 0.64 +0.3
325,758 + CCNA_00311 0.69 +0.9
325,765 - CCNA_00311 0.69 +2.5
325,766 - CCNA_00311 0.69 +2.2
325,780 - CCNA_00311 0.70 +1.2
325,780 - CCNA_00311 0.70 +1.2
325,807 - CCNA_00311 0.72 +1.9
325,829 - CCNA_00311 0.74 +1.9
325,838 - CCNA_00311 0.75 +2.7
325,848 - CCNA_00311 0.76 +1.7
325,935 + CCNA_00311 0.82 +0.4
325,945 + CCNA_00311 0.83 -0.3
325,970 - CCNA_00311 0.85 +0.5
325,984 + CCNA_00311 0.86 -0.1
326,025 + CCNA_00311 0.89 -0.5
326,031 - CCNA_00311 0.89 +0.9
326,040 + +0.3
326,040 + -0.1
326,040 + -1.7
326,050 + +0.3
326,050 + +0.3
326,058 - +1.2
326,127 + +0.9
326,185 - +1.4
326,193 - +0.1
326,201 - +1.1
326,201 - +1.6
326,201 - +1.6
326,262 + -0.5
326,269 + -0.3
326,270 - CCNA_00312 0.10 +2.1
326,276 - CCNA_00312 0.12 +1.5
326,276 - CCNA_00312 0.12 +1.3
326,277 - CCNA_00312 0.12 +1.3
326,328 + CCNA_00312 0.25 -0.0
326,336 + CCNA_00312 0.27 +0.2
326,344 - CCNA_00312 0.29 +1.8
326,364 + CCNA_00312 0.34 +0.5
326,377 - CCNA_00312 0.37 +2.1
326,377 - CCNA_00312 0.37 +1.5
326,377 - CCNA_00312 0.37 +1.4
326,378 - CCNA_00312 0.37 +1.3
326,415 + CCNA_00312 0.46 +0.5
326,423 - CCNA_00312 0.48 +1.6
326,505 - CCNA_00312 0.69 +1.7
326,516 + CCNA_00312 0.71 -0.9
326,519 - CCNA_00312 0.72 +0.9
326,521 + CCNA_00312 0.73 +1.9
326,587 - CCNA_00312 0.89 +0.4
326,598 - +0.3
326,598 - +0.9
326,600 + -2.1
326,653 - +0.1
326,653 - +1.2
326,748 - +1.0
326,748 - +0.2
326,748 - +0.9
326,759 - +1.2
326,761 + -1.7
326,779 - -0.0
326,790 + -1.3
326,790 + -1.5
326,818 + -0.3
326,828 - -0.0
326,905 + CCNA_00313 0.10 -0.7
326,931 + CCNA_00313 0.12 -0.8
326,974 - CCNA_00313 0.14 -0.1
326,976 + CCNA_00313 0.14 +1.9
327,066 + CCNA_00313 0.19 +0.3
327,081 - CCNA_00313 0.20 +1.0
327,081 - CCNA_00313 0.20 +1.0
327,093 + CCNA_00313 0.21 -2.0
327,101 - CCNA_00313 0.21 +0.5
327,105 + CCNA_00313 0.21 +0.9
327,127 + CCNA_00313 0.23 -0.9
327,133 + CCNA_00313 0.23 -0.7

Or see this region's nucleotide sequence